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Magnesium in PDB 6y8c: Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24)

Enzymatic activity of Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24)

All present enzymatic activity of Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24):
2.7.11.11;

Protein crystallography data

The structure of Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24), PDB code: 6y8c was solved by M.Oebbeke, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.32 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.980, 78.916, 88.388, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24) (pdb code 6y8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24), PDB code: 6y8c:

Magnesium binding site 1 out of 1 in 6y8c

Go back to Magnesium Binding Sites List in 6y8c
Magnesium binding site 1 out of 1 in the Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Camp-Dependent Protein Kinase A Cocrystallized with Atp and Pki (5-24) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:19.2
occ:1.00
 O1A A:ATP402 2.0 19.0 1.0
O A:HOH647 2.0 21.5 1.0
OD2 A:ASP184 2.1 16.2 1.0
O2B A:ATP402 2.1 20.1 1.0
O A:HOH672 2.2 20.7 1.0
OD1 A:ASN171 2.2 17.8 1.0
CG A:ASP184 3.0 11.7 1.0
CG A:ASN171 3.2 16.9 1.0
PA A:ATP402 3.3 17.7 1.0
PB A:ATP402 3.3 22.3 1.0
CB A:ASP184 3.5 12.6 1.0
O3A A:ATP402 3.6 19.3 1.0
ND2 A:ASN171 3.6 17.4 1.0
O3B A:ATP402 3.9 19.1 1.0
O A:HOH521 3.9 38.1 1.0
OD1 A:ASP184 4.1 15.3 1.0
O B:HOH217 4.2 23.1 0.5
O A:HOH519 4.3 27.2 1.0
O2A A:ATP402 4.3 17.1 1.0
O5' A:ATP402 4.3 19.6 1.0
C5' A:ATP402 4.4 16.1 1.0
CB A:ASN171 4.5 15.0 1.0
O3' A:ATP402 4.6 19.4 1.0
O1B A:ATP402 4.6 34.0 1.0
OD2 A:ASP166 4.7 21.3 1.0
O A:GLU170 4.9 18.9 1.0
CA A:ASP184 4.9 13.2 1.0
CA A:ASN171 4.9 13.1 1.0
CE A:LYS168 4.9 20.9 1.0
O B:HOH217 4.9 22.0 0.5

Reference:

M.Oebbeke, B.Wienen-Schmidt, H.-D.Gerber, A.Heine, G.Klebe. A Crystallographic Study of Camp-Dependent Protein Kinase A in Complex with Different Fasudil-Derivatives To Be Published.
Page generated: Wed Oct 2 00:12:16 2024

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