Magnesium in PDB 6yxu: Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged

Enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged

All present enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged:
2.7.7.6; 3.6.4.12;

Other elements in 6yxu:

The structure of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged (pdb code 6yxu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged, PDB code: 6yxu:

Magnesium binding site 1 out of 1 in 6yxu

Go back to Magnesium Binding Sites List in 6yxu
Magnesium binding site 1 out of 1 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State I, Primary Channel Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2003

b:13.0
occ:1.00
OD1 D:ASP539 1.9 19.3 1.0
OD1 D:ASP535 2.1 18.5 1.0
OD1 D:ASP537 2.4 18.0 1.0
CG D:ASP539 2.5 19.3 1.0
OD2 D:ASP539 2.6 19.3 1.0
CG D:ASP535 2.9 18.5 1.0
OD2 D:ASP535 3.0 18.5 1.0
CG D:ASP537 3.2 18.0 1.0
OD2 D:ASP537 3.3 18.0 1.0
CB D:ASP539 4.0 19.3 1.0
O D:ASP535 4.1 18.5 1.0
CB D:ASP535 4.4 18.5 1.0
CA D:ASP539 4.6 19.3 1.0
N D:ASP539 4.6 19.3 1.0
NH2 D:ARG500 4.7 19.0 1.0
CB D:ASP537 4.7 18.0 1.0
C D:ASP535 4.7 18.5 1.0
N D:ASP535 4.8 18.5 1.0
CA D:ASP535 4.9 18.5 1.0
C D:ASP537 5.0 18.0 1.0

Reference:

T.Kouba, T.Koval, J.Dohnalek, L.Krasny. Held, A Helicase-Like Protein From Gram-Positive Bacteria in Complex with Rna Polymerase To Be Published.
Page generated: Tue Dec 15 02:45:08 2020

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