Magnesium in PDB 6yy0: Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1

All present enzymatic activity of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1:
7.1.2.2;

The binding sites of Magnesium atom in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 (pdb code 6yy0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1, PDB code: 6yy0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:24.2 occ:1.00 O A:HOH702 2.2 27.4 1.0 O2B A:ATP600 2.2 34.6 1.0 OG1 A:THR176 2.2 22.9 1.0 O A:HOH703 2.2 18.6 1.0 O A:HOH701 2.2 27.4 1.0 O2G A:ATP600 2.2 34.6 0.8 HB A:THR176 2.9 22.9 1.0 CB A:THR176 3.1 22.9 1.0 PG A:ATP600 3.1 34.6 0.8 O3G A:ATP600 3.4 34.6 0.8 PB A:ATP600 3.4 34.6 1.0 O3B A:ATP600 3.4 34.6 1.0 H A:THR176 3.5 22.9 1.0 HG21 A:THR176 3.8 22.9 1.0 CG2 A:THR176 4.0 22.9 1.0 O1A A:ATP600 4.1 34.6 1.0 N A:THR176 4.1 22.9 1.0 CA A:THR176 4.2 22.9 1.0 O1B A:ATP600 4.4 34.6 1.0 O3A A:ATP600 4.5 34.6 1.0 OD2 A:ASP269 4.5 20.9 1.0 O1G A:ATP600 4.5 34.6 0.8 HE2 A:LYS175 4.6 22.5 1.0 HA A:THR176 4.6 22.9 1.0 PA A:ATP600 4.6 34.6 1.0 HG22 A:THR176 4.6 22.9 1.0 HG23 A:THR176 4.6 22.9 1.0 HB2 A:LYS175 4.7 22.5 1.0 HE22 A:GLN208 4.7 22.6 1.0 O2A A:ATP600 4.8 34.6 1.0 OD1 A:ASP269 5.0 20.9 1.0

Magnesium binding site 2 out of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:31.0 occ:1.00 O2B B:ATP600 2.2 28.5 1.0 O B:HOH702 2.2 31.5 1.0 O B:HOH701 2.2 31.6 1.0 O2G B:ATP600 2.2 28.5 1.0 OG1 B:THR176 2.2 25.6 1.0 O B:HOH703 2.2 20.4 1.0 HB B:THR176 2.9 25.6 1.0 CB B:THR176 3.1 25.6 1.0 PB B:ATP600 3.3 28.5 1.0 PG B:ATP600 3.4 28.5 1.0 H B:THR176 3.5 25.6 1.0 O3B B:ATP600 3.6 28.5 1.0 HG21 B:THR176 3.8 25.6 1.0 O2A B:ATP600 4.0 28.5 1.0 CG2 B:THR176 4.1 25.6 1.0 O1G B:ATP600 4.1 28.5 1.0 O1B B:ATP600 4.1 28.5 1.0 N B:THR176 4.2 25.6 1.0 CA B:THR176 4.2 25.6 1.0 OD1 B:ASP269 4.2 21.4 1.0 OD2 B:ASP269 4.4 21.4 1.0 HA B:THR176 4.5 25.6 1.0 O3A B:ATP600 4.6 28.5 1.0 O3G B:ATP600 4.6 28.5 1.0 HG22 B:THR176 4.7 25.6 1.0 HG23 B:THR176 4.7 25.6 1.0 HG21 B:THR212 4.7 27.1 1.0 PA B:ATP600 4.7 28.5 1.0 HB2 B:LYS175 4.8 23.8 1.0 CG B:ASP269 4.8 21.4 1.0 OE1 B:GLN208 4.8 24.3 1.0

Magnesium binding site 3 out of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:20.8 occ:1.00 OG1 C:THR176 2.2 21.3 1.0 O C:HOH702 2.2 30.2 1.0 O C:HOH703 2.2 16.3 1.0 O2B C:ATP600 2.2 25.3 1.0 O C:HOH701 2.2 27.2 1.0 O2G C:ATP600 2.2 25.3 0.8 HB C:THR176 2.9 21.3 1.0 CB C:THR176 3.1 21.3 1.0 PG C:ATP600 3.2 25.3 0.8 PB C:ATP600 3.4 25.3 1.0 O3B C:ATP600 3.4 25.3 1.0 H C:THR176 3.5 21.3 1.0 O3G C:ATP600 3.6 25.3 0.8 O2A C:ATP600 3.6 25.3 1.0 HG21 C:THR176 3.7 21.3 1.0 CG2 C:THR176 4.0 21.3 1.0 OE1 C:GLN208 4.1 23.2 1.0 N C:THR176 4.2 21.3 1.0 CA C:THR176 4.2 21.3 1.0 O3A C:ATP600 4.4 25.3 1.0 O1B C:ATP600 4.4 25.3 1.0 PA C:ATP600 4.5 25.3 1.0 OD1 C:ASP269 4.5 19.2 1.0 O1G C:ATP600 4.6 25.3 0.8 HG22 C:THR176 4.6 21.3 1.0 HA C:THR176 4.6 21.3 1.0 HG23 C:THR176 4.6 21.3 1.0 OD2 C:ASP269 4.6 19.2 1.0 HB2 C:LYS175 4.8 21.3 1.0 HG21 C:THR212 4.9 23.7 1.0 O1A C:ATP600 4.9 25.3 1.0

Magnesium binding site 4 out of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:22.3 occ:1.00 O D:HOH701 2.2 31.2 1.0 O2B D:ADP600 2.2 26.6 1.0 O D:HOH703 2.2 18.3 1.0 OG1 D:THR167 2.2 23.2 1.0 O D:HOH702 2.2 24.7 1.0 O D:HOH704 2.2 26.7 1.0 HH12 D:ARG193 2.9 23.7 1.0 CB D:THR167 3.4 23.2 1.0 HB D:THR167 3.5 23.2 1.0 OE1 D:GLU196 3.6 26.6 1.0 NH1 D:ARG193 3.6 23.7 1.0 HH11 D:ARG193 3.6 23.7 1.0 PB D:ADP600 3.7 26.6 1.0 OE2 D:GLU196 3.7 26.6 1.0 H D:THR167 3.8 23.2 1.0 CD D:GLU196 4.1 26.6 1.0 HG21 D:THR167 4.1 23.2 1.0 OD2 D:ASP260 4.3 20.1 1.0 O3A D:ADP600 4.3 26.6 1.0 CG2 D:THR167 4.3 23.2 1.0 N D:THR167 4.4 23.2 1.0 HB2 D:LYS166 4.4 21.4 1.0 CA D:THR167 4.4 23.2 1.0 O3B D:ADP600 4.4 26.6 1.0 HE2 D:LYS166 4.4 21.4 1.0 O2A D:ADP600 4.5 26.6 1.0 HD21 D:ASN261 4.5 19.6 1.0 HA D:THR167 4.5 23.2 1.0 OD1 D:ASN261 4.6 19.6 1.0 O1B D:ADP600 4.6 26.6 1.0 OD1 D:ASP260 4.6 20.1 1.0 HH22 D:ARG193 4.7 23.7 1.0 HB2 D:GLU192 4.8 25.8 1.0 CZ D:ARG193 4.8 23.7 1.0 HG23 D:THR167 4.8 23.2 1.0 PA D:ADP600 4.8 26.6 1.0 CG D:ASP260 4.9 20.1 1.0 OE1 D:GLU192 4.9 25.8 1.0

Magnesium binding site 5 out of 5 in the Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Atp Synthase F1-Peripheral Stalk Domain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:18.9 occ:1.00 OG1 F:THR167 2.2 22.6 1.0 O F:HOH703 2.2 16.4 1.0 O F:HOH704 2.2 17.7 1.0 O2B F:ADP600 2.2 25.6 1.0 O F:HOH701 2.2 23.9 1.0 O F:HOH702 2.2 31.8 1.0 HB F:THR167 2.9 22.6 1.0 HH12 F:ARG193 3.0 23.0 1.0 CB F:THR167 3.1 22.6 1.0 PB F:ADP600 3.3 25.6 1.0 O3B F:ADP600 3.4 25.6 1.0 OE2 F:GLU196 3.5 24.8 1.0 HH11 F:ARG193 3.6 23.0 1.0 NH1 F:ARG193 3.6 23.0 1.0 H F:THR167 3.7 22.6 1.0 OE1 F:GLU196 3.7 24.8 1.0 HG21 F:THR167 3.8 22.6 1.0 O3A F:ADP600 4.0 25.6 1.0 CD F:GLU196 4.0 24.8 1.0 O2A F:ADP600 4.0 25.6 1.0 CG2 F:THR167 4.1 22.6 1.0 N F:THR167 4.2 22.6 1.0 CA F:THR167 4.2 22.6 1.0 OD2 F:ASP260 4.4 21.4 1.0 HB2 F:LYS166 4.4 19.9 1.0 HA F:THR167 4.5 22.6 1.0 PA F:ADP600 4.5 25.6 1.0 O1B F:ADP600 4.6 25.6 1.0 HE2 F:LYS166 4.6 19.9 1.0 HG22 F:THR167 4.7 22.6 1.0 HG23 F:THR167 4.7 22.6 1.0 HB2 F:GLU192 4.7 23.5 1.0 OD1 F:ASP260 4.8 21.4 1.0 CZ F:ARG193 4.8 23.0 1.0 OE2 F:GLU192 4.9 23.5 1.0 O1A F:ADP600 4.9 25.6 1.0 HH22 F:ARG193 4.9 23.0 1.0

T.E.Spikes, M.G.Montgomery, J.E.Walker. Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117