Magnesium in PDB 6ywp: Structure of Apo-Cuta

The structure of Structure of Apo-Cuta, PDB code: 6ywp was solved by D.Malik, K.Kobylecki, P.Krawczyk, J.Poznanski, A.Jakielaszek, A.Napiorkowska, A.Dziembowski, R.Tomecki, M.Nowotny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.66 / 2.25
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.960, 70.233, 145.337, 90.00, 103.18, 90.00
R / Rfree (%)	19.8 / 24.1

The binding sites of Magnesium atom in the Structure of Apo-Cuta (pdb code 6ywp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Apo-Cuta, PDB code: 6ywp:

Magnesium binding site 1 out of 1 in the Structure of Apo-Cuta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Apo-Cuta within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:58.8 occ:1.00 O A:HOH980 2.1 48.8 1.0 O A:ARG492 3.0 46.5 1.0 C A:GLY493 3.7 39.2 1.0 N A:PHE494 3.9 36.7 1.0 O A:GLY493 4.0 39.1 1.0 C A:ARG492 4.0 45.7 1.0 CA A:GLY493 4.1 38.0 1.0 O A:LYS490 4.1 50.1 1.0 CA A:PHE494 4.3 39.3 1.0 O A:HOH823 4.3 38.7 1.0 O A:LEU491 4.3 40.9 1.0 N A:GLY493 4.5 43.0 1.0 C A:LEU491 4.7 45.3 1.0 CB A:PHE494 5.0 37.5 1.0

D.Malik, K.Kobylecki, P.Krawczyk, J.Poznanski, A.Jakielaszek, A.Napiorkowska, A.Dziembowski, R.Tomecki, M.Nowotny. Structure and Mechanism of Cuta, Rna Nucleotidyl Transferase with An Unusual Preference For Cytosine. Nucleic Acids Res. V. 48 9387 2020.
ISSN: ESSN 1362-4962
PubMed: 32785623
DOI: 10.1093/NAR/GKAA647