Magnesium in PDB 6xjo: Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus

The structure of Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus, PDB code: 6xjo was solved by J.P.O'donnell, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.02 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.48, 88.04, 168.82, 90, 90, 90
R / Rfree (%)	17.9 / 23.1

The binding sites of Magnesium atom in the Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus (pdb code 6xjo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus, PDB code: 6xjo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:64.6 occ:1.00 OD2 A:ASP142 2.6 51.3 1.0 O1B A:GDP401 2.7 30.3 1.0 NH2 A:ARG109 2.9 110.0 1.0 OE1 A:GLN144 3.1 82.0 1.0 O A:HOH501 3.3 76.9 1.0 OD1 A:ASP142 3.4 49.7 1.0 CG A:ASP142 3.4 47.8 1.0 NH1 A:ARG109 3.4 105.6 1.0 CZ A:ARG109 3.4 107.2 1.0 CD A:GLN144 3.4 80.7 1.0 NE2 A:GLN144 3.5 84.5 1.0 CE A:LYS73 3.5 37.3 1.0 PB A:GDP401 3.6 42.3 1.0 O3B A:GDP401 3.8 40.3 1.0 NZ A:LYS73 3.8 39.2 1.0 CB A:LYS73 3.9 28.6 1.0 N A:SER74 4.0 31.2 1.0 O2B A:GDP401 4.0 34.1 1.0 CB A:SER74 4.1 45.3 1.0 NE A:ARG109 4.5 105.1 1.0 CA A:SER74 4.5 39.6 1.0 CG A:GLN144 4.5 72.6 1.0 OG A:SER74 4.7 46.5 1.0 CD A:LYS73 4.7 33.1 1.0 CB A:GLN144 4.7 60.4 1.0 C A:LYS73 4.7 32.8 1.0 CB A:ASP142 4.8 45.0 1.0 CG A:LYS73 4.8 30.8 1.0 CA A:LYS73 4.9 31.0 1.0

Magnesium binding site 2 out of 2 in the Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Atlastin-3 (Residues 1-334) Bound to Gdp-MG2+ Exhibits An Ordered Amino Terminus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:50.2 occ:1.00 OD2 B:ASP142 2.6 38.9 1.0 O2B B:GDP401 2.7 32.1 1.0 NH1 B:ARG109 2.7 103.6 1.0 O B:HOH554 2.9 49.9 1.0 OE1 B:GLN144 3.2 62.7 1.0 NH2 B:ARG109 3.3 106.3 1.0 CZ B:ARG109 3.4 104.1 1.0 CD B:GLN144 3.5 62.9 1.0 CG B:ASP142 3.5 34.6 1.0 OD1 B:ASP142 3.6 38.3 1.0 CE B:LYS73 3.7 36.1 1.0 NE2 B:GLN144 3.7 63.4 1.0 PB B:GDP401 3.7 38.2 1.0 NZ B:LYS73 3.8 37.4 1.0 CB B:LYS73 4.0 34.6 1.0 O3B B:GDP401 4.0 38.9 1.0 O1B B:GDP401 4.0 33.2 1.0 N B:SER74 4.1 35.9 1.0 CB B:SER74 4.2 44.3 1.0 CG B:GLN144 4.4 60.1 1.0 CA B:SER74 4.6 41.0 1.0 OE1 B:GLN120 4.7 59.2 1.0 NE B:ARG109 4.7 102.2 1.0 C B:LYS73 4.7 35.0 1.0 CB B:GLN144 4.8 50.4 1.0 CD B:LYS73 4.8 37.2 1.0 OG B:SER74 4.8 51.4 1.0 CG B:LYS73 4.8 39.1 1.0 CA B:LYS73 4.8 33.1 1.0 CB B:ASP142 4.9 33.0 1.0

J.P.O'donnell, C.M.Kelly, H.Sondermann. Intrinsic and Extrinsic Regulation of Atlastin By A Short Amino-Terminal Hypervariable Region To Be Published.