Magnesium in PDB 6ybw: Structure of A Human 48S Translational Initiation Complex - 40S Body

The structure of Structure of A Human 48S Translational Initiation Complex - 40S Body also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Human 48S Translational Initiation Complex - 40S Body (pdb code 6ybw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 60 binding sites of Magnesium where determined in the Structure of A Human 48S Translational Initiation Complex - 40S Body, PDB code: 6ybw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range:

Magnesium binding site 2 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg301 b:78.5 occ:1.00 OE1 S:GLN177 2.1 92.4 1.0 OP1 A:C315 2.1 89.1 1.0 CD S:GLN177 2.9 92.4 1.0 CG S:GLN177 3.3 92.4 1.0 P A:C315 3.4 89.1 1.0 O3' A:U314 3.6 87.6 1.0 N S:ARG178 3.9 87.3 1.0 OP1 A:U172 4.0 79.8 1.0 NE2 S:GLN177 4.0 92.4 1.0 C5' A:C315 4.3 89.1 1.0 O5' A:C315 4.3 89.1 1.0 OP2 A:U172 4.4 79.8 1.0 OP2 A:C315 4.5 89.1 1.0 CA S:ARG178 4.5 87.3 1.0 CB S:GLN177 4.5 92.4 1.0 P A:U172 4.6 79.8 1.0 CA S:GLN177 4.7 92.4 1.0 C S:GLN177 4.8 92.4 1.0 C3' A:U314 5.0 87.6 1.0

Magnesium binding site 3 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:62.2 occ:1.00 O6 A:G431 3.8 39.7 1.0 O6 A:G432 4.0 39.3 1.0 N4 A:C430 4.4 36.9 1.0 N7 A:G431 4.6 39.7 1.0 OP1 A:U428 4.7 44.7 1.0 C6 A:G431 4.7 39.7 1.0 N4 A:C98 4.8 41.3 1.0 O4 A:U97 4.8 42.7 1.0 C5 A:C430 4.8 36.9 1.0 C4 A:C430 4.9 36.9 1.0 C5 A:G431 5.0 39.7 1.0

Magnesium binding site 4 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:62.2 occ:1.00 OP2 A:C632 4.2 62.2 1.0 O6 A:G606 4.5 63.6 1.0 N7 A:A599 4.7 49.0 1.0 N6 A:A599 4.9 49.0 1.0 N6 A:A634 4.9 65.8 1.0 O6 A:G635 4.9 68.3 1.0

Magnesium binding site 5 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:62.2 occ:1.00 OP2 A:G999 3.4 40.8 1.0 OP1 A:A998 3.9 39.2 1.0 O Q:GLY16 4.0 44.5 1.0 OP2 A:A1084 4.3 36.0 1.0 O3' A:G1858 4.4 36.0 1.0 P A:G999 4.6 40.8 1.0 O2' A:G1858 4.6 36.0 1.0 C5' A:A998 4.6 39.2 1.0 N1 A:A1082 4.7 37.1 1.0 O3' A:A998 4.7 39.2 1.0 C Q:GLY16 4.8 44.5 1.0 OP1 A:A1859 4.8 35.2 1.0

Magnesium binding site 6 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1904 b:46.0 occ:1.00 OP2 A:A449 2.1 45.8 1.0 P A:A449 3.5 45.8 1.0 O5' A:A449 3.9 45.8 1.0 O4' A:C450 4.2 47.1 1.0 OP1 A:A435 4.3 46.7 1.0 N4 A:C453 4.3 54.8 1.0 OP1 A:A449 4.4 45.8 1.0 O6 A:G440 4.4 53.7 1.0 O6 A:G452 4.4 50.8 1.0 NZ R:LYS23 4.5 50.0 1.0 O3' A:A448 4.6 46.1 1.0 C1' A:C450 4.6 47.1 1.0 N1 A:C450 4.6 47.1 1.0 C2 A:C450 4.8 47.1 1.0 OP2 A:C450 4.8 47.1 1.0 OP2 A:A435 4.8 46.7 1.0 C3' A:A449 4.8 45.8 1.0 O2 A:C450 4.8 47.1 1.0 P A:A435 5.0 46.7 1.0 C2' A:A449 5.0 45.8 1.0

Magnesium binding site 7 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1905 b:45.8 occ:1.00 OP1 A:C450 3.5 47.1 1.0 OP2 A:C450 3.5 47.1 1.0 OP2 A:G434 3.7 44.2 1.0 P A:C450 3.9 47.1 1.0 OP2 A:A435 4.1 46.7 1.0 OP1 A:A449 4.1 45.8 1.0 OP1 A:A448 4.2 46.1 1.0 C5' A:A449 4.5 45.8 1.0 C4' A:A449 4.6 45.8 1.0 O5' A:G434 4.6 44.2 1.0 P A:G434 4.7 44.2 1.0 O3' A:A449 4.8 45.8 1.0 NH2 R:ARG25 4.8 47.0 1.0 C8 A:G434 4.9 44.2 1.0 C3' A:A449 4.9 45.8 1.0

Magnesium binding site 8 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1906 b:38.3 occ:1.00 OP1 A:G16 2.2 32.6 1.0 P A:G16 3.6 32.6 1.0 O6 A:G659 3.9 62.2 1.0 OP2 A:G16 4.2 32.6 1.0 OP2 A:U657 4.3 37.7 1.0 O2 A:C663 4.3 40.2 1.0 N2 A:G1164 4.3 34.6 1.0 O5' A:G16 4.4 32.6 1.0 C5' A:U657 4.6 37.7 1.0 C5' A:G16 4.6 32.6 1.0 O4' A:U657 4.6 37.7 1.0 O3' A:U15 4.6 29.0 1.0 N1 A:A669 4.7 30.2 1.0 C4' A:U657 4.7 37.7 1.0 O2' A:C663 4.9 40.2 1.0

Magnesium binding site 9 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1907 b:45.1 occ:1.00 OP2 A:G94 2.2 42.6 1.0 P A:G94 3.5 42.6 1.0 O5' A:G94 4.0 42.6 1.0 N7 A:G95 4.3 41.8 1.0 OP1 A:G94 4.3 42.6 1.0 N7 A:G94 4.5 42.6 1.0 O6 A:G95 4.6 41.8 1.0 OP1 A:U93 4.6 43.3 1.0 C8 A:G94 4.6 42.6 1.0 O3' A:U93 4.7 43.3 1.0 OP2 A:U93 4.8 43.3 1.0 O5' A:U93 4.9 43.3 1.0 C3' A:U93 5.0 43.3 1.0

Magnesium binding site 10 out of 60 in the Structure of A Human 48S Translational Initiation Complex - 40S Body


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Human 48S Translational Initiation Complex - 40S Body within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1908 b:43.5 occ:1.00 OP1 A:A654 2.2 37.4 1.0 OP1 A:G656 2.3 38.8 1.0 P A:A654 3.6 37.4 1.0 P A:G656 3.6 38.8 1.0 O6 A:G419 4.0 45.6 1.0 OP2 A:G656 4.0 38.8 1.0 C5' A:A654 4.2 37.4 1.0 O5' A:A654 4.2 37.4 1.0 OP2 A:A654 4.4 37.4 1.0 O5' A:G656 4.5 38.8 1.0 O3' A:A653 4.6 38.9 1.0 O6 A:G662 4.6 41.7 1.0 O3' A:A655 4.7 36.9 1.0 N6 A:A418 4.8 49.3 1.0 N7 A:A418 4.9 49.3 1.0 C3' A:A655 5.0 36.9 1.0

J.Brito Querido, M.Sokabe, S.Kraatz, Y.Gordiyenko, J.M.Skehel, C.S.Fraser, V.Ramakrishnan. Structure of A Human 48STRANSLATIONAL Initiation Complex. Science V. 369 1220 2020.
ISSN: ESSN 1095-9203
PubMed: 32883864
DOI: 10.1126/SCIENCE.ABA4904