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Magnesium in PDB 6yav: Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii

Protein crystallography data

The structure of Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii, PDB code: 6yav was solved by B.V.Kabasakal, W.K.A.Kung, C.A.R.Cotton, L.Lieber, C.R.Mcfarlane, J.W.Murray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.30 / 1.65
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 134.24, 135.1, 37.09, 90, 90, 90
R / Rfree (%) 19.8 / 22.5

Other elements in 6yav:

The structure of Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii also contains other interesting chemical elements:

Iron (Fe) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii (pdb code 6yav). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii, PDB code: 6yav:

Magnesium binding site 1 out of 1 in 6yav

Go back to Magnesium Binding Sites List in 6yav
Magnesium binding site 1 out of 1 in the Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg203

b:46.6
occ:1.00
O E:HOH343 2.1 54.5 1.0
O E:HOH322 2.2 31.6 1.0
O E:SER8 2.3 37.2 1.0
O E:MET11 2.3 40.2 1.0
C E:SER8 3.4 38.1 1.0
C E:MET11 3.5 39.7 1.0
N E:SER8 3.9 29.7 1.0
N E:MET11 4.1 41.5 1.0
CA E:MET11 4.1 39.0 1.0
CB E:MET11 4.2 33.0 1.0
N E:PRO9 4.2 37.5 1.0
CA E:PRO9 4.3 39.0 1.0
CA E:SER8 4.3 31.0 1.0
OG E:SER7 4.4 40.6 1.0
OD1 E:ASN14 4.4 33.6 1.0
C E:PRO12 4.4 40.5 1.0
O E:PRO12 4.4 43.8 1.0
C E:PRO9 4.5 40.3 1.0
N E:PRO12 4.5 43.0 1.0
CA E:PRO12 4.6 40.2 1.0
O E:PRO9 4.7 49.7 1.0
N E:HIS13 4.8 39.5 1.0
C E:SER7 5.0 30.0 1.0
N E:LEU10 5.0 37.0 1.0

Reference:

B.V.Kabasakal, W.K.A.Kung, C.A.R.Cotton, L.Lieber, C.R.Mcfarlane, J.W.Murray. Structure of Fesii (Shethna) Protein From Azotobacter Vinelandii To Be Published.
Page generated: Wed Oct 2 00:15:11 2024

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