Magnesium in PDB 6xji: Pmtcd Abc Exporter at C1 Symmetry

The binding sites of Magnesium atom in the Pmtcd Abc Exporter at C1 Symmetry (pdb code 6xji). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pmtcd Abc Exporter at C1 Symmetry, PDB code: 6xji:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Pmtcd Abc Exporter at C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pmtcd Abc Exporter at C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:87.4 occ:1.00 O2G C:AGS301 2.2 0.2 1.0 OG1 C:THR40 2.3 0.5 1.0 OE2 C:GLU70 2.5 0.3 1.0 O2B C:AGS301 2.6 0.8 1.0 PG C:AGS301 3.0 0.5 1.0 S1G C:AGS301 3.1 0.5 1.0 CD C:GLU70 3.5 0.3 1.0 CB C:THR40 3.6 0.5 1.0 O3B C:AGS301 3.6 0.8 1.0 OD2 C:ASP144 3.7 0.6 1.0 PB C:AGS301 3.7 0.6 1.0 OD1 C:ASP144 3.9 0.6 1.0 O2A C:AGS301 3.9 0.7 1.0 OE1 C:GLU70 3.9 0.3 1.0 CG C:ASP144 4.2 0.6 1.0 O3G C:AGS301 4.3 0.9 1.0 O3A C:AGS301 4.3 0.9 1.0 CG2 C:THR40 4.5 0.5 1.0 OE2 C:GLU145 4.5 0.1 1.0 N C:THR40 4.6 88.0 1.0 CA C:THR40 4.6 88.0 1.0 PA C:AGS301 4.7 0.7 1.0 N D:MET122 4.7 90.6 1.0 CB D:MET122 4.7 0.2 1.0 CG C:GLU70 4.8 0.3 1.0 CB D:SER121 4.9 0.2 1.0

Magnesium binding site 2 out of 2 in the Pmtcd Abc Exporter at C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pmtcd Abc Exporter at C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg302 b:87.4 occ:1.00 O2G D:AGS301 2.2 0.2 1.0 OG1 D:THR40 2.3 0.5 1.0 OE2 D:GLU70 2.5 0.3 1.0 O2B D:AGS301 2.6 0.8 1.0 PG D:AGS301 3.0 0.5 1.0 S1G D:AGS301 3.1 0.5 1.0 CD D:GLU70 3.5 0.3 1.0 CB D:THR40 3.6 0.5 1.0 O3B D:AGS301 3.6 0.8 1.0 OD2 D:ASP144 3.7 0.6 1.0 PB D:AGS301 3.7 0.6 1.0 OD1 D:ASP144 3.9 0.6 1.0 O2A D:AGS301 3.9 0.7 1.0 OE1 D:GLU70 3.9 0.3 1.0 CG D:ASP144 4.2 0.6 1.0 O3G D:AGS301 4.3 0.9 1.0 O3A D:AGS301 4.3 0.9 1.0 CG2 D:THR40 4.5 0.5 1.0 OE2 D:GLU145 4.5 0.1 1.0 N D:THR40 4.6 88.0 1.0 CA D:THR40 4.6 88.0 1.0 PA D:AGS301 4.7 0.7 1.0 N C:MET122 4.7 90.6 1.0 CB C:MET122 4.7 0.2 1.0 CG D:GLU70 4.8 0.3 1.0 CB C:SER121 4.9 0.2 1.0

N.Zeytuni, S.W.Dickey, J.Hu, H.T.Chou, L.J.Worrall, J.A.N.Alexander, M.L.Carlson, M.Nosella, F.Duong, Z.Yu, M.Otto, N.C.J.Strynadka. Structural Insight Into the Staphylococcus Aureus Atp-Driven Exporter of Virulent Peptide Toxins Sci Adv V. 6 B8219 2020.
ISSN: ESSN 2375-2548
PubMed: 32998902
DOI: 10.1126/SCIADV.ABB8219