Atomistry » Magnesium » PDB 6ykt-6yxr » 6yxh
Atomistry »
  Magnesium »
    PDB 6ykt-6yxr »
      6yxh »

Magnesium in PDB 6yxh: Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect

Enzymatic activity of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect

All present enzymatic activity of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect:
3.5.1.23;

Protein crystallography data

The structure of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxh was solved by R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.18 / 2.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.47, 69.97, 259.49, 90, 90, 90
R / Rfree (%) 23.2 / 28

Other elements in 6yxh:

The structure of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect also contains other interesting chemical elements:

Sodium (Na) 2 atoms
Calcium (Ca) 1 atom
Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect (pdb code 6yxh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6yxh

Go back to Magnesium Binding Sites List in 6yxh
Magnesium binding site 1 out of 2 in the Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg411

b:73.4
occ:0.50
 O3 A:SO4406 3.5 139.1 1.0
S A:SO4406 4.8 139.1 1.0

Magnesium binding site 2 out of 2 in 6yxh

Go back to Magnesium Binding Sites List in 6yxh
Magnesium binding site 2 out of 2 in the Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg412

b:70.1
occ:1.00
 O1 A:SO4402 2.6 97.6 1.0
N A:ASN115 2.8 59.9 1.0
OE1 A:GLU60 2.8 62.3 1.0
CA A:ASN115 3.6 61.1 1.0
CG A:GLU60 3.6 61.6 1.0
CD A:GLU60 3.6 62.9 1.0
CA A:LYS114 3.7 60.5 1.0
C A:LYS114 3.7 60.3 1.0
S A:SO4402 4.0 97.3 1.0
CB A:LYS114 4.1 61.4 1.0
CG A:ASN115 4.2 62.4 1.0
OD1 A:ASN115 4.2 62.8 1.0
O A:HOH516 4.3 67.8 1.0
O2 A:SO4402 4.3 97.2 1.0
NH2 A:ARG239 4.3 55.3 1.0
NH1 A:ARG62 4.4 74.1 1.0
ND2 A:ASN115 4.5 62.7 1.0
CG A:LYS114 4.5 63.8 1.0
CB A:ASN115 4.5 61.3 1.0
N A:SER116 4.6 64.4 1.0
C A:ASN115 4.6 63.0 1.0
O3 A:SO4402 4.7 97.4 1.0
CB A:GLU60 4.7 62.0 1.0
O A:ILE113 4.8 62.7 1.0
OE2 A:GLU60 4.8 66.5 1.0
CE A:LYS114 4.9 76.8 1.0
O A:LYS114 4.9 60.9 1.0
O4 A:SO4402 4.9 97.0 1.0
N A:LYS114 5.0 60.7 1.0

Reference:

R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez. Rapid, Automated Serial Crystallography Analysis of Membrane Proteins Through Crystaldirect To Be Published.
Page generated: Wed Oct 2 01:13:53 2024

Last articles

Zn in 3HKQ
Zn in 3HKA
Zn in 3HKO
Zn in 3HKN
Zn in 3HK8
Zn in 3HK5
Zn in 3HJT
Zn in 3HJW
Zn in 3HGZ
Zn in 3HI2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy