Magnesium in PDB 6xlm: Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription

Enzymatic activity of Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription

All present enzymatic activity of Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription:
2.7.7.6;

Other elements in 6xlm:

The structure of Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription (pdb code 6xlm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription, PDB code: 6xlm:

Magnesium binding site 1 out of 1 in 6xlm

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Magnesium Binding Sites List in 6xlm

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E.Coli Rnap-Dna Elongation Complex 1 (RDE1) in Ecmrr-Dependent Transcription within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:87.7 occ:1.00	OD1	D:ASP464	2.0	77.1	1.0
	OD1	D:ASP460	2.0	76.5	1.0
	OD1	D:ASP462	2.1	76.1	1.0
	O	D:ASP460	2.3	76.5	1.0
	O3'	R:A9	2.6	85.1	1.0
	CG	D:ASP464	2.6	77.1	1.0
	OD2	D:ASP464	3.1	77.1	1.0
	CG	D:ASP460	3.1	76.5	1.0
	CG	D:ASP462	3.1	76.1	1.0
	C	D:ASP460	3.2	76.5	1.0
	O2'	R:A9	3.4	85.1	1.0
	N	D:ASP460	3.7	76.5	1.0
	CB	D:ASP464	3.7	77.1	1.0
	C3'	R:A9	3.7	85.1	1.0
	CA	D:ASP460	3.8	76.5	1.0
	OD2	D:ASP462	3.8	76.1	1.0
	N	D:ASP462	3.8	76.1	1.0
	CB	D:ASP460	3.9	76.5	1.0
	N	D:ASP464	4.0	77.1	1.0
	OD2	D:ASP460	4.1	76.5	1.0
	C4'	R:A9	4.1	85.1	1.0
	C2'	R:A9	4.2	85.1	1.0
	CB	D:ASP462	4.2	76.1	1.0
	CA	D:ASP464	4.3	77.1	1.0
	N	D:PHE461	4.3	71.8	1.0
	CA	D:ASP462	4.3	76.1	1.0
	C	D:ASP462	4.6	76.1	1.0
	N	D:GLY463	4.6	75.5	1.0
	C	D:PHE461	4.7	71.8	1.0
	CA	D:PHE461	4.8	71.8	1.0
	C	D:ALA459	4.9	73.9	1.0
	NH2	D:ARG425	4.9	70.8	1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.

Page generated: Tue Oct 1 23:35:35 2024

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