Magnesium in PDB 6xln: Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription

Enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription

All present enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription:
2.7.7.6;

Other elements in 6xln:

The structure of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription (pdb code 6xln). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription, PDB code: 6xln:

Magnesium binding site 1 out of 1 in 6xln

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Magnesium Binding Sites List in 6xln

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:71.8 occ:1.00	OD1	D:ASP460	1.8	66.6	1.0
	OD1	D:ASP464	1.9	64.5	1.0
	OD1	D:ASP462	2.0	65.2	1.0
	O	D:ASP460	2.4	66.6	1.0
	CG	D:ASP464	2.5	64.5	1.0
	O3'	R:A9	2.5	74.1	1.0
	OD2	D:ASP464	2.5	64.5	1.0
	CG	D:ASP460	2.9	66.6	1.0
	CG	D:ASP462	3.1	65.2	1.0
	C	D:ASP460	3.4	66.6	1.0
	OD2	D:ASP460	3.5	66.6	1.0
	OD2	D:ASP462	3.7	65.2	1.0
	O2'	R:A9	3.7	74.1	1.0
	C3'	R:A9	3.7	74.1	1.0
	CB	D:ASP464	3.8	64.5	1.0
	N	D:ASP460	3.9	66.6	1.0
	N	D:ASP462	4.0	65.2	1.0
	CA	D:ASP460	4.0	66.6	1.0
	CB	D:ASP460	4.0	66.6	1.0
	C4'	R:A9	4.1	74.1	1.0
	N	D:ASP464	4.1	64.5	1.0
	C2'	R:A9	4.3	74.1	1.0
	CB	D:ASP462	4.3	65.2	1.0
	CA	D:ASP464	4.4	64.5	1.0
	N	D:PHE461	4.4	61.9	1.0
	CA	D:ASP462	4.5	65.2	1.0
	C	D:ASP462	4.5	65.2	1.0
	N	D:GLY463	4.5	64.7	1.0
	C5'	R:A9	4.8	74.1	1.0
	C	D:GLY463	4.9	64.7	1.0
	C	D:PHE461	4.9	61.9	1.0
	CA	D:PHE461	5.0	61.9	1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.

Page generated: Tue Oct 1 23:35:44 2024

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