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Magnesium in PDB 6y0y: Sarcin Ricin Loop, Mutant C2666U

Protein crystallography data

The structure of Sarcin Ricin Loop, Mutant C2666U, PDB code: 6y0y was solved by E.Ennifar, E.Westhof, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.28 / 0.95
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 22.48, 27.55, 29.69, 91.58, 93.61, 108.31
R / Rfree (%) 12.5 / 13.9

Other elements in 6y0y:

The structure of Sarcin Ricin Loop, Mutant C2666U also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Sarcin Ricin Loop, Mutant C2666U (pdb code 6y0y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sarcin Ricin Loop, Mutant C2666U, PDB code: 6y0y:

Magnesium binding site 1 out of 1 in 6y0y

Go back to Magnesium Binding Sites List in 6y0y
Magnesium binding site 1 out of 1 in the Sarcin Ricin Loop, Mutant C2666U


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sarcin Ricin Loop, Mutant C2666U within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2701

b:18.1
occ:1.00
O A:HOH2830 2.0 20.4 1.0
O A:HOH2836 2.2 15.7 1.0
O A:HOH2970 2.2 26.4 1.0
O A:HOH2956 2.2 36.1 1.0
O A:HOH2976 2.2 31.6 1.0
O A:HOH2872 2.2 12.5 1.0
O A:HOH2880 3.7 23.5 1.0
N7 A:G2659 3.9 8.8 1.0
O A:HOH2813 4.1 13.7 1.0
O6 A:G2659 4.1 9.4 1.0
OP1 A:G2661 4.2 9.6 1.0
O A:HOH2824 4.2 21.8 1.0
O A:HOH2871 4.3 14.1 1.0
OP2 A:G2661 4.5 9.5 1.0
C5 A:G2659 4.5 8.2 1.0
C6 A:G2659 4.6 8.6 1.0
H5'' A:A2660 4.7 11.5 0.0
P A:G2661 4.8 9.0 1.0
C8 A:G2659 4.8 8.4 1.0

Reference:

E.Ennifar, E.Westhof. Sarcin Ricin Loop, Mutant C2666U To Be Published.
Page generated: Wed Oct 2 00:06:01 2024

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