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Magnesium in PDB 6xx7: Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp

Enzymatic activity of Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp

All present enzymatic activity of Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp:
2.7.11.1;

Protein crystallography data

The structure of Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp, PDB code: 6xx7 was solved by M.Demulder, L.De Veylder, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.41 / 2.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.560, 60.560, 228.600, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 24.6

Other elements in 6xx7:

The structure of Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp (pdb code 6xx7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp, PDB code: 6xx7:

Magnesium binding site 1 out of 1 in 6xx7

Go back to Magnesium Binding Sites List in 6xx7
Magnesium binding site 1 out of 1 in the Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Arabidopsis Thaliana Casein Kinase 2 (CK2) Alpha-1 Crystal in Complex with Anp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:86.6
occ:1.00
 OD1 A:ASN156 2.4 48.5 1.0
O3G A:ANP401 2.5 0.7 1.0
O1A A:ANP401 2.5 81.5 1.0
OD2 A:ASP170 3.0 77.4 1.0
N3B A:ANP401 3.0 0.7 1.0
PG A:ANP401 3.3 0.2 1.0
CG A:ASN156 3.5 48.4 1.0
CG A:ASP170 3.8 67.3 1.0
PA A:ANP401 3.9 82.9 1.0
CB A:ASP170 3.9 54.1 1.0
ND1 A:HIS155 3.9 94.5 1.0
ND2 A:ASN156 4.0 48.1 1.0
C5' A:ANP401 4.2 72.7 1.0
O A:HIS155 4.2 51.6 1.0
PB A:ANP401 4.2 0.1 1.0
O2G A:ANP401 4.3 0.9 1.0
CE A:LYS153 4.3 56.2 1.0
O1B A:ANP401 4.5 0.5 1.0
O1G A:ANP401 4.5 0.4 1.0
O5' A:ANP401 4.5 78.1 1.0
O3' A:ANP401 4.5 79.9 1.0
CD1 A:ILE169 4.5 46.9 1.0
O3A A:ANP401 4.6 0.5 1.0
C A:HIS155 4.7 51.9 1.0
NZ A:LYS153 4.7 64.0 1.0
CB A:ASN156 4.7 46.4 1.0
CB A:HIS155 4.8 73.8 1.0
CG A:HIS155 4.8 89.3 1.0
CE1 A:HIS155 4.8 98.9 1.0
OD1 A:ASP170 4.8 75.3 1.0
CA A:ASN156 4.9 48.5 1.0
C3' A:ANP401 4.9 73.9 1.0
O2A A:ANP401 4.9 78.8 1.0
N A:ASN156 5.0 43.3 1.0

Reference:

M.Demulder, L.De Veylder, R.Loris. Crystal Structure of Arabidopsis Thaliana Casein Kinase 2 Alpha 1. Acta Crystallogr.,Sect.F V. 76 182 2020.
ISSN: ESSN 2053-230X
PubMed: 32254052
DOI: 10.1107/S2053230X20004537
Page generated: Tue Oct 1 23:42:51 2024

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