Magnesium in PDB 6yy0: Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Enzymatic activity of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
All present enzymatic activity of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1:
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
(pdb code 6yy0). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1, PDB code: 6yy0:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 6yy0
Go back to
Magnesium Binding Sites List in 6yy0
Magnesium binding site 1 out
of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:24.2
occ:1.00
|
O
|
A:HOH702
|
2.2
|
27.4
|
1.0
|
O2B
|
A:ATP600
|
2.2
|
34.6
|
1.0
|
OG1
|
A:THR176
|
2.2
|
22.9
|
1.0
|
O
|
A:HOH703
|
2.2
|
18.6
|
1.0
|
O
|
A:HOH701
|
2.2
|
27.4
|
1.0
|
O2G
|
A:ATP600
|
2.2
|
34.6
|
0.8
|
HB
|
A:THR176
|
2.9
|
22.9
|
1.0
|
CB
|
A:THR176
|
3.1
|
22.9
|
1.0
|
PG
|
A:ATP600
|
3.1
|
34.6
|
0.8
|
O3G
|
A:ATP600
|
3.4
|
34.6
|
0.8
|
PB
|
A:ATP600
|
3.4
|
34.6
|
1.0
|
O3B
|
A:ATP600
|
3.4
|
34.6
|
1.0
|
H
|
A:THR176
|
3.5
|
22.9
|
1.0
|
HG21
|
A:THR176
|
3.8
|
22.9
|
1.0
|
CG2
|
A:THR176
|
4.0
|
22.9
|
1.0
|
O1A
|
A:ATP600
|
4.1
|
34.6
|
1.0
|
N
|
A:THR176
|
4.1
|
22.9
|
1.0
|
CA
|
A:THR176
|
4.2
|
22.9
|
1.0
|
O1B
|
A:ATP600
|
4.4
|
34.6
|
1.0
|
O3A
|
A:ATP600
|
4.5
|
34.6
|
1.0
|
OD2
|
A:ASP269
|
4.5
|
20.9
|
1.0
|
O1G
|
A:ATP600
|
4.5
|
34.6
|
0.8
|
HE2
|
A:LYS175
|
4.6
|
22.5
|
1.0
|
HA
|
A:THR176
|
4.6
|
22.9
|
1.0
|
PA
|
A:ATP600
|
4.6
|
34.6
|
1.0
|
HG22
|
A:THR176
|
4.6
|
22.9
|
1.0
|
HG23
|
A:THR176
|
4.6
|
22.9
|
1.0
|
HB2
|
A:LYS175
|
4.7
|
22.5
|
1.0
|
HE22
|
A:GLN208
|
4.7
|
22.6
|
1.0
|
O2A
|
A:ATP600
|
4.8
|
34.6
|
1.0
|
OD1
|
A:ASP269
|
5.0
|
20.9
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 6yy0
Go back to
Magnesium Binding Sites List in 6yy0
Magnesium binding site 2 out
of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:31.0
occ:1.00
|
O2B
|
B:ATP600
|
2.2
|
28.5
|
1.0
|
O
|
B:HOH702
|
2.2
|
31.5
|
1.0
|
O
|
B:HOH701
|
2.2
|
31.6
|
1.0
|
O2G
|
B:ATP600
|
2.2
|
28.5
|
1.0
|
OG1
|
B:THR176
|
2.2
|
25.6
|
1.0
|
O
|
B:HOH703
|
2.2
|
20.4
|
1.0
|
HB
|
B:THR176
|
2.9
|
25.6
|
1.0
|
CB
|
B:THR176
|
3.1
|
25.6
|
1.0
|
PB
|
B:ATP600
|
3.3
|
28.5
|
1.0
|
PG
|
B:ATP600
|
3.4
|
28.5
|
1.0
|
H
|
B:THR176
|
3.5
|
25.6
|
1.0
|
O3B
|
B:ATP600
|
3.6
|
28.5
|
1.0
|
HG21
|
B:THR176
|
3.8
|
25.6
|
1.0
|
O2A
|
B:ATP600
|
4.0
|
28.5
|
1.0
|
CG2
|
B:THR176
|
4.1
|
25.6
|
1.0
|
O1G
|
B:ATP600
|
4.1
|
28.5
|
1.0
|
O1B
|
B:ATP600
|
4.1
|
28.5
|
1.0
|
N
|
B:THR176
|
4.2
|
25.6
|
1.0
|
CA
|
B:THR176
|
4.2
|
25.6
|
1.0
|
OD1
|
B:ASP269
|
4.2
|
21.4
|
1.0
|
OD2
|
B:ASP269
|
4.4
|
21.4
|
1.0
|
HA
|
B:THR176
|
4.5
|
25.6
|
1.0
|
O3A
|
B:ATP600
|
4.6
|
28.5
|
1.0
|
O3G
|
B:ATP600
|
4.6
|
28.5
|
1.0
|
HG22
|
B:THR176
|
4.7
|
25.6
|
1.0
|
HG23
|
B:THR176
|
4.7
|
25.6
|
1.0
|
HG21
|
B:THR212
|
4.7
|
27.1
|
1.0
|
PA
|
B:ATP600
|
4.7
|
28.5
|
1.0
|
HB2
|
B:LYS175
|
4.8
|
23.8
|
1.0
|
CG
|
B:ASP269
|
4.8
|
21.4
|
1.0
|
OE1
|
B:GLN208
|
4.8
|
24.3
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 6yy0
Go back to
Magnesium Binding Sites List in 6yy0
Magnesium binding site 3 out
of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:20.8
occ:1.00
|
OG1
|
C:THR176
|
2.2
|
21.3
|
1.0
|
O
|
C:HOH702
|
2.2
|
30.2
|
1.0
|
O
|
C:HOH703
|
2.2
|
16.3
|
1.0
|
O2B
|
C:ATP600
|
2.2
|
25.3
|
1.0
|
O
|
C:HOH701
|
2.2
|
27.2
|
1.0
|
O2G
|
C:ATP600
|
2.2
|
25.3
|
0.8
|
HB
|
C:THR176
|
2.9
|
21.3
|
1.0
|
CB
|
C:THR176
|
3.1
|
21.3
|
1.0
|
PG
|
C:ATP600
|
3.2
|
25.3
|
0.8
|
PB
|
C:ATP600
|
3.4
|
25.3
|
1.0
|
O3B
|
C:ATP600
|
3.4
|
25.3
|
1.0
|
H
|
C:THR176
|
3.5
|
21.3
|
1.0
|
O3G
|
C:ATP600
|
3.6
|
25.3
|
0.8
|
O2A
|
C:ATP600
|
3.6
|
25.3
|
1.0
|
HG21
|
C:THR176
|
3.7
|
21.3
|
1.0
|
CG2
|
C:THR176
|
4.0
|
21.3
|
1.0
|
OE1
|
C:GLN208
|
4.1
|
23.2
|
1.0
|
N
|
C:THR176
|
4.2
|
21.3
|
1.0
|
CA
|
C:THR176
|
4.2
|
21.3
|
1.0
|
O3A
|
C:ATP600
|
4.4
|
25.3
|
1.0
|
O1B
|
C:ATP600
|
4.4
|
25.3
|
1.0
|
PA
|
C:ATP600
|
4.5
|
25.3
|
1.0
|
OD1
|
C:ASP269
|
4.5
|
19.2
|
1.0
|
O1G
|
C:ATP600
|
4.6
|
25.3
|
0.8
|
HG22
|
C:THR176
|
4.6
|
21.3
|
1.0
|
HA
|
C:THR176
|
4.6
|
21.3
|
1.0
|
HG23
|
C:THR176
|
4.6
|
21.3
|
1.0
|
OD2
|
C:ASP269
|
4.6
|
19.2
|
1.0
|
HB2
|
C:LYS175
|
4.8
|
21.3
|
1.0
|
HG21
|
C:THR212
|
4.9
|
23.7
|
1.0
|
O1A
|
C:ATP600
|
4.9
|
25.3
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 6yy0
Go back to
Magnesium Binding Sites List in 6yy0
Magnesium binding site 4 out
of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:22.3
occ:1.00
|
O
|
D:HOH701
|
2.2
|
31.2
|
1.0
|
O2B
|
D:ADP600
|
2.2
|
26.6
|
1.0
|
O
|
D:HOH703
|
2.2
|
18.3
|
1.0
|
OG1
|
D:THR167
|
2.2
|
23.2
|
1.0
|
O
|
D:HOH702
|
2.2
|
24.7
|
1.0
|
O
|
D:HOH704
|
2.2
|
26.7
|
1.0
|
HH12
|
D:ARG193
|
2.9
|
23.7
|
1.0
|
CB
|
D:THR167
|
3.4
|
23.2
|
1.0
|
HB
|
D:THR167
|
3.5
|
23.2
|
1.0
|
OE1
|
D:GLU196
|
3.6
|
26.6
|
1.0
|
NH1
|
D:ARG193
|
3.6
|
23.7
|
1.0
|
HH11
|
D:ARG193
|
3.6
|
23.7
|
1.0
|
PB
|
D:ADP600
|
3.7
|
26.6
|
1.0
|
OE2
|
D:GLU196
|
3.7
|
26.6
|
1.0
|
H
|
D:THR167
|
3.8
|
23.2
|
1.0
|
CD
|
D:GLU196
|
4.1
|
26.6
|
1.0
|
HG21
|
D:THR167
|
4.1
|
23.2
|
1.0
|
OD2
|
D:ASP260
|
4.3
|
20.1
|
1.0
|
O3A
|
D:ADP600
|
4.3
|
26.6
|
1.0
|
CG2
|
D:THR167
|
4.3
|
23.2
|
1.0
|
N
|
D:THR167
|
4.4
|
23.2
|
1.0
|
HB2
|
D:LYS166
|
4.4
|
21.4
|
1.0
|
CA
|
D:THR167
|
4.4
|
23.2
|
1.0
|
O3B
|
D:ADP600
|
4.4
|
26.6
|
1.0
|
HE2
|
D:LYS166
|
4.4
|
21.4
|
1.0
|
O2A
|
D:ADP600
|
4.5
|
26.6
|
1.0
|
HD21
|
D:ASN261
|
4.5
|
19.6
|
1.0
|
HA
|
D:THR167
|
4.5
|
23.2
|
1.0
|
OD1
|
D:ASN261
|
4.6
|
19.6
|
1.0
|
O1B
|
D:ADP600
|
4.6
|
26.6
|
1.0
|
OD1
|
D:ASP260
|
4.6
|
20.1
|
1.0
|
HH22
|
D:ARG193
|
4.7
|
23.7
|
1.0
|
HB2
|
D:GLU192
|
4.8
|
25.8
|
1.0
|
CZ
|
D:ARG193
|
4.8
|
23.7
|
1.0
|
HG23
|
D:THR167
|
4.8
|
23.2
|
1.0
|
PA
|
D:ADP600
|
4.8
|
26.6
|
1.0
|
CG
|
D:ASP260
|
4.9
|
20.1
|
1.0
|
OE1
|
D:GLU192
|
4.9
|
25.8
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 6yy0
Go back to
Magnesium Binding Sites List in 6yy0
Magnesium binding site 5 out
of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:18.9
occ:1.00
|
OG1
|
F:THR167
|
2.2
|
22.6
|
1.0
|
O
|
F:HOH703
|
2.2
|
16.4
|
1.0
|
O
|
F:HOH704
|
2.2
|
17.7
|
1.0
|
O2B
|
F:ADP600
|
2.2
|
25.6
|
1.0
|
O
|
F:HOH701
|
2.2
|
23.9
|
1.0
|
O
|
F:HOH702
|
2.2
|
31.8
|
1.0
|
HB
|
F:THR167
|
2.9
|
22.6
|
1.0
|
HH12
|
F:ARG193
|
3.0
|
23.0
|
1.0
|
CB
|
F:THR167
|
3.1
|
22.6
|
1.0
|
PB
|
F:ADP600
|
3.3
|
25.6
|
1.0
|
O3B
|
F:ADP600
|
3.4
|
25.6
|
1.0
|
OE2
|
F:GLU196
|
3.5
|
24.8
|
1.0
|
HH11
|
F:ARG193
|
3.6
|
23.0
|
1.0
|
NH1
|
F:ARG193
|
3.6
|
23.0
|
1.0
|
H
|
F:THR167
|
3.7
|
22.6
|
1.0
|
OE1
|
F:GLU196
|
3.7
|
24.8
|
1.0
|
HG21
|
F:THR167
|
3.8
|
22.6
|
1.0
|
O3A
|
F:ADP600
|
4.0
|
25.6
|
1.0
|
CD
|
F:GLU196
|
4.0
|
24.8
|
1.0
|
O2A
|
F:ADP600
|
4.0
|
25.6
|
1.0
|
CG2
|
F:THR167
|
4.1
|
22.6
|
1.0
|
N
|
F:THR167
|
4.2
|
22.6
|
1.0
|
CA
|
F:THR167
|
4.2
|
22.6
|
1.0
|
OD2
|
F:ASP260
|
4.4
|
21.4
|
1.0
|
HB2
|
F:LYS166
|
4.4
|
19.9
|
1.0
|
HA
|
F:THR167
|
4.5
|
22.6
|
1.0
|
PA
|
F:ADP600
|
4.5
|
25.6
|
1.0
|
O1B
|
F:ADP600
|
4.6
|
25.6
|
1.0
|
HE2
|
F:LYS166
|
4.6
|
19.9
|
1.0
|
HG22
|
F:THR167
|
4.7
|
22.6
|
1.0
|
HG23
|
F:THR167
|
4.7
|
22.6
|
1.0
|
HB2
|
F:GLU192
|
4.7
|
23.5
|
1.0
|
OD1
|
F:ASP260
|
4.8
|
21.4
|
1.0
|
CZ
|
F:ARG193
|
4.8
|
23.0
|
1.0
|
OE2
|
F:GLU192
|
4.9
|
23.5
|
1.0
|
O1A
|
F:ADP600
|
4.9
|
25.6
|
1.0
|
HH22
|
F:ARG193
|
4.9
|
23.0
|
1.0
|
|
Reference:
T.E.Spikes,
M.G.Montgomery,
J.E.Walker.
Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117
Page generated: Wed Oct 2 02:00:05 2024
|