Atomistry » Magnesium » PDB 6y0y-6yac » 6y1i
Atomistry »
  Magnesium »
    PDB 6y0y-6yac »
      6y1i »

Magnesium in PDB 6y1i: Human EG5 Motor Domain Mutant R234C

Protein crystallography data

The structure of Human EG5 Motor Domain Mutant R234C, PDB code: 6y1i was solved by I.Garcia-Saez, D.A.Skoufias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.70 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 87.428, 87.603, 95.065, 90, 116.82, 90
R / Rfree (%) 27.2 / 30.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human EG5 Motor Domain Mutant R234C (pdb code 6y1i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human EG5 Motor Domain Mutant R234C, PDB code: 6y1i:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6y1i

Go back to Magnesium Binding Sites List in 6y1i
Magnesium binding site 1 out of 3 in the Human EG5 Motor Domain Mutant R234C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human EG5 Motor Domain Mutant R234C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:57.8
occ:1.00
O1B A:ADP401 2.0 96.7 1.0
OG1 A:THR112 2.3 88.4 1.0
O3B A:ADP401 2.7 96.2 1.0
PB A:ADP401 2.9 93.3 1.0
O1A A:ADP401 3.2 84.2 1.0
CB A:THR112 3.3 88.3 1.0
PA A:ADP401 3.9 71.6 1.0
O3A A:ADP401 3.9 55.8 1.0
O2B A:ADP401 4.1 62.6 1.0
O2A A:ADP401 4.1 78.0 1.0
N A:THR112 4.2 77.2 1.0
CG2 A:THR112 4.3 107.0 1.0
CA A:THR112 4.4 75.7 1.0
OD2 A:ASP265 4.5 56.9 1.0

Magnesium binding site 2 out of 3 in 6y1i

Go back to Magnesium Binding Sites List in 6y1i
Magnesium binding site 2 out of 3 in the Human EG5 Motor Domain Mutant R234C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human EG5 Motor Domain Mutant R234C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:69.8
occ:1.00
OG1 B:THR112 2.2 91.4 1.0
O3B B:ADP401 2.3 102.8 1.0
O1A B:ADP401 3.0 73.7 1.0
CB B:THR112 3.1 91.8 1.0
O1B B:ADP401 3.2 144.6 1.0
PB B:ADP401 3.3 113.2 1.0
PA B:ADP401 3.8 95.1 1.0
CG2 B:THR112 4.0 105.3 1.0
O3A B:ADP401 4.1 66.9 1.0
O2A B:ADP401 4.1 54.7 1.0
N B:THR112 4.2 88.2 1.0
CA B:THR112 4.3 87.4 1.0
O2B B:ADP401 4.6 54.3 1.0
OD2 B:ASP265 4.7 79.1 1.0
OG B:SER232 4.9 153.0 1.0

Magnesium binding site 3 out of 3 in 6y1i

Go back to Magnesium Binding Sites List in 6y1i
Magnesium binding site 3 out of 3 in the Human EG5 Motor Domain Mutant R234C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human EG5 Motor Domain Mutant R234C within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:331.3
occ:1.00
OG1 C:THR112 2.0 407.4 1.0
O2B C:ADP401 2.4 424.8 1.0
O3B C:ADP401 3.0 401.2 1.0
PB C:ADP401 3.2 407.6 1.0
CB C:THR112 3.2 359.3 1.0
O1A C:ADP401 3.7 416.1 1.0
O2A C:ADP401 3.8 409.7 1.0
CG2 C:THR112 4.1 342.8 1.0
PA C:ADP401 4.1 409.9 1.0
O3A C:ADP401 4.2 416.3 1.0
OD2 C:ASP265 4.3 328.2 1.0
N C:THR112 4.3 373.8 1.0
CA C:THR112 4.3 366.8 1.0
O1B C:ADP401 4.4 377.8 1.0
OG C:SER232 4.8 374.3 1.0
OD1 C:ASP265 5.0 329.2 1.0

Reference:

I.Garcia-Saez, D.A.Skoufias. Human EG5 Motor Domain Mutant R234C To Be Published.
Page generated: Wed Oct 2 00:06:38 2024

Last articles

Cl in 2OX0
Cl in 2OWQ
Cl in 2OW0
Cl in 2OW1
Cl in 2OW2
Cl in 2OVX
Cl in 2OVZ
Cl in 2OUI
Cl in 2OTL
Cl in 2OTJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy