Magnesium in PDB 6xmt: Structure of P5A-Atpase SPF1, BEF3-Bound Form

The structure of Structure of P5A-Atpase SPF1, BEF3-Bound Form also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Structure of P5A-Atpase SPF1, BEF3-Bound Form (pdb code 6xmt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of P5A-Atpase SPF1, BEF3-Bound Form, PDB code: 6xmt:

Magnesium binding site 1 out of 1 in the Structure of P5A-Atpase SPF1, BEF3-Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of P5A-Atpase SPF1, BEF3-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1302 b:8.1 occ:1.00 F1 A:BEF1301 1.8 10.2 1.0 O A:THR489 2.3 9.7 1.0 OD2 A:ASP487 2.3 11.3 1.0 OD1 A:ASP816 2.3 6.5 1.0 BE A:BEF1301 3.3 10.2 1.0 CG A:ASP487 3.4 11.3 1.0 C A:THR489 3.5 9.7 1.0 CG A:ASP816 3.5 6.5 1.0 N A:GLY817 3.6 6.5 1.0 OD1 A:ASP487 3.8 11.3 1.0 CA A:GLY817 4.0 6.5 1.0 F2 A:BEF1301 4.0 10.2 1.0 OD2 A:ASP816 4.1 6.5 1.0 F3 A:BEF1301 4.3 10.2 1.0 N A:ASP816 4.4 6.5 1.0 N A:GLY490 4.4 8.4 1.0 CA A:GLY490 4.4 8.4 1.0 C A:ASP816 4.4 6.5 1.0 CA A:THR489 4.5 9.7 1.0 O A:ALA305 4.5 14.2 1.0 N A:THR489 4.6 9.7 1.0 CB A:THR489 4.7 9.7 1.0 CB A:ASP816 4.7 6.5 1.0 OD2 A:ASP820 4.7 8.2 1.0 CB A:ASP487 4.7 11.3 1.0 CA A:ASP816 4.7 6.5 1.0 OG1 A:THR491 4.8 7.0 1.0 N A:THR491 4.9 7.0 1.0 OD1 A:ASN819 4.9 9.5 1.0 C A:GLY490 4.9 8.4 1.0

M.J.Mckenna, S.I.Sim, A.Ordureau, L.Wei, J.W.Harper, S.Shao, E.Park. The Endoplasmic Reticulum P5A-Atpase Is A Transmembrane Helix Dislocase. Science V. 369 2020.
ISSN: ESSN 1095-9203
PubMed: 32973005
DOI: 10.1126/SCIENCE.ABC5809