Magnesium in PDB 6xll: Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

Enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

All present enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT):
2.7.7.6;

Other elements in 6xll:

The structure of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) (pdb code 6xll). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT), PDB code: 6xll:

Magnesium binding site 1 out of 1 in 6xll

Go back to

Magnesium Binding Sites List in 6xll

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rnap-Promoter Initial Transcribing Complex with 5-Nt Rna Transcript (Rpitc-5NT) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:65.5 occ:1.00	O3'	R:U5	1.8	81.0	1.0
	OD1	D:ASP460	2.0	61.3	1.0
	OD1	D:ASP462	2.0	61.4	1.0
	OD1	D:ASP464	2.1	63.0	1.0
	CG	D:ASP464	2.8	63.0	1.0
	OD2	D:ASP464	2.8	63.0	1.0
	CG	D:ASP460	3.0	61.3	1.0
	CG	D:ASP462	3.0	61.4	1.0
	C3'	R:U5	3.2	81.0	1.0
	OD2	D:ASP462	3.3	61.4	1.0
	OD2	D:ASP460	3.4	61.3	1.0
	O	D:ASP460	3.7	61.3	1.0
	O2'	R:U5	3.9	81.0	1.0
	C4'	R:U5	3.9	81.0	1.0
	C2'	R:U5	4.1	81.0	1.0
	CB	D:ASP464	4.2	63.0	1.0
	CB	D:ASP460	4.3	61.3	1.0
	N	D:ASP460	4.3	61.3	1.0
	C	D:ASP460	4.3	61.3	1.0
	C5'	R:U5	4.4	81.0	1.0
	CB	D:ASP462	4.4	61.4	1.0
	N	D:ASP462	4.4	61.4	1.0
	CA	D:ASP460	4.6	61.3	1.0
	N	D:ASP464	4.6	63.0	1.0
	C	D:ASP462	4.7	61.4	1.0
	CA	D:ASP462	4.7	61.4	1.0
	CA	D:ASP464	4.8	63.0	1.0
	O	D:ASP462	4.9	61.4	1.0
	O5'	R:U5	4.9	81.0	1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.

Page generated: Tue Oct 1 23:35:19 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy