Magnesium in PDB 6xw7: Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca)

The structure of Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca), PDB code: 6xw7 was solved by T.Kilic, C.Sabin, G.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.21 / 2.15
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	190.730, 124.930, 113.130, 90.00, 125.30, 90.00
R / Rfree (%)	17.1 / 21.5

The binding sites of Magnesium atom in the Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca) (pdb code 6xw7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca), PDB code: 6xw7:

Magnesium binding site 1 out of 1 in the Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Murine Norovirus P Domain in Complex with Nanobody Nb-5829 and Glycochenodeoxycholate (Gcdca) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:41.7 occ:1.00 OE1 B:GLN438 2.4 25.4 1.0 O B:HOH863 2.4 42.7 1.0 OD2 B:ASP440 2.4 37.3 1.0 OE2 B:GLU447 2.6 40.5 1.0 O B:HOH710 2.7 35.4 1.0 O B:HOH854 2.8 47.0 1.0 CD B:GLN438 3.4 27.9 1.0 CG B:ASP440 3.5 36.0 1.0 CD B:GLU447 3.8 34.7 1.0 NE2 B:GLN438 3.8 24.6 1.0 CB B:ASP440 3.9 35.2 1.0 O B:HOH775 4.1 33.4 1.0 O B:ALA445 4.3 25.4 1.0 OE1 B:GLU447 4.4 39.4 1.0 O B:ASP443 4.5 41.0 1.0 O B:HOH832 4.5 42.5 1.0 OD1 B:ASP440 4.6 35.0 1.0 O B:HOH856 4.7 28.9 1.0 OD2 B:ASP443 4.7 52.6 1.0 CG B:GLN438 4.7 29.2 1.0 CG B:GLU447 4.7 30.8 1.0 CB B:GLU447 4.8 26.4 1.0

A.D.Koromyslova, J.M.Devant, T.Kilic, C.D.Sabin, V.Malak, G.Hofhaus, G.S.Hansman. Nanobody Mediated Neutralization Reveals An Achilles Heel For Norovirus To Be Published.