Magnesium in PDB 6y6a: Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid

The structure of Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid, PDB code: 6y6a was solved by L.J.Stroh, N.H.Rustmeier, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.94 / 2.65
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	86.496, 172.063, 245.616, 107.09, 97.93, 93.93
R / Rfree (%)	24.5 / 26.7

The structure of Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid also contains other interesting chemical elements:

Chlorine

(Cl)

53 atoms

The binding sites of Magnesium atom in the Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid (pdb code 6y6a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid, PDB code: 6y6a:

Magnesium binding site 1 out of 1 in the Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Finch Polyomavirus VP1 in Complex with 2-O-Methyl-5-N- Acetyl-Alpha-D-Neuraminic Acid within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg405 b:12.2 occ:1.00 O C:HOH504 2.9 18.1 1.0 OE1 C:GLU88 4.0 45.1 1.0 CD C:GLU88 5.0 42.2 1.0

L.J.Stroh, N.H.Rustmeier, B.S.Blaum, J.Botsch, P.Rossler, F.Wedekink, W.I.Lipkin, N.Mishra, T.Stehle. Structural Basis and Evolution of Glycan Receptor Specificities Within the Polyomavirus Family. Mbio V. 11 2020.
ISSN: ESSN 2150-7511
PubMed: 32723915
DOI: 10.1128/MBIO.00745-20