Magnesium in PDB 6y1d: Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide

The structure of Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, PDB code: 6y1d was solved by B.A.Somsen, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 1.38
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	82.261, 111.949, 62.873, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 18.7

The structure of Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide (pdb code 6y1d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, PDB code: 6y1d:

Magnesium binding site 1 out of 1 in the Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binary Complex of 14-3-3 Sigma (C38N) with the Estrogen Related Receptor Gamma (Dbd) Phosphopeptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:21.8 occ:1.00 O A:GLU161 2.3 18.6 1.0 O A:HOH611 2.3 37.9 1.0 O A:HOH512 2.6 26.6 1.0 C A:GLU161 3.5 15.1 1.0 HA A:MET162 3.6 15.7 0.3 HA A:MET162 3.6 15.7 0.7 HB3 A:GLU161 4.0 18.8 1.0 HA A:GLU161 4.1 16.5 1.0 HD3 A:PRO163 4.2 19.6 1.0 HG3 A:MET162 4.2 23.6 0.3 CA A:GLU161 4.3 13.8 1.0 N A:MET162 4.3 13.2 1.0 CA A:MET162 4.4 13.1 0.3 CA A:MET162 4.4 13.1 0.7 OE1 A:GLU115 4.5 36.6 1.0 CB A:GLU161 4.7 15.7 1.0 OE1 A:GLU161 4.8 29.1 1.0 HG2 A:MET162 4.9 16.4 0.7 CD A:PRO163 4.9 16.3 1.0 HD2 A:PRO163 5.0 19.6 1.0

E.Sijbesma, B.A.Somsen, G.P.Miley, I.A.Leijten-Van De Gevel, L.Brunsveld, M.R.Arkin, C.Ottmann. Fluorescence Anisotropy-Based Tethering For Discovery of Protein-Protein Interaction Stabilizers. Acs Chem.Biol. 2020.
ISSN: ESSN 1554-8937
PubMed: 33196173
DOI: 10.1021/ACSCHEMBIO.0C00646