Magnesium in PDB 6ymw: Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex

All present enzymatic activity of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex:
2.7.7.6;

The binding sites of Magnesium atom in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex (pdb code 6ymw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex, PDB code: 6ymw:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:44.5 occ:1.00 O2A A:P5E1401 2.2 42.6 1.0 O3G A:P5E1401 2.2 42.6 1.0 OD2 A:ASP1189 2.2 30.4 1.0 O2B A:P5E1401 2.3 42.6 1.0 O A:GLY946 2.3 36.6 1.0 CG A:ASP1189 3.3 30.4 1.0 PG A:P5E1401 3.4 42.6 1.0 C A:GLY946 3.4 36.6 1.0 PB A:P5E1401 3.5 42.6 1.0 PA A:P5E1401 3.5 42.6 1.0 O1G A:P5E1401 3.8 42.6 1.0 N A:GLY946 3.9 36.6 1.0 O3B A:P5E1401 3.9 42.6 1.0 O3A A:P5E1401 3.9 42.6 1.0 C5' A:P5E1401 4.0 42.6 1.0 CA A:GLY946 4.0 36.6 1.0 OD1 A:ASP1189 4.1 30.4 1.0 CB A:ASP1189 4.3 30.4 1.0 O5' A:P5E1401 4.3 42.6 1.0 O A:ASP1189 4.4 30.4 1.0 N A:THR947 4.5 37.1 1.0 O2G A:P5E1401 4.6 42.6 1.0 S1A A:P5E1401 4.6 42.6 1.0 O1B A:P5E1401 4.7 42.6 1.0 N A:CYS948 4.8 37.0 1.0 CA A:THR947 4.9 37.1 1.0 C A:ASP945 4.9 34.9 1.0

B.D.Wijngaert, S.Sultana, A.Singh, C.Dharia, H.Vanbuel, J.Shen, D.Vasilchuk, S.E.Martinez, E.Kandiah, S.S.Patel, K.Das. Cryo-Em Structures Reveal Transcription Initiation Steps By Yeast Mitochondrial Rna Polymerase Mol.Cell 2020.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2020.11.016