Magnesium in PDB 6xln: Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription

Enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription

All present enzymatic activity of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription:
2.7.7.6;

Other elements in 6xln:

The structure of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription (pdb code 6xln). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription, PDB code: 6xln:

Magnesium binding site 1 out of 1 in 6xln

Go back to Magnesium Binding Sites List in 6xln
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rnap-Dna Elongation Complex 2 (RDE2) in Ecmrr-Dependent Transcription within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1501

b:71.8
occ:1.00
OD1 D:ASP460 1.8 66.6 1.0
OD1 D:ASP464 1.9 64.5 1.0
OD1 D:ASP462 2.0 65.2 1.0
O D:ASP460 2.4 66.6 1.0
CG D:ASP464 2.5 64.5 1.0
O3' R:A9 2.5 74.1 1.0
OD2 D:ASP464 2.5 64.5 1.0
CG D:ASP460 2.9 66.6 1.0
CG D:ASP462 3.1 65.2 1.0
C D:ASP460 3.4 66.6 1.0
OD2 D:ASP460 3.5 66.6 1.0
OD2 D:ASP462 3.7 65.2 1.0
O2' R:A9 3.7 74.1 1.0
C3' R:A9 3.7 74.1 1.0
CB D:ASP464 3.8 64.5 1.0
N D:ASP460 3.9 66.6 1.0
N D:ASP462 4.0 65.2 1.0
CA D:ASP460 4.0 66.6 1.0
CB D:ASP460 4.0 66.6 1.0
C4' R:A9 4.1 74.1 1.0
N D:ASP464 4.1 64.5 1.0
C2' R:A9 4.3 74.1 1.0
CB D:ASP462 4.3 65.2 1.0
CA D:ASP464 4.4 64.5 1.0
N D:PHE461 4.4 61.9 1.0
CA D:ASP462 4.5 65.2 1.0
C D:ASP462 4.5 65.2 1.0
N D:GLY463 4.5 64.7 1.0
C5' R:A9 4.8 74.1 1.0
C D:GLY463 4.9 64.7 1.0
C D:PHE461 4.9 61.9 1.0
CA D:PHE461 5.0 61.9 1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.
Page generated: Sat Apr 17 16:40:47 2021

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