Magnesium in PDB 6yez: Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Enzymatic activity of Plant Psi-Ferredoxin-Plastocyanin Supercomplex
All present enzymatic activity of Plant Psi-Ferredoxin-Plastocyanin Supercomplex:
1.97.1.12;
Other elements in 6yez:
The structure of Plant Psi-Ferredoxin-Plastocyanin Supercomplex also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
157;
Binding sites:
The binding sites of Magnesium atom in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
(pdb code 6yez). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 157 binding sites of Magnesium where determined in the
Plant Psi-Ferredoxin-Plastocyanin Supercomplex, PDB code: 6yez:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 1 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1011
b:54.9
occ:1.00
|
MG
|
A:CL01011
|
0.0
|
54.9
|
1.0
|
ND
|
A:CL01011
|
2.0
|
54.9
|
1.0
|
NB
|
A:CL01011
|
2.0
|
54.9
|
1.0
|
NC
|
A:CL01011
|
2.1
|
54.9
|
1.0
|
NA
|
A:CL01011
|
2.3
|
54.9
|
1.0
|
C4D
|
A:CL01011
|
2.9
|
54.9
|
1.0
|
C4B
|
A:CL01011
|
3.0
|
54.9
|
1.0
|
NE2
|
A:HIS683
|
3.0
|
53.1
|
1.0
|
C1B
|
A:CL01011
|
3.0
|
54.9
|
1.0
|
C1C
|
A:CL01011
|
3.1
|
54.9
|
1.0
|
C1D
|
A:CL01011
|
3.1
|
54.9
|
1.0
|
C4C
|
A:CL01011
|
3.1
|
54.9
|
1.0
|
C4A
|
A:CL01011
|
3.2
|
54.9
|
1.0
|
C1A
|
A:CL01011
|
3.2
|
54.9
|
1.0
|
CHC
|
A:CL01011
|
3.3
|
54.9
|
1.0
|
CHB
|
A:CL01011
|
3.5
|
54.9
|
1.0
|
CHA
|
A:CL01011
|
3.5
|
54.9
|
1.0
|
CHD
|
A:CL01011
|
3.5
|
54.9
|
1.0
|
CE1
|
A:HIS683
|
3.9
|
53.1
|
1.0
|
CD2
|
A:HIS683
|
4.0
|
53.1
|
1.0
|
CHC
|
B:CLA1021
|
4.1
|
54.2
|
1.0
|
CAB
|
B:CLA1021
|
4.1
|
54.2
|
1.0
|
C4B
|
B:CLA1021
|
4.2
|
54.2
|
1.0
|
C3D
|
A:CL01011
|
4.2
|
54.9
|
1.0
|
C3B
|
B:CLA1021
|
4.2
|
54.2
|
1.0
|
C3B
|
A:CL01011
|
4.3
|
54.9
|
1.0
|
C2B
|
A:CL01011
|
4.3
|
54.9
|
1.0
|
C2D
|
A:CL01011
|
4.4
|
54.9
|
1.0
|
C2C
|
A:CL01011
|
4.4
|
54.9
|
1.0
|
C3C
|
A:CL01011
|
4.4
|
54.9
|
1.0
|
C3A
|
A:CL01011
|
4.5
|
54.9
|
1.0
|
C2A
|
A:CL01011
|
4.6
|
54.9
|
1.0
|
C1C
|
B:CLA1021
|
4.7
|
54.2
|
1.0
|
NB
|
B:CLA1021
|
4.9
|
54.2
|
1.0
|
CZ
|
A:PHE679
|
4.9
|
56.9
|
1.0
|
C2B
|
B:CLA1021
|
5.0
|
54.2
|
1.0
|
CBD
|
A:CL01011
|
5.0
|
54.9
|
1.0
|
|
Magnesium binding site 2 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 2 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1012
b:58.8
occ:1.00
|
MG
|
A:CLA1012
|
0.0
|
58.8
|
1.0
|
ND
|
A:CLA1012
|
2.0
|
58.8
|
1.0
|
NB
|
A:CLA1012
|
2.0
|
58.8
|
1.0
|
NC
|
A:CLA1012
|
2.1
|
58.8
|
1.0
|
NA
|
A:CLA1012
|
2.2
|
58.8
|
1.0
|
C4D
|
A:CLA1012
|
2.9
|
58.8
|
1.0
|
C4B
|
A:CLA1012
|
3.0
|
58.8
|
1.0
|
C1C
|
A:CLA1012
|
3.0
|
58.8
|
1.0
|
C1B
|
A:CLA1012
|
3.1
|
58.8
|
1.0
|
C1D
|
A:CLA1012
|
3.1
|
58.8
|
1.0
|
C4A
|
A:CLA1012
|
3.1
|
58.8
|
1.0
|
C4C
|
A:CLA1012
|
3.2
|
58.8
|
1.0
|
C1A
|
A:CLA1012
|
3.2
|
58.8
|
1.0
|
CHC
|
A:CLA1012
|
3.3
|
58.8
|
1.0
|
CBB
|
A:CLA1013
|
3.3
|
57.7
|
1.0
|
CHB
|
A:CLA1012
|
3.4
|
58.8
|
1.0
|
CHA
|
A:CLA1012
|
3.4
|
58.8
|
1.0
|
CHD
|
A:CLA1012
|
3.5
|
58.8
|
1.0
|
C3D
|
A:CLA1012
|
4.1
|
58.8
|
1.0
|
C3B
|
A:CLA1012
|
4.2
|
58.8
|
1.0
|
C2D
|
A:CLA1012
|
4.2
|
58.8
|
1.0
|
C2B
|
A:CLA1012
|
4.3
|
58.8
|
1.0
|
CAB
|
A:CLA1013
|
4.3
|
57.7
|
1.0
|
C2C
|
A:CLA1012
|
4.4
|
58.8
|
1.0
|
C3C
|
A:CLA1012
|
4.4
|
58.8
|
1.0
|
C3A
|
A:CLA1012
|
4.4
|
58.8
|
1.0
|
C2A
|
A:CLA1012
|
4.5
|
58.8
|
1.0
|
OD1
|
B:ASN585
|
4.7
|
52.5
|
1.0
|
CB
|
A:ALA687
|
4.7
|
52.7
|
1.0
|
CBD
|
A:CLA1012
|
4.9
|
58.8
|
1.0
|
|
Magnesium binding site 3 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 3 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1013
b:57.7
occ:1.00
|
MG
|
A:CLA1013
|
0.0
|
57.7
|
1.0
|
ND
|
A:CLA1013
|
2.0
|
57.7
|
1.0
|
NB
|
A:CLA1013
|
2.0
|
57.7
|
1.0
|
NC
|
A:CLA1013
|
2.1
|
57.7
|
1.0
|
NA
|
A:CLA1013
|
2.2
|
57.7
|
1.0
|
C4D
|
A:CLA1013
|
2.9
|
57.7
|
1.0
|
C4B
|
A:CLA1013
|
3.0
|
57.7
|
1.0
|
C1C
|
A:CLA1013
|
3.0
|
57.7
|
1.0
|
C1B
|
A:CLA1013
|
3.0
|
57.7
|
1.0
|
C1D
|
A:CLA1013
|
3.1
|
57.7
|
1.0
|
C4A
|
A:CLA1013
|
3.1
|
57.7
|
1.0
|
C4C
|
A:CLA1013
|
3.1
|
57.7
|
1.0
|
C1A
|
A:CLA1013
|
3.2
|
57.7
|
1.0
|
CHC
|
A:CLA1013
|
3.3
|
57.7
|
1.0
|
CHB
|
A:CLA1013
|
3.4
|
57.7
|
1.0
|
CHA
|
A:CLA1013
|
3.4
|
57.7
|
1.0
|
CHD
|
A:CLA1013
|
3.5
|
57.7
|
1.0
|
CE
|
A:MET691
|
3.6
|
54.5
|
1.0
|
NE1
|
B:TRP582
|
3.7
|
51.2
|
1.0
|
CZ2
|
B:TRP582
|
3.8
|
51.2
|
1.0
|
SD
|
A:MET691
|
4.0
|
54.5
|
1.0
|
CG
|
A:MET691
|
4.1
|
54.5
|
1.0
|
CE2
|
B:TRP582
|
4.1
|
51.2
|
1.0
|
C3D
|
A:CLA1013
|
4.1
|
57.7
|
1.0
|
C3B
|
A:CLA1013
|
4.2
|
57.7
|
1.0
|
C2B
|
A:CLA1013
|
4.3
|
57.7
|
1.0
|
C2D
|
A:CLA1013
|
4.3
|
57.7
|
1.0
|
C2C
|
A:CLA1013
|
4.3
|
57.7
|
1.0
|
C3C
|
A:CLA1013
|
4.4
|
57.7
|
1.0
|
C3A
|
A:CLA1013
|
4.4
|
57.7
|
1.0
|
C2A
|
A:CLA1013
|
4.5
|
57.7
|
1.0
|
CB
|
A:MET691
|
4.5
|
54.5
|
1.0
|
CBD
|
A:CLA1013
|
4.9
|
57.7
|
1.0
|
CD1
|
B:TRP582
|
4.9
|
51.2
|
1.0
|
CH2
|
B:TRP582
|
5.0
|
51.2
|
1.0
|
|
Magnesium binding site 4 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 4 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1101
b:74.0
occ:1.00
|
MG
|
A:CLA1101
|
0.0
|
74.0
|
1.0
|
ND
|
A:CLA1101
|
2.0
|
74.0
|
1.0
|
NB
|
A:CLA1101
|
2.0
|
74.0
|
1.0
|
NC
|
A:CLA1101
|
2.1
|
74.0
|
1.0
|
NA
|
A:CLA1101
|
2.2
|
74.0
|
1.0
|
NE2
|
A:HIS58
|
2.8
|
68.7
|
1.0
|
C4D
|
A:CLA1101
|
2.9
|
74.0
|
1.0
|
C4B
|
A:CLA1101
|
3.0
|
74.0
|
1.0
|
C1C
|
A:CLA1101
|
3.0
|
74.0
|
1.0
|
C1B
|
A:CLA1101
|
3.1
|
74.0
|
1.0
|
C1D
|
A:CLA1101
|
3.1
|
74.0
|
1.0
|
C4A
|
A:CLA1101
|
3.2
|
74.0
|
1.0
|
C1A
|
A:CLA1101
|
3.2
|
74.0
|
1.0
|
C4C
|
A:CLA1101
|
3.2
|
74.0
|
1.0
|
CHC
|
A:CLA1101
|
3.3
|
74.0
|
1.0
|
CHB
|
A:CLA1101
|
3.4
|
74.0
|
1.0
|
CHA
|
A:CLA1101
|
3.5
|
74.0
|
1.0
|
CHD
|
A:CLA1101
|
3.6
|
74.0
|
1.0
|
CE1
|
A:HIS58
|
3.6
|
68.7
|
1.0
|
CG
|
J:PRO12
|
3.7
|
75.7
|
1.0
|
CB
|
J:PRO12
|
3.7
|
75.7
|
1.0
|
CD2
|
A:HIS58
|
3.7
|
68.7
|
1.0
|
C3D
|
A:CLA1101
|
4.2
|
74.0
|
1.0
|
C3B
|
A:CLA1101
|
4.2
|
74.0
|
1.0
|
C2B
|
A:CLA1101
|
4.3
|
74.0
|
1.0
|
C2D
|
A:CLA1101
|
4.3
|
74.0
|
1.0
|
C2C
|
A:CLA1101
|
4.4
|
74.0
|
1.0
|
C3C
|
A:CLA1101
|
4.4
|
74.0
|
1.0
|
C3A
|
A:CLA1101
|
4.5
|
74.0
|
1.0
|
C2A
|
A:CLA1101
|
4.5
|
74.0
|
1.0
|
CD
|
J:PRO12
|
4.6
|
75.7
|
1.0
|
C22
|
J:LUT4013
|
4.7
|
81.4
|
1.0
|
ND1
|
A:HIS58
|
4.8
|
68.7
|
1.0
|
CG
|
A:HIS58
|
4.9
|
68.7
|
1.0
|
O23
|
J:LUT4013
|
4.9
|
81.4
|
1.0
|
CBD
|
A:CLA1101
|
4.9
|
74.0
|
1.0
|
|
Magnesium binding site 5 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 5 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1102
b:75.7
occ:1.00
|
MG
|
A:CLA1102
|
0.0
|
75.7
|
1.0
|
ND
|
A:CLA1102
|
2.0
|
75.7
|
1.0
|
NB
|
A:CLA1102
|
2.0
|
75.7
|
1.0
|
NC
|
A:CLA1102
|
2.1
|
75.7
|
1.0
|
NA
|
A:CLA1102
|
2.2
|
75.7
|
1.0
|
NE2
|
A:HIS62
|
2.9
|
68.5
|
1.0
|
C4D
|
A:CLA1102
|
2.9
|
75.7
|
1.0
|
C4B
|
A:CLA1102
|
3.0
|
75.7
|
1.0
|
C1C
|
A:CLA1102
|
3.0
|
75.7
|
1.0
|
C1B
|
A:CLA1102
|
3.1
|
75.7
|
1.0
|
C1D
|
A:CLA1102
|
3.1
|
75.7
|
1.0
|
C4A
|
A:CLA1102
|
3.1
|
75.7
|
1.0
|
C4C
|
A:CLA1102
|
3.1
|
75.7
|
1.0
|
C1A
|
A:CLA1102
|
3.2
|
75.7
|
1.0
|
CHC
|
A:CLA1102
|
3.3
|
75.7
|
1.0
|
CHB
|
A:CLA1102
|
3.4
|
75.7
|
1.0
|
CHA
|
A:CLA1102
|
3.4
|
75.7
|
1.0
|
CHD
|
A:CLA1102
|
3.5
|
75.7
|
1.0
|
CE1
|
A:HIS62
|
3.5
|
68.5
|
1.0
|
C7
|
A:CLA1109
|
3.9
|
79.3
|
1.0
|
CD2
|
A:HIS62
|
4.0
|
68.5
|
1.0
|
C3D
|
A:CLA1102
|
4.1
|
75.7
|
1.0
|
C3B
|
A:CLA1102
|
4.2
|
75.7
|
1.0
|
C2B
|
A:CLA1102
|
4.3
|
75.7
|
1.0
|
C2D
|
A:CLA1102
|
4.3
|
75.7
|
1.0
|
C2C
|
A:CLA1102
|
4.3
|
75.7
|
1.0
|
C3C
|
A:CLA1102
|
4.4
|
75.7
|
1.0
|
C3A
|
A:CLA1102
|
4.4
|
75.7
|
1.0
|
C2A
|
A:CLA1102
|
4.5
|
75.7
|
1.0
|
C10
|
A:CLA1109
|
4.5
|
79.3
|
1.0
|
C6
|
A:CLA1109
|
4.6
|
79.3
|
1.0
|
CAB
|
A:CLA1101
|
4.7
|
74.0
|
1.0
|
C8
|
A:CLA1109
|
4.7
|
79.3
|
1.0
|
ND1
|
A:HIS62
|
4.8
|
68.5
|
1.0
|
CBB
|
A:CLA1101
|
4.8
|
74.0
|
1.0
|
C5
|
A:CLA1109
|
4.9
|
79.3
|
1.0
|
CBD
|
A:CLA1102
|
4.9
|
75.7
|
1.0
|
CBB
|
A:CLA1103
|
5.0
|
62.4
|
1.0
|
|
Magnesium binding site 6 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 6 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1103
b:62.4
occ:1.00
|
MG
|
A:CLA1103
|
0.0
|
62.4
|
1.0
|
ND
|
A:CLA1103
|
2.0
|
62.4
|
1.0
|
NB
|
A:CLA1103
|
2.0
|
62.4
|
1.0
|
NC
|
A:CLA1103
|
2.1
|
62.4
|
1.0
|
NA
|
A:CLA1103
|
2.2
|
62.4
|
1.0
|
C4D
|
A:CLA1103
|
2.9
|
62.4
|
1.0
|
C4B
|
A:CLA1103
|
3.0
|
62.4
|
1.0
|
NE2
|
A:HIS82
|
3.0
|
61.7
|
1.0
|
C1C
|
A:CLA1103
|
3.0
|
62.4
|
1.0
|
C1B
|
A:CLA1103
|
3.1
|
62.4
|
1.0
|
CMB
|
A:CLA1128
|
3.1
|
61.0
|
1.0
|
C1D
|
A:CLA1103
|
3.1
|
62.4
|
1.0
|
C4A
|
A:CLA1103
|
3.1
|
62.4
|
1.0
|
C1A
|
A:CLA1103
|
3.1
|
62.4
|
1.0
|
C4C
|
A:CLA1103
|
3.2
|
62.4
|
1.0
|
CHC
|
A:CLA1103
|
3.3
|
62.4
|
1.0
|
CD2
|
A:HIS82
|
3.4
|
61.7
|
1.0
|
CHA
|
A:CLA1103
|
3.4
|
62.4
|
1.0
|
CHB
|
A:CLA1103
|
3.4
|
62.4
|
1.0
|
CHD
|
A:CLA1103
|
3.5
|
62.4
|
1.0
|
CE1
|
A:HIS82
|
4.1
|
61.7
|
1.0
|
C3D
|
A:CLA1103
|
4.1
|
62.4
|
1.0
|
C3B
|
A:CLA1103
|
4.2
|
62.4
|
1.0
|
C2B
|
A:CLA1103
|
4.3
|
62.4
|
1.0
|
C2D
|
A:CLA1103
|
4.3
|
62.4
|
1.0
|
C2C
|
A:CLA1103
|
4.3
|
62.4
|
1.0
|
C3C
|
A:CLA1103
|
4.4
|
62.4
|
1.0
|
CBB
|
A:CLA1128
|
4.4
|
61.0
|
1.0
|
C3A
|
A:CLA1103
|
4.5
|
62.4
|
1.0
|
C2A
|
A:CLA1103
|
4.5
|
62.4
|
1.0
|
C2B
|
A:CLA1128
|
4.5
|
61.0
|
1.0
|
CG
|
A:HIS82
|
4.6
|
61.7
|
1.0
|
CBD
|
A:CLA1103
|
4.9
|
62.4
|
1.0
|
ND1
|
A:HIS82
|
4.9
|
61.7
|
1.0
|
|
Magnesium binding site 7 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 7 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1104
b:59.7
occ:1.00
|
MG
|
A:CLA1104
|
0.0
|
59.7
|
1.0
|
ND
|
A:CLA1104
|
2.0
|
59.7
|
1.0
|
NB
|
A:CLA1104
|
2.0
|
59.7
|
1.0
|
NC
|
A:CLA1104
|
2.1
|
59.7
|
1.0
|
NA
|
A:CLA1104
|
2.2
|
59.7
|
1.0
|
C4D
|
A:CLA1104
|
2.9
|
59.7
|
1.0
|
C4B
|
A:CLA1104
|
3.0
|
59.7
|
1.0
|
C1C
|
A:CLA1104
|
3.0
|
59.7
|
1.0
|
C1B
|
A:CLA1104
|
3.1
|
59.7
|
1.0
|
C1D
|
A:CLA1104
|
3.1
|
59.7
|
1.0
|
C4A
|
A:CLA1104
|
3.1
|
59.7
|
1.0
|
C4C
|
A:CLA1104
|
3.1
|
59.7
|
1.0
|
C1A
|
A:CLA1104
|
3.2
|
59.7
|
1.0
|
OE1
|
A:GLN85
|
3.3
|
58.7
|
1.0
|
CHC
|
A:CLA1104
|
3.3
|
59.7
|
1.0
|
CHB
|
A:CLA1104
|
3.4
|
59.7
|
1.0
|
CHA
|
A:CLA1104
|
3.4
|
59.7
|
1.0
|
CHD
|
A:CLA1104
|
3.5
|
59.7
|
1.0
|
C17
|
A:CLA1104
|
3.8
|
59.7
|
1.0
|
CD
|
A:GLN85
|
4.0
|
58.7
|
1.0
|
C16
|
A:CLA1104
|
4.1
|
59.7
|
1.0
|
NE2
|
A:GLN85
|
4.1
|
58.7
|
1.0
|
C3D
|
A:CLA1104
|
4.1
|
59.7
|
1.0
|
C15
|
A:CLA1104
|
4.2
|
59.7
|
1.0
|
C3B
|
A:CLA1104
|
4.2
|
59.7
|
1.0
|
C2B
|
A:CLA1104
|
4.3
|
59.7
|
1.0
|
C2D
|
A:CLA1104
|
4.3
|
59.7
|
1.0
|
C2C
|
A:CLA1104
|
4.3
|
59.7
|
1.0
|
C3C
|
A:CLA1104
|
4.4
|
59.7
|
1.0
|
C3A
|
A:CLA1104
|
4.5
|
59.7
|
1.0
|
C2A
|
A:CLA1104
|
4.5
|
59.7
|
1.0
|
C18
|
A:CLA1104
|
4.5
|
59.7
|
1.0
|
CMA
|
A:CLA1103
|
4.8
|
62.4
|
1.0
|
C13
|
A:CLA1104
|
4.9
|
59.7
|
1.0
|
CBD
|
A:CLA1104
|
4.9
|
59.7
|
1.0
|
|
Magnesium binding site 8 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 8 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1105
b:74.1
occ:1.00
|
MG
|
A:CLA1105
|
0.0
|
74.1
|
1.0
|
ND
|
A:CLA1105
|
2.0
|
74.1
|
1.0
|
NB
|
A:CLA1105
|
2.0
|
74.1
|
1.0
|
NC
|
A:CLA1105
|
2.1
|
74.1
|
1.0
|
NA
|
A:CLA1105
|
2.2
|
74.1
|
1.0
|
NE2
|
A:HIS99
|
2.5
|
67.5
|
1.0
|
C4D
|
A:CLA1105
|
2.9
|
74.1
|
1.0
|
C4B
|
A:CLA1105
|
3.0
|
74.1
|
1.0
|
C1C
|
A:CLA1105
|
3.0
|
74.1
|
1.0
|
C1B
|
A:CLA1105
|
3.1
|
74.1
|
1.0
|
C1D
|
A:CLA1105
|
3.1
|
74.1
|
1.0
|
C1A
|
A:CLA1105
|
3.1
|
74.1
|
1.0
|
C4A
|
A:CLA1105
|
3.2
|
74.1
|
1.0
|
C4C
|
A:CLA1105
|
3.2
|
74.1
|
1.0
|
CHC
|
A:CLA1105
|
3.3
|
74.1
|
1.0
|
CE1
|
A:HIS99
|
3.3
|
67.5
|
1.0
|
CHA
|
A:CLA1105
|
3.4
|
74.1
|
1.0
|
CHB
|
A:CLA1105
|
3.5
|
74.1
|
1.0
|
CHD
|
A:CLA1105
|
3.5
|
74.1
|
1.0
|
CD2
|
A:HIS99
|
3.5
|
67.5
|
1.0
|
C10
|
A:LMT5004
|
3.9
|
86.7
|
1.0
|
C3D
|
A:CLA1105
|
4.1
|
74.1
|
1.0
|
C3B
|
A:CLA1105
|
4.2
|
74.1
|
1.0
|
C11
|
A:LMT5004
|
4.2
|
86.7
|
1.0
|
C2D
|
A:CLA1105
|
4.3
|
74.1
|
1.0
|
C9
|
A:LMT5004
|
4.3
|
86.7
|
1.0
|
C2B
|
A:CLA1105
|
4.3
|
74.1
|
1.0
|
C8
|
A:LMT5004
|
4.3
|
86.7
|
1.0
|
C2C
|
A:CLA1105
|
4.3
|
74.1
|
1.0
|
C3C
|
A:CLA1105
|
4.4
|
74.1
|
1.0
|
ND1
|
A:HIS99
|
4.5
|
67.5
|
1.0
|
C3A
|
A:CLA1105
|
4.5
|
74.1
|
1.0
|
C2A
|
A:CLA1105
|
4.5
|
74.1
|
1.0
|
CG
|
A:HIS99
|
4.6
|
67.5
|
1.0
|
CBD
|
A:CLA1105
|
4.9
|
74.1
|
1.0
|
|
Magnesium binding site 9 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 9 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1106
b:65.2
occ:1.00
|
MG
|
A:CLA1106
|
0.0
|
65.2
|
1.0
|
ND
|
A:CLA1106
|
2.0
|
65.2
|
1.0
|
NB
|
A:CLA1106
|
2.0
|
65.2
|
1.0
|
NC
|
A:CLA1106
|
2.1
|
65.2
|
1.0
|
NA
|
A:CLA1106
|
2.2
|
65.2
|
1.0
|
OE1
|
A:GLN121
|
2.6
|
64.6
|
1.0
|
C4D
|
A:CLA1106
|
2.9
|
65.2
|
1.0
|
C4B
|
A:CLA1106
|
3.0
|
65.2
|
1.0
|
C1C
|
A:CLA1106
|
3.0
|
65.2
|
1.0
|
C1B
|
A:CLA1106
|
3.1
|
65.2
|
1.0
|
C1D
|
A:CLA1106
|
3.1
|
65.2
|
1.0
|
C4A
|
A:CLA1106
|
3.1
|
65.2
|
1.0
|
C1A
|
A:CLA1106
|
3.1
|
65.2
|
1.0
|
C4C
|
A:CLA1106
|
3.1
|
65.2
|
1.0
|
CHC
|
A:CLA1106
|
3.3
|
65.2
|
1.0
|
CHB
|
A:CLA1106
|
3.4
|
65.2
|
1.0
|
CHA
|
A:CLA1106
|
3.4
|
65.2
|
1.0
|
CD
|
A:GLN121
|
3.4
|
64.6
|
1.0
|
CHD
|
A:CLA1106
|
3.5
|
65.2
|
1.0
|
NE2
|
A:GLN121
|
3.6
|
64.6
|
1.0
|
C2
|
A:CLA1126
|
3.9
|
61.4
|
1.0
|
C6
|
A:CLA1126
|
4.1
|
61.4
|
1.0
|
C3D
|
A:CLA1106
|
4.1
|
65.2
|
1.0
|
C3B
|
A:CLA1106
|
4.2
|
65.2
|
1.0
|
C2B
|
A:CLA1106
|
4.3
|
65.2
|
1.0
|
C2D
|
A:CLA1106
|
4.3
|
65.2
|
1.0
|
C5
|
A:CLA1126
|
4.3
|
61.4
|
1.0
|
C2C
|
A:CLA1106
|
4.3
|
65.2
|
1.0
|
C3C
|
A:CLA1106
|
4.4
|
65.2
|
1.0
|
C3A
|
A:CLA1106
|
4.5
|
65.2
|
1.0
|
C2A
|
A:CLA1106
|
4.5
|
65.2
|
1.0
|
C3
|
A:CLA1126
|
4.5
|
61.4
|
1.0
|
O1A
|
A:CLA1106
|
4.8
|
65.2
|
1.0
|
CG
|
A:GLN121
|
4.9
|
64.6
|
1.0
|
CBD
|
A:CLA1106
|
4.9
|
65.2
|
1.0
|
C1
|
A:CLA1126
|
4.9
|
61.4
|
1.0
|
|
Magnesium binding site 10 out
of 157 in 6yez
Go back to
Magnesium Binding Sites List in 6yez
Magnesium binding site 10 out
of 157 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1107
b:70.3
occ:1.00
|
MG
|
A:CLA1107
|
0.0
|
70.3
|
1.0
|
ND
|
A:CLA1107
|
2.0
|
70.3
|
1.0
|
NB
|
A:CLA1107
|
2.0
|
70.3
|
1.0
|
NC
|
A:CLA1107
|
2.1
|
70.3
|
1.0
|
NA
|
A:CLA1107
|
2.2
|
70.3
|
1.0
|
OE1
|
A:GLN129
|
2.4
|
69.7
|
1.0
|
C4D
|
A:CLA1107
|
2.9
|
70.3
|
1.0
|
C4B
|
A:CLA1107
|
3.0
|
70.3
|
1.0
|
C1C
|
A:CLA1107
|
3.0
|
70.3
|
1.0
|
C1B
|
A:CLA1107
|
3.1
|
70.3
|
1.0
|
C1D
|
A:CLA1107
|
3.1
|
70.3
|
1.0
|
C4A
|
A:CLA1107
|
3.1
|
70.3
|
1.0
|
C4C
|
A:CLA1107
|
3.2
|
70.3
|
1.0
|
C1A
|
A:CLA1107
|
3.2
|
70.3
|
1.0
|
CHC
|
A:CLA1107
|
3.3
|
70.3
|
1.0
|
CD
|
A:GLN129
|
3.4
|
69.7
|
1.0
|
CHB
|
A:CLA1107
|
3.4
|
70.3
|
1.0
|
CHA
|
A:CLA1107
|
3.4
|
70.3
|
1.0
|
CHD
|
A:CLA1107
|
3.5
|
70.3
|
1.0
|
C17
|
A:CLA1126
|
3.9
|
61.4
|
1.0
|
C16
|
A:CLA1126
|
4.0
|
61.4
|
1.0
|
NE2
|
A:GLN129
|
4.0
|
69.7
|
1.0
|
C3D
|
A:CLA1107
|
4.1
|
70.3
|
1.0
|
C3B
|
A:CLA1107
|
4.2
|
70.3
|
1.0
|
C2B
|
A:CLA1107
|
4.3
|
70.3
|
1.0
|
C2D
|
A:CLA1107
|
4.3
|
70.3
|
1.0
|
C2C
|
A:CLA1107
|
4.3
|
70.3
|
1.0
|
C3C
|
A:CLA1107
|
4.4
|
70.3
|
1.0
|
CG
|
A:GLN129
|
4.5
|
69.7
|
1.0
|
C3A
|
A:CLA1107
|
4.5
|
70.3
|
1.0
|
C2A
|
A:CLA1107
|
4.5
|
70.3
|
1.0
|
CB
|
A:GLN129
|
4.5
|
69.7
|
1.0
|
C18
|
A:CLA1126
|
4.6
|
61.4
|
1.0
|
CBD
|
A:CLA1107
|
4.9
|
70.3
|
1.0
|
CG2
|
A:ILE126
|
4.9
|
73.0
|
1.0
|
|
Reference:
I.Caspy,
A.Borovikova-Sheinker,
D.Klaiman,
Y.Shkolnisky,
N.Nelson.
The Structure of A Triple Complex of Plant Photosystem I with Ferredoxin and Plastocyanin. Nat.Plants V. 6 1300 2020.
ISSN: ESSN 2055-0278
PubMed: 33020607
DOI: 10.1038/S41477-020-00779-9
Page generated: Wed Oct 2 00:19:05 2024
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