Magnesium in PDB 6xll: Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

Enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

All present enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT):
2.7.7.6;

Other elements in 6xll:

The structure of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) (pdb code 6xll). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT), PDB code: 6xll:

Magnesium binding site 1 out of 1 in 6xll

Go back to

Magnesium Binding Sites List in 6xll

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:65.5 occ:1.00	O3'	R:U5	1.8	81.0	1.0
	OD1	D:ASP460	2.0	61.3	1.0
	OD1	D:ASP462	2.0	61.4	1.0
	OD1	D:ASP464	2.1	63.0	1.0
	CG	D:ASP464	2.8	63.0	1.0
	OD2	D:ASP464	2.8	63.0	1.0
	CG	D:ASP460	3.0	61.3	1.0
	CG	D:ASP462	3.0	61.4	1.0
	C3'	R:U5	3.2	81.0	1.0
	OD2	D:ASP462	3.3	61.4	1.0
	OD2	D:ASP460	3.4	61.3	1.0
	O	D:ASP460	3.7	61.3	1.0
	O2'	R:U5	3.9	81.0	1.0
	C4'	R:U5	3.9	81.0	1.0
	C2'	R:U5	4.1	81.0	1.0
	CB	D:ASP464	4.2	63.0	1.0
	CB	D:ASP460	4.3	61.3	1.0
	N	D:ASP460	4.3	61.3	1.0
	C	D:ASP460	4.3	61.3	1.0
	C5'	R:U5	4.4	81.0	1.0
	CB	D:ASP462	4.4	61.4	1.0
	N	D:ASP462	4.4	61.4	1.0
	CA	D:ASP460	4.6	61.3	1.0
	N	D:ASP464	4.6	63.0	1.0
	C	D:ASP462	4.7	61.4	1.0
	CA	D:ASP462	4.7	61.4	1.0
	CA	D:ASP464	4.8	63.0	1.0
	O	D:ASP462	4.9	61.4	1.0
	O5'	R:U5	4.9	81.0	1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.

Page generated: Tue Oct 1 23:35:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy