Magnesium in PDB 6ybs: Structure of A Human 48S Translational Initiation Complex - Head

All present enzymatic activity of Structure of A Human 48S Translational Initiation Complex - Head:
4.2.99.18;

The structure of Structure of A Human 48S Translational Initiation Complex - Head also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Human 48S Translational Initiation Complex - Head (pdb code 6ybs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 29 binding sites of Magnesium where determined in the Structure of A Human 48S Translational Initiation Complex - Head, PDB code: 6ybs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ f:Mg201 b:56.0 occ:1.00 O f:THR136 2.5 50.5 1.0 O f:THR139 2.6 50.5 1.0 CG2 f:THR136 3.3 50.5 1.0 C f:THR136 3.6 50.5 1.0 C f:THR139 3.7 50.5 1.0 OP2 A:A1522 3.9 58.2 1.0 CA f:THR136 4.0 50.5 1.0 O2' A:C1521 4.1 54.1 1.0 C f:GLY140 4.1 55.1 1.0 CB f:THR136 4.2 50.5 1.0 O f:GLY140 4.2 55.1 1.0 CG f:ARG141 4.3 56.8 1.0 CA f:GLY140 4.3 55.1 1.0 C2' A:C1521 4.4 54.1 1.0 N f:ARG141 4.4 56.8 1.0 N f:GLY140 4.4 55.1 1.0 N f:THR139 4.5 50.5 1.0 OP2 A:C1523 4.7 56.3 1.0 N f:LYS137 4.7 50.4 1.0 CA f:THR139 4.8 50.5 1.0 CA f:ARG141 4.8 56.8 1.0 C f:LYS137 4.9 50.4 1.0 O f:LYS137 4.9 50.4 1.0

Magnesium binding site 2 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:53.6 occ:1.00 OP2 A:A1217 2.1 57.3 1.0 OP1 A:U1643 2.1 49.8 1.0 P A:A1217 3.2 57.3 1.0 P A:U1643 3.3 49.8 1.0 O5' A:A1217 3.3 57.3 1.0 OP2 A:U1643 3.7 49.8 1.0 O3' A:A1217 4.0 57.3 1.0 OP1 A:C1218 4.1 55.3 1.0 O5' A:U1643 4.1 49.8 1.0 OP1 A:A1217 4.2 57.3 1.0 O3' A:C1216 4.3 55.8 1.0 O3' A:U1642 4.5 56.0 1.0 C5' A:A1217 4.5 57.3 1.0 P A:C1218 4.6 55.3 1.0 C4' A:A1217 4.7 57.3 1.0 C3' A:A1217 4.9 57.3 1.0 C5' A:U1643 5.0 49.8 1.0

Magnesium binding site 3 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:40.4 occ:1.00 OP2 A:JMH1219 2.1 55.1 1.0 P A:JMH1219 3.4 55.1 1.0 O6 A:G1221 3.9 50.1 1.0 OP1 A:JMH1219 4.0 55.1 1.0 O5' A:JMH1219 4.2 55.1 1.0 N7 A:G1221 4.3 50.1 1.0 O3' A:C1218 4.6 55.3 1.0 C6 A:G1221 4.8 50.1 1.0 C5 A:G1221 4.9 50.1 1.0 C3' A:C1218 5.0 55.3 1.0

Magnesium binding site 4 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:33.3 occ:1.00 OP1 A:U1225 3.4 50.1 1.0 O3' A:G1224 4.0 49.0 1.0 P A:U1225 4.3 50.1 1.0 O4 A:U1530 4.7 44.8 1.0 C5 A:U1530 4.9 44.8 1.0

Magnesium binding site 5 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1904 b:43.5 occ:1.00 OP1 A:G1226 2.1 51.2 1.0 OP2 A:G1227 2.5 48.9 1.0 P A:G1226 3.0 51.2 1.0 OP2 A:G1226 3.3 51.2 1.0 O5' A:G1226 3.7 51.2 1.0 P A:G1227 3.9 48.9 1.0 N7 A:A1228 4.1 47.3 1.0 C5' A:G1226 4.3 51.2 1.0 O6 A:G1528 4.4 44.0 1.0 O3' A:U1225 4.4 50.1 1.0 O6 A:G1229 4.5 46.2 1.0 N6 A:A1228 4.5 47.3 1.0 O5' A:G1227 4.5 48.9 1.0 OP1 A:G1227 4.7 48.9 1.0 C5 A:A1228 4.9 47.3 1.0 OP2 A:A1228 4.9 47.3 1.0 C8 A:A1228 4.9 47.3 1.0 O3' A:G1226 5.0 51.2 1.0

Magnesium binding site 6 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1905 b:53.7 occ:1.00 OP1 A:U1340 2.1 57.3 1.0 O2 A:C1216 3.5 55.8 1.0 P A:U1340 3.5 57.3 1.0 OP1 A:A1250 3.6 53.6 1.0 O3' A:U1339 4.0 52.0 1.0 N3 A:C1216 4.2 55.8 1.0 C2 A:C1216 4.3 55.8 1.0 OP2 A:U1340 4.4 57.3 1.0 O5' A:U1340 4.5 57.3 1.0 OP1 A:U1342 4.6 61.8 1.0 N7 A:A1250 4.7 53.6 1.0 C5' A:U1340 4.8 57.3 1.0 O2' A:C1249 4.9 56.0 1.0 C8 A:A1250 4.9 53.6 1.0 C2' A:C1249 5.0 56.0 1.0

Magnesium binding site 7 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1906 b:37.4 occ:1.00 OP1 A:A1253 2.8 42.4 1.0 OP1 A:C1254 3.7 43.8 1.0 P A:A1253 4.2 42.4 1.0 CE h:LYS75 4.3 42.5 1.0 O2' A:C1527 4.4 45.7 1.0 OP2 A:C1252 4.5 47.1 1.0 O5' A:A1253 4.5 42.4 1.0 O5' A:C1254 4.6 43.8 1.0 CD h:LYS75 4.8 42.5 1.0 P A:C1254 4.8 43.8 1.0 OP1 A:C1252 4.9 47.1 1.0 O5' A:C1252 5.0 47.1 1.0 P A:C1252 5.0 47.1 1.0 OP2 A:A1253 5.0 42.4 1.0

Magnesium binding site 8 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1907 b:39.1 occ:1.00 OP1 A:A1258 2.1 44.8 1.0 P A:A1258 3.5 44.8 1.0 O5' A:A1258 3.9 44.8 1.0 N6 A:A1664 4.3 44.6 1.0 OP2 A:G1255 4.4 43.5 1.0 O2 A:C1666 4.4 42.0 1.0 OP2 A:A1258 4.5 44.8 1.0 O3' A:G1257 4.5 43.3 1.0 O2' A:C1666 4.5 42.0 1.0 N1 A:A1664 4.5 44.6 1.0 C3' A:G1257 4.6 43.3 1.0 N3 A:A1253 4.6 42.4 1.0 O2' A:G1256 4.7 41.8 1.0 OP2 A:G1257 4.8 43.3 1.0 C6 A:A1664 4.9 44.6 1.0 O3' A:G1256 5.0 41.8 1.0

Magnesium binding site 9 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1908 b:43.0 occ:1.00 OP1 A:A1259 2.1 44.9 1.0 OP2 A:A1260 2.2 46.2 1.0 P A:A1259 3.2 44.9 1.0 OP2 A:A1259 3.4 44.9 1.0 P A:A1260 3.6 46.2 1.0 O5' A:A1259 4.3 44.9 1.0 OP1 A:A1260 4.3 46.2 1.0 O3' A:A1258 4.3 44.8 1.0 C5' A:A1259 4.3 44.9 1.0 O5' A:A1260 4.4 46.2 1.0 C3' A:A1259 4.6 44.9 1.0 O3' A:A1259 4.6 44.9 1.0 C5' A:A1260 4.6 46.2 1.0 C2 A:A1663 4.7 48.2 1.0 N1 A:A1663 4.7 48.2 1.0 N3 A:A1259 4.8 44.9 1.0 C2' A:A1258 4.8 44.8 1.0 O2' A:A1258 4.9 44.8 1.0 C2 A:A1259 4.9 44.9 1.0 C3' A:A1258 5.0 44.8 1.0

Magnesium binding site 10 out of 29 in the Structure of A Human 48S Translational Initiation Complex - Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Human 48S Translational Initiation Complex - Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1909 b:44.4 occ:1.00 O6 A:G1517 2.0 46.2 1.0 OP2 A:C1262 2.1 45.9 1.0 O4 A:U1263 2.1 44.8 1.0 OP1 A:C1261 2.6 46.4 1.0 C4 A:U1263 3.0 44.8 1.0 C6 A:G1517 3.2 46.2 1.0 C5 A:U1263 3.3 44.8 1.0 P A:C1262 3.5 45.9 1.0 P A:C1261 3.6 46.4 1.0 O2 A:C1264 3.9 46.2 1.0 N1 A:G1517 4.0 46.2 1.0 N4 A:C1518 4.0 45.9 1.0 OP2 A:C1261 4.0 46.4 1.0 O5' A:C1261 4.0 46.4 1.0 N3 A:C1264 4.1 46.2 1.0 C2 A:C1264 4.2 46.2 1.0 N3 A:U1263 4.3 44.8 1.0 O6 A:G1516 4.3 47.8 1.0 O5' A:C1262 4.3 45.9 1.0 OP1 A:C1262 4.3 45.9 1.0 C5 A:G1517 4.4 46.2 1.0 C5' A:C1261 4.4 46.4 1.0 O3' A:C1261 4.4 46.4 1.0 C6 A:U1263 4.6 44.8 1.0 C3' A:C1261 4.7 46.4 1.0 N7 A:G1517 4.8 46.2 1.0 O2' A:C1264 4.8 46.2 1.0 C4 A:C1518 4.9 45.9 1.0 O2' A:A1259 5.0 44.9 1.0 O3' A:A1260 5.0 46.2 1.0 C4 A:C1264 5.0 46.2 1.0

J.Brito Querido, M.Sokabe, S.Kraatz, Y.Gordiyenko, J.M.Skehel, C.S.Fraser, V.Ramakrishnan. Structure of A Human 48STRANSLATIONAL Initiation Complex. Science V. 369 1220 2020.
ISSN: ESSN 1095-9203
PubMed: 32883864
DOI: 10.1126/SCIENCE.ABA4904