Magnesium in PDB 6yac: Plant Psi-Ferredoxin Supercomplex

All present enzymatic activity of Plant Psi-Ferredoxin Supercomplex:
1.97.1.12;

The structure of Plant Psi-Ferredoxin Supercomplex also contains other interesting chemical elements:

Iron	(Fe)	14 atoms
Calcium	(Ca)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 157;

Binding sites:

The binding sites of Magnesium atom in the Plant Psi-Ferredoxin Supercomplex (pdb code 6yac). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 157 binding sites of Magnesium where determined in the Plant Psi-Ferredoxin Supercomplex, PDB code: 6yac:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1011 b:21.4 occ:1.00 MG A:CL01011 0.0 21.4 1.0 ND A:CL01011 2.0 21.4 1.0 NB A:CL01011 2.0 21.4 1.0 NC A:CL01011 2.1 21.4 1.0 NA A:CL01011 2.3 21.4 1.0 NE2 A:HIS683 2.9 20.1 1.0 C4D A:CL01011 3.0 21.4 1.0 C4B A:CL01011 3.0 21.4 1.0 C1B A:CL01011 3.1 21.4 1.0 C1C A:CL01011 3.1 21.4 1.0 C1D A:CL01011 3.1 21.4 1.0 C4C A:CL01011 3.2 21.4 1.0 C4A A:CL01011 3.2 21.4 1.0 C1A A:CL01011 3.2 21.4 1.0 CHC A:CL01011 3.3 21.4 1.0 CHB A:CL01011 3.4 21.4 1.0 CHD A:CL01011 3.5 21.4 1.0 CHA A:CL01011 3.5 21.4 1.0 CD2 A:HIS683 3.8 20.1 1.0 CAB B:CLA1021 3.8 22.3 1.0 C3B B:CLA1021 3.9 22.3 1.0 CE1 A:HIS683 3.9 20.1 1.0 C4B B:CLA1021 4.0 22.3 1.0 CHC B:CLA1021 4.0 22.3 1.0 C3D A:CL01011 4.2 21.4 1.0 C3B A:CL01011 4.3 21.4 1.0 C2B A:CL01011 4.4 21.4 1.0 C2D A:CL01011 4.4 21.4 1.0 C2C A:CL01011 4.4 21.4 1.0 C3C A:CL01011 4.4 21.4 1.0 C3A A:CL01011 4.5 21.4 1.0 C2A A:CL01011 4.6 21.4 1.0 C2B B:CLA1021 4.6 22.3 1.0 NB B:CLA1021 4.7 22.3 1.0 C1C B:CLA1021 4.8 22.3 1.0 CBB B:CLA1021 4.8 22.3 1.0

Magnesium binding site 2 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1012 b:22.5 occ:1.00 MG A:CLA1012 0.0 22.5 1.0 ND A:CLA1012 2.0 22.5 1.0 NB A:CLA1012 2.0 22.5 1.0 NC A:CLA1012 2.1 22.5 1.0 NA A:CLA1012 2.2 22.5 1.0 C4D A:CLA1012 2.9 22.5 1.0 C4B A:CLA1012 3.0 22.5 1.0 C1C A:CLA1012 3.1 22.5 1.0 C1B A:CLA1012 3.1 22.5 1.0 C1D A:CLA1012 3.1 22.5 1.0 C4A A:CLA1012 3.2 22.5 1.0 C4C A:CLA1012 3.2 22.5 1.0 C1A A:CLA1012 3.2 22.5 1.0 CHC A:CLA1012 3.3 22.5 1.0 CBB A:CLA1013 3.4 22.9 1.0 CHA A:CLA1012 3.4 22.5 1.0 CHB A:CLA1012 3.4 22.5 1.0 CHD A:CLA1012 3.5 22.5 1.0 C3D A:CLA1012 4.1 22.5 1.0 CAB A:CLA1013 4.2 22.9 1.0 C3B A:CLA1012 4.2 22.5 1.0 C2D A:CLA1012 4.2 22.5 1.0 C2B A:CLA1012 4.3 22.5 1.0 C2C A:CLA1012 4.4 22.5 1.0 ND2 B:ASN585 4.4 20.7 1.0 C3C A:CLA1012 4.4 22.5 1.0 CB A:ALA687 4.4 19.9 1.0 C3A A:CLA1012 4.5 22.5 1.0 C2A A:CLA1012 4.5 22.5 1.0 C2 B:CLA1021 4.9 22.3 1.0 CBD A:CLA1012 4.9 22.5 1.0 OD1 B:ASN585 4.9 20.7 1.0 C5 B:CLA1021 4.9 22.3 1.0 CG B:ASN585 5.0 20.7 1.0

Magnesium binding site 3 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1013 b:22.9 occ:1.00 MG A:CLA1013 0.0 22.9 1.0 ND A:CLA1013 2.0 22.9 1.0 NB A:CLA1013 2.0 22.9 1.0 NC A:CLA1013 2.1 22.9 1.0 NA A:CLA1013 2.2 22.9 1.0 C4D A:CLA1013 2.9 22.9 1.0 C4B A:CLA1013 3.0 22.9 1.0 C1C A:CLA1013 3.0 22.9 1.0 C1B A:CLA1013 3.1 22.9 1.0 C1D A:CLA1013 3.1 22.9 1.0 C4A A:CLA1013 3.1 22.9 1.0 C4C A:CLA1013 3.2 22.9 1.0 C1A A:CLA1013 3.2 22.9 1.0 CE A:MET691 3.3 21.4 1.0 CHC A:CLA1013 3.3 22.9 1.0 CHB A:CLA1013 3.4 22.9 1.0 NE1 B:TRP582 3.5 19.9 1.0 CHA A:CLA1013 3.5 22.9 1.0 CHD A:CLA1013 3.5 22.9 1.0 SD A:MET691 3.7 21.4 1.0 CG A:MET691 4.1 21.4 1.0 CZ2 B:TRP582 4.1 19.9 1.0 CE2 B:TRP582 4.1 19.9 1.0 C3D A:CLA1013 4.1 22.9 1.0 C3B A:CLA1013 4.2 22.9 1.0 C2B A:CLA1013 4.3 22.9 1.0 C2D A:CLA1013 4.3 22.9 1.0 C2C A:CLA1013 4.4 22.9 1.0 C3C A:CLA1013 4.4 22.9 1.0 CB A:MET691 4.4 21.4 1.0 C3A A:CLA1013 4.5 22.9 1.0 C2A A:CLA1013 4.5 22.9 1.0 CD1 B:TRP582 4.6 19.9 1.0 CMC A:CLA1012 4.9 22.5 1.0 CBD A:CLA1013 4.9 22.9 1.0

Magnesium binding site 4 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:37.1 occ:1.00 MG A:CLA1101 0.0 37.1 1.0 ND A:CLA1101 2.0 37.1 1.0 NB A:CLA1101 2.0 37.1 1.0 NC A:CLA1101 2.1 37.1 1.0 NA A:CLA1101 2.2 37.1 1.0 NE2 A:HIS58 2.8 32.5 1.0 C4D A:CLA1101 2.9 37.1 1.0 C4B A:CLA1101 3.0 37.1 1.0 C1C A:CLA1101 3.0 37.1 1.0 C1B A:CLA1101 3.1 37.1 1.0 C1D A:CLA1101 3.1 37.1 1.0 C4A A:CLA1101 3.2 37.1 1.0 C4C A:CLA1101 3.2 37.1 1.0 C1A A:CLA1101 3.2 37.1 1.0 CHC A:CLA1101 3.3 37.1 1.0 CHA A:CLA1101 3.4 37.1 1.0 CHB A:CLA1101 3.4 37.1 1.0 CHD A:CLA1101 3.5 37.1 1.0 CE1 A:HIS58 3.6 32.5 1.0 CG J:PRO12 3.6 38.3 1.0 CD2 A:HIS58 3.9 32.5 1.0 CB J:PRO12 4.0 38.3 1.0 C3D A:CLA1101 4.1 37.1 1.0 C3B A:CLA1101 4.2 37.1 1.0 C2B A:CLA1101 4.3 37.1 1.0 C2D A:CLA1101 4.3 37.1 1.0 C2C A:CLA1101 4.3 37.1 1.0 C3C A:CLA1101 4.4 37.1 1.0 C3A A:CLA1101 4.5 37.1 1.0 C2A A:CLA1101 4.5 37.1 1.0 CD J:PRO12 4.5 38.3 1.0 C22 J:LUT4013 4.7 43.0 1.0 ND1 A:HIS58 4.8 32.5 1.0 O23 J:LUT4013 4.8 43.0 1.0 CBD A:CLA1101 4.9 37.1 1.0 CG A:HIS58 5.0 32.5 1.0

Magnesium binding site 5 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:38.8 occ:1.00 MG A:CLA1102 0.0 38.8 1.0 ND A:CLA1102 2.0 38.8 1.0 NB A:CLA1102 2.0 38.8 1.0 NC A:CLA1102 2.1 38.8 1.0 NA A:CLA1102 2.2 38.8 1.0 NE2 A:HIS62 2.7 33.5 1.0 C4D A:CLA1102 2.9 38.8 1.0 C4B A:CLA1102 3.0 38.8 1.0 C1C A:CLA1102 3.0 38.8 1.0 C1B A:CLA1102 3.1 38.8 1.0 C1D A:CLA1102 3.1 38.8 1.0 C4C A:CLA1102 3.1 38.8 1.0 C4A A:CLA1102 3.1 38.8 1.0 C1A A:CLA1102 3.2 38.8 1.0 CHC A:CLA1102 3.3 38.8 1.0 CE1 A:HIS62 3.4 33.5 1.0 CHB A:CLA1102 3.4 38.8 1.0 CHA A:CLA1102 3.4 38.8 1.0 CHD A:CLA1102 3.5 38.8 1.0 CD2 A:HIS62 3.8 33.5 1.0 C7 A:CLA1109 4.1 41.7 1.0 C3D A:CLA1102 4.2 38.8 1.0 C3B A:CLA1102 4.3 38.8 1.0 C10 A:CLA1109 4.3 41.7 1.0 C2B A:CLA1102 4.3 38.8 1.0 C2D A:CLA1102 4.3 38.8 1.0 C2C A:CLA1102 4.4 38.8 1.0 C3C A:CLA1102 4.4 38.8 1.0 C3A A:CLA1102 4.5 38.8 1.0 C2A A:CLA1102 4.5 38.8 1.0 ND1 A:HIS62 4.7 33.5 1.0 C6 A:CLA1109 4.7 41.7 1.0 C8 A:CLA1109 4.7 41.7 1.0 CBB A:CLA1101 4.8 37.1 1.0 C5 A:CLA1109 4.9 41.7 1.0 CG A:HIS62 4.9 33.5 1.0 CAB A:CLA1101 4.9 37.1 1.0 CBD A:CLA1102 4.9 38.8 1.0

Magnesium binding site 6 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:28.8 occ:1.00 MG A:CLA1103 0.0 28.8 1.0 ND A:CLA1103 2.0 28.8 1.0 NB A:CLA1103 2.0 28.8 1.0 NC A:CLA1103 2.1 28.8 1.0 NA A:CLA1103 2.2 28.8 1.0 NE2 A:HIS82 2.7 29.5 1.0 C4D A:CLA1103 2.9 28.8 1.0 C4B A:CLA1103 3.0 28.8 1.0 C1C A:CLA1103 3.0 28.8 1.0 C1B A:CLA1103 3.1 28.8 1.0 C1D A:CLA1103 3.1 28.8 1.0 CMB A:CLA1128 3.1 27.1 1.0 C4A A:CLA1103 3.2 28.8 1.0 C1A A:CLA1103 3.2 28.8 1.0 C4C A:CLA1103 3.2 28.8 1.0 CHC A:CLA1103 3.3 28.8 1.0 CHA A:CLA1103 3.4 28.8 1.0 CHB A:CLA1103 3.4 28.8 1.0 CD2 A:HIS82 3.5 29.5 1.0 CHD A:CLA1103 3.5 28.8 1.0 CE1 A:HIS82 3.8 29.5 1.0 C3D A:CLA1103 4.1 28.8 1.0 C3B A:CLA1103 4.2 28.8 1.0 C2B A:CLA1103 4.3 28.8 1.0 C2D A:CLA1103 4.3 28.8 1.0 C2C A:CLA1103 4.3 28.8 1.0 C3C A:CLA1103 4.4 28.8 1.0 C3A A:CLA1103 4.5 28.8 1.0 C2A A:CLA1103 4.5 28.8 1.0 CBB A:CLA1128 4.5 27.1 1.0 C2B A:CLA1128 4.6 27.1 1.0 CG A:HIS82 4.7 29.5 1.0 ND1 A:HIS82 4.8 29.5 1.0 CG1 A:VAL78 4.8 32.4 1.0 CBD A:CLA1103 4.9 28.8 1.0

Magnesium binding site 7 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1104 b:27.6 occ:1.00 MG A:CLA1104 0.0 27.6 1.0 ND A:CLA1104 2.0 27.6 1.0 NB A:CLA1104 2.0 27.6 1.0 NC A:CLA1104 2.1 27.6 1.0 NA A:CLA1104 2.2 27.6 1.0 OE1 A:GLN85 2.8 27.9 1.0 C4D A:CLA1104 2.9 27.6 1.0 C4B A:CLA1104 3.0 27.6 1.0 C1C A:CLA1104 3.0 27.6 1.0 C1B A:CLA1104 3.1 27.6 1.0 C1D A:CLA1104 3.1 27.6 1.0 C4A A:CLA1104 3.1 27.6 1.0 C4C A:CLA1104 3.2 27.6 1.0 C1A A:CLA1104 3.2 27.6 1.0 CHC A:CLA1104 3.3 27.6 1.0 C17 A:CLA1104 3.4 27.6 1.0 CHB A:CLA1104 3.4 27.6 1.0 CHA A:CLA1104 3.5 27.6 1.0 CHD A:CLA1104 3.5 27.6 1.0 CD A:GLN85 3.6 27.9 1.0 NE2 A:GLN85 4.0 27.9 1.0 C3D A:CLA1104 4.1 27.6 1.0 C3B A:CLA1104 4.2 27.6 1.0 C18 A:CLA1104 4.2 27.6 1.0 C2B A:CLA1104 4.3 27.6 1.0 C2D A:CLA1104 4.3 27.6 1.0 C2C A:CLA1104 4.3 27.6 1.0 C15 A:CLA1104 4.3 27.6 1.0 C3C A:CLA1104 4.4 27.6 1.0 C16 A:CLA1104 4.4 27.6 1.0 C3A A:CLA1104 4.5 27.6 1.0 C2A A:CLA1104 4.5 27.6 1.0 CMA A:CLA1103 4.9 28.8 1.0 CG A:GLN85 4.9 27.9 1.0 CBD A:CLA1104 4.9 27.6 1.0 C13 A:CLA1104 5.0 27.6 1.0

Magnesium binding site 8 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1105 b:37.0 occ:1.00 MG A:CLA1105 0.0 37.0 1.0 ND A:CLA1105 2.0 37.0 1.0 NB A:CLA1105 2.0 37.0 1.0 NC A:CLA1105 2.1 37.0 1.0 NA A:CLA1105 2.2 37.0 1.0 CE1 A:HIS99 2.9 33.5 1.0 C4D A:CLA1105 2.9 37.0 1.0 C4B A:CLA1105 3.0 37.0 1.0 C1C A:CLA1105 3.0 37.0 1.0 C1B A:CLA1105 3.1 37.0 1.0 C1D A:CLA1105 3.1 37.0 1.0 C4A A:CLA1105 3.2 37.0 1.0 C1A A:CLA1105 3.2 37.0 1.0 C4C A:CLA1105 3.2 37.0 1.0 CHC A:CLA1105 3.3 37.0 1.0 CHB A:CLA1105 3.4 37.0 1.0 CHA A:CLA1105 3.5 37.0 1.0 CHD A:CLA1105 3.5 37.0 1.0 NE2 A:HIS99 3.7 33.5 1.0 ND1 A:HIS99 3.8 33.5 1.0 C3D A:CLA1105 4.1 37.0 1.0 C3B A:CLA1105 4.2 37.0 1.0 C10 A:LMT5004 4.3 43.0 1.0 C2D A:CLA1105 4.3 37.0 1.0 C2B A:CLA1105 4.3 37.0 1.0 C2C A:CLA1105 4.4 37.0 1.0 C8 A:LMT5004 4.4 43.0 1.0 C3C A:CLA1105 4.4 37.0 1.0 C9 A:LMT5004 4.4 43.0 1.0 C11 A:LMT5004 4.5 43.0 1.0 C3A A:CLA1105 4.5 37.0 1.0 C2A A:CLA1105 4.5 37.0 1.0 O1A A:CLA1105 4.8 37.0 1.0 CBD A:CLA1105 4.9 37.0 1.0 CD2 A:HIS99 5.0 33.5 1.0

Magnesium binding site 9 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1106 b:29.6 occ:1.00 MG A:CLA1106 0.0 29.6 1.0 ND A:CLA1106 2.0 29.6 1.0 NB A:CLA1106 2.0 29.6 1.0 NC A:CLA1106 2.1 29.6 1.0 NA A:CLA1106 2.2 29.6 1.0 OE1 A:GLN121 2.8 32.0 1.0 C4D A:CLA1106 2.9 29.6 1.0 C4B A:CLA1106 3.0 29.6 1.0 C1C A:CLA1106 3.0 29.6 1.0 C1B A:CLA1106 3.1 29.6 1.0 C1D A:CLA1106 3.1 29.6 1.0 C4A A:CLA1106 3.2 29.6 1.0 C1A A:CLA1106 3.2 29.6 1.0 C4C A:CLA1106 3.2 29.6 1.0 CHC A:CLA1106 3.3 29.6 1.0 CHB A:CLA1106 3.4 29.6 1.0 CHA A:CLA1106 3.4 29.6 1.0 CHD A:CLA1106 3.5 29.6 1.0 CD A:GLN121 3.7 32.0 1.0 NE2 A:GLN121 3.8 32.0 1.0 C2 A:CLA1126 3.9 25.9 1.0 C6 A:CLA1126 3.9 25.9 1.0 C3D A:CLA1106 4.1 29.6 1.0 C3B A:CLA1106 4.2 29.6 1.0 C2B A:CLA1106 4.3 29.6 1.0 C2D A:CLA1106 4.3 29.6 1.0 C5 A:CLA1126 4.3 25.9 1.0 C2C A:CLA1106 4.4 29.6 1.0 C3C A:CLA1106 4.4 29.6 1.0 C3A A:CLA1106 4.5 29.6 1.0 C2A A:CLA1106 4.5 29.6 1.0 C3 A:CLA1126 4.5 25.9 1.0 C1 A:CLA1126 4.9 25.9 1.0 CBD A:CLA1106 4.9 29.6 1.0

Magnesium binding site 10 out of 157 in the Plant Psi-Ferredoxin Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Plant Psi-Ferredoxin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1107 b:34.5 occ:1.00 MG A:CLA1107 0.0 34.5 1.0 ND A:CLA1107 2.0 34.5 1.0 NB A:CLA1107 2.0 34.5 1.0 NC A:CLA1107 2.1 34.5 1.0 NA A:CLA1107 2.2 34.5 1.0 OE1 A:GLN129 2.7 33.4 1.0 C4D A:CLA1107 2.9 34.5 1.0 C4B A:CLA1107 3.0 34.5 1.0 C1C A:CLA1107 3.0 34.5 1.0 C1B A:CLA1107 3.1 34.5 1.0 C1D A:CLA1107 3.1 34.5 1.0 C4A A:CLA1107 3.2 34.5 1.0 C4C A:CLA1107 3.2 34.5 1.0 C1A A:CLA1107 3.2 34.5 1.0 CHC A:CLA1107 3.3 34.5 1.0 CHB A:CLA1107 3.4 34.5 1.0 CHA A:CLA1107 3.4 34.5 1.0 CHD A:CLA1107 3.5 34.5 1.0 CD A:GLN129 3.8 33.4 1.0 C17 A:CLA1126 3.9 25.9 1.0 C3D A:CLA1107 4.1 34.5 1.0 C3B A:CLA1107 4.2 34.5 1.0 NE2 A:GLN129 4.3 33.4 1.0 C2B A:CLA1107 4.3 34.5 1.0 C2D A:CLA1107 4.3 34.5 1.0 C2C A:CLA1107 4.4 34.5 1.0 C16 A:CLA1126 4.4 25.9 1.0 C3C A:CLA1107 4.4 34.5 1.0 C3A A:CLA1107 4.5 34.5 1.0 C2A A:CLA1107 4.5 34.5 1.0 C18 A:CLA1126 4.5 25.9 1.0 CBD A:CLA1107 4.9 34.5 1.0 CG A:GLN129 5.0 33.4 1.0

I.Caspy, A.Borovikova-Sheinker, D.Klaiman, Y.Shkolnisky, N.Nelson. The Structure of A Triple Complex of Plant Photosystem I with Ferredoxin and Plastocyanin. Nat.Plants V. 6 1300 2020.
ISSN: ESSN 2055-0278
PubMed: 33020607
DOI: 10.1038/S41477-020-00779-9