Magnesium in PDB 6yzh: Crystal Structure of P8C9 Bound to CK2ALPHA

All present enzymatic activity of Crystal Structure of P8C9 Bound to CK2ALPHA:
2.7.11.1;

The structure of Crystal Structure of P8C9 Bound to CK2ALPHA, PDB code: 6yzh was solved by E.Atkinson, J.Iegre, P.Brear, D.Baker, H.Sore, M.Hyvonen, D.Spring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.19 / 1.19
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.374, 65.019, 59.198, 90, 111.2, 90
R / Rfree (%)	17.2 / 19

The structure of Crystal Structure of P8C9 Bound to CK2ALPHA also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of P8C9 Bound to CK2ALPHA (pdb code 6yzh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of P8C9 Bound to CK2ALPHA, PDB code: 6yzh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of P8C9 Bound to CK2ALPHA


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of P8C9 Bound to CK2ALPHA within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:10.8 occ:1.00 O1A A:ADP403 2.0 10.6 1.0 OD2 A:ASP175 2.1 10.9 1.0 O1B A:ADP403 2.1 12.7 1.0 OD1 A:ASN161 2.1 10.8 1.0 CG A:ASP175 3.1 11.6 1.0 CG A:ASN161 3.1 10.2 1.0 PB A:ADP403 3.2 12.9 1.0 PA A:ADP403 3.3 11.6 1.0 ND2 A:ASN161 3.5 12.2 1.0 O3A A:ADP403 3.5 13.2 1.0 CB A:ASP175 3.5 10.8 1.0 O2B A:ADP403 3.7 14.1 1.0 MG A:MG402 3.8 13.7 1.0 O A:HOH559 4.0 26.0 1.0 OD1 A:ASP175 4.1 12.3 1.0 O5' A:ADP403 4.2 11.8 1.0 C5' A:ADP403 4.3 10.8 1.0 O3' A:ADP403 4.3 13.0 1.0 O2A A:ADP403 4.3 12.2 1.0 CB A:ASN161 4.5 10.7 1.0 OD2 A:ASP156 4.6 15.6 1.0 O3B A:ADP403 4.6 15.2 1.0 O A:HIS160 4.7 12.3 1.0 O A:HOH610 4.8 15.1 1.0 C3' A:ADP403 4.8 12.2 1.0 CA A:ASN161 4.9 9.9 1.0 CA A:ASP175 4.9 10.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of P8C9 Bound to CK2ALPHA


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of P8C9 Bound to CK2ALPHA within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:13.7 occ:1.00 O A:HOH705 2.0 14.2 1.0 O2B A:ADP403 2.0 14.1 1.0 OD1 A:ASP175 2.1 12.3 1.0 O A:HOH610 2.1 15.1 1.0 OD2 A:ASP175 2.2 10.9 1.0 CG A:ASP175 2.4 11.6 1.0 PB A:ADP403 3.2 12.9 1.0 O1B A:ADP403 3.4 12.7 1.0 MG A:MG401 3.8 10.8 1.0 CB A:ASP175 4.0 10.8 1.0 OD2 A:ASP156 4.0 15.6 1.0 O A:HOH785 4.1 25.2 1.0 O A:HOH593 4.1 16.8 1.0 O3B A:ADP403 4.2 15.2 1.0 O3A A:ADP403 4.3 13.2 1.0 NZ A:LYS68 4.3 12.3 1.0 N A:GLY177 4.5 10.7 1.0 O A:HOH735 4.5 27.2 1.0 CA A:GLY177 4.5 12.1 1.0 O1A A:ADP403 4.6 10.6 1.0 CA A:ASP175 4.7 10.0 1.0 O A:HOH580 4.7 12.8 1.0 N A:LEU178 4.8 11.3 1.0 C A:GLY177 4.8 11.8 1.0 O A:ASP175 4.8 11.1 1.0 C A:ASP175 4.8 10.4 1.0 PA A:ADP403 4.9 11.6 1.0 ND2 A:ASN161 5.0 12.2 1.0 CG A:LEU178 5.0 16.3 1.0

E.Atkinson, J.Iegre, P.Brear, D.Baker, H.Sore, M.Hyvonen, D.Spring. Crystal Structure of P8C9 Bound to CK2ALPHA To Be Published.