Magnesium in PDB 6z1u: Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3

All present enzymatic activity of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3:
7.1.2.2;

The binding sites of Magnesium atom in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 (pdb code 6z1u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3, PDB code: 6z1u:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:30.1 occ:1.00 O A:HOH703 2.2 26.1 1.0 O2B A:ATP600 2.2 33.7 1.0 O A:HOH701 2.2 33.2 1.0 O2G A:ATP600 2.2 33.7 1.0 O A:HOH702 2.2 27.7 1.0 OG1 A:THR176 2.2 29.8 1.0 HB A:THR176 2.7 29.8 1.0 CB A:THR176 3.0 29.8 1.0 PG A:ATP600 3.4 33.7 1.0 PB A:ATP600 3.4 33.7 1.0 H A:THR176 3.4 29.8 1.0 O3B A:ATP600 3.5 33.7 1.0 HG21 A:THR176 3.7 29.8 1.0 OD2 A:ASP269 3.8 29.2 1.0 HE21 A:GLN208 3.8 30.1 1.0 CG2 A:THR176 3.9 29.8 1.0 O1G A:ATP600 3.9 33.7 1.0 O2A A:ATP600 4.0 33.7 1.0 N A:THR176 4.1 29.8 1.0 CA A:THR176 4.1 29.8 1.0 OD1 A:ASP269 4.2 29.2 1.0 O1B A:ATP600 4.3 33.7 1.0 NE2 A:GLN208 4.3 30.1 1.0 HE22 A:GLN208 4.4 30.1 1.0 CG A:ASP269 4.5 29.2 1.0 HG22 A:THR176 4.5 29.8 1.0 HA A:THR176 4.5 29.8 1.0 HB2 A:LYS175 4.5 29.9 1.0 O3A A:ATP600 4.5 33.7 1.0 HG23 A:THR176 4.6 29.8 1.0 O3G A:ATP600 4.6 33.7 1.0 PA A:ATP600 4.7 33.7 1.0 HE2 A:LYS175 4.8 29.9 1.0 HH A:TYR203 4.9 22.8 1.0

Magnesium binding site 2 out of 5 in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:33.5 occ:1.00 O B:HOH703 2.2 23.9 1.0 O B:HOH702 2.2 26.0 1.0 O B:HOH701 2.2 34.7 1.0 OG1 B:THR176 2.2 29.2 1.0 O2B B:ATP600 2.2 34.9 1.0 O2G B:ATP600 2.2 34.9 0.8 O1G B:ATP600 2.8 34.9 0.8 PG B:ATP600 2.9 34.9 0.8 HB B:THR176 3.2 29.2 1.0 CB B:THR176 3.3 29.2 1.0 H B:THR176 3.4 29.2 1.0 PB B:ATP600 3.4 34.9 1.0 O3B B:ATP600 3.5 34.9 1.0 OD1 B:ASP269 4.0 26.2 1.0 N B:THR176 4.0 29.2 1.0 OD2 B:ASP269 4.1 26.2 1.0 HG21 B:THR176 4.1 29.2 1.0 CA B:THR176 4.2 29.2 1.0 HB2 B:LYS175 4.2 28.5 1.0 O3A B:ATP600 4.3 34.9 1.0 CG2 B:THR176 4.3 29.2 1.0 O3G B:ATP600 4.3 34.9 0.8 OE1 B:GLN208 4.4 29.2 1.0 HE2 B:LYS175 4.5 28.5 1.0 CG B:ASP269 4.5 26.2 1.0 HA B:THR176 4.5 29.2 1.0 O1B B:ATP600 4.6 34.9 1.0 HH12 E:ARG360 4.7 37.6 1.0 OE2 B:GLU328 4.7 28.6 1.0 O2A B:ATP600 4.8 34.9 1.0 HG23 B:THR176 4.8 29.2 1.0 HG3 B:GLN208 4.9 29.2 1.0 PA B:ATP600 4.9 34.9 1.0

Magnesium binding site 3 out of 5 in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:29.6 occ:1.00 O C:HOH701 2.2 34.1 1.0 OG1 C:THR176 2.2 31.1 1.0 O C:HOH703 2.2 23.9 1.0 O2B C:ATP600 2.2 32.9 1.0 O2G C:ATP600 2.2 32.9 0.8 O C:HOH702 2.2 35.0 1.0 O3B C:ATP600 3.1 32.9 1.0 HB C:THR176 3.1 31.1 1.0 PG C:ATP600 3.2 32.9 0.8 CB C:THR176 3.2 31.1 1.0 PB C:ATP600 3.2 32.9 1.0 H C:THR176 3.4 31.1 1.0 HE21 C:GLN208 3.6 31.3 1.0 O3G C:ATP600 3.8 32.9 0.8 O1A C:ATP600 3.9 32.9 1.0 HG21 C:THR176 3.9 31.1 1.0 HE22 C:GLN208 4.1 31.3 1.0 N C:THR176 4.1 31.1 1.0 NE2 C:GLN208 4.2 31.3 1.0 CG2 C:THR176 4.2 31.1 1.0 O3A C:ATP600 4.2 32.9 1.0 CA C:THR176 4.3 31.1 1.0 OD1 C:ASP269 4.3 29.5 1.0 O1B C:ATP600 4.4 32.9 1.0 OD2 C:ASP269 4.4 29.5 1.0 PA C:ATP600 4.4 32.9 1.0 O1G C:ATP600 4.5 32.9 0.8 HB2 C:LYS175 4.6 27.7 1.0 HG23 C:THR176 4.7 31.1 1.0 O2A C:ATP600 4.7 32.9 1.0 HA C:THR176 4.7 31.1 1.0 CG C:ASP269 4.8 29.5 1.0 HE2 C:LYS175 4.9 27.7 1.0 HG22 C:THR176 4.9 31.1 1.0 H C:LYS175 5.0 27.7 1.0 HH C:TYR203 5.0 22.9 1.0

Magnesium binding site 4 out of 5 in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:29.0 occ:1.00 OG1 D:THR167 2.2 30.4 1.0 O2B D:ADP600 2.2 35.3 1.0 O D:HOH701 2.2 28.9 1.0 O D:HOH704 2.2 34.4 1.0 O D:HOH703 2.2 23.1 1.0 O D:HOH702 2.2 40.0 1.0 OE2 D:GLU192 2.5 30.6 1.0 HH21 D:ARG193 3.2 31.6 1.0 OE2 D:GLU196 3.3 33.4 1.0 CB D:THR167 3.3 30.4 1.0 HB D:THR167 3.4 30.4 1.0 PB D:ADP600 3.6 35.3 1.0 CD D:GLU192 3.8 30.6 1.0 H D:THR167 3.9 30.4 1.0 CD D:GLU196 4.0 33.4 1.0 HG21 D:THR167 4.0 30.4 1.0 NH2 D:ARG193 4.0 31.6 1.0 HE D:ARG193 4.0 31.6 1.0 OE1 D:GLU196 4.1 33.4 1.0 O2A D:ADP600 4.1 35.3 1.0 O3B D:ADP600 4.3 35.3 1.0 CG2 D:THR167 4.3 30.4 1.0 CA D:THR167 4.4 30.4 1.0 N D:THR167 4.4 30.4 1.0 O3A D:ADP600 4.4 35.3 1.0 HH22 D:ARG193 4.4 31.6 1.0 OD1 D:ASP260 4.5 27.5 1.0 OD2 D:ASP260 4.5 27.5 1.0 HA D:THR167 4.5 30.4 1.0 OE1 D:GLU192 4.5 30.6 1.0 O1B D:ADP600 4.6 35.3 1.0 HB2 D:LYS166 4.6 28.1 1.0 HG3 D:GLU192 4.6 30.6 1.0 NE D:ARG193 4.7 31.6 1.0 PA D:ADP600 4.7 35.3 1.0 HB3 D:GLU192 4.8 30.6 1.0 CG D:GLU192 4.8 30.6 1.0 HZ1 D:LYS166 4.8 28.1 1.0 HG23 D:THR167 4.8 30.4 1.0 HZ3 D:LYS166 4.8 28.1 1.0 HE2 D:LYS166 4.8 28.1 1.0 CZ D:ARG193 4.8 31.6 1.0 CG D:ASP260 4.9 27.5 1.0 HG22 D:THR167 5.0 30.4 1.0

Magnesium binding site 5 out of 5 in the Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Atp Synthase F1C8-Peripheral Stalk Domain, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:27.0 occ:1.00 OG1 F:THR167 2.2 31.2 1.0 O2B F:ADP600 2.2 35.3 1.0 O F:HOH704 2.2 23.9 1.0 O F:HOH702 2.2 38.4 1.0 O F:HOH701 2.2 29.0 1.0 O F:HOH703 2.2 27.0 1.0 OE2 F:GLU192 2.4 28.4 1.0 HH12 F:ARG193 2.9 30.1 1.0 CB F:THR167 3.4 31.2 1.0 HH11 F:ARG193 3.5 30.1 1.0 NH1 F:ARG193 3.5 30.1 1.0 HB F:THR167 3.5 31.2 1.0 OE1 F:GLU196 3.6 32.7 1.0 CD F:GLU192 3.7 28.4 1.0 PB F:ADP600 3.7 35.3 1.0 HG21 F:THR167 3.9 31.2 1.0 OE2 F:GLU196 4.0 32.7 1.0 H F:THR167 4.1 31.2 1.0 HG3 F:GLU192 4.1 28.4 1.0 CD F:GLU196 4.2 32.7 1.0 CG2 F:THR167 4.2 31.2 1.0 OD2 F:ASP260 4.3 28.1 1.0 O3A F:ADP600 4.3 35.3 1.0 OD1 F:ASP260 4.3 28.1 1.0 CA F:THR167 4.4 31.2 1.0 O3B F:ADP600 4.5 35.3 1.0 CG F:GLU192 4.5 28.4 1.0 O2A F:ADP600 4.5 35.3 1.0 HE2 F:LYS166 4.5 27.8 1.0 N F:THR167 4.5 31.2 1.0 OE1 F:GLU192 4.5 28.4 1.0 HA F:THR167 4.6 31.2 1.0 O1B F:ADP600 4.6 35.3 1.0 HB3 F:GLU192 4.6 28.4 1.0 HB2 F:LYS166 4.7 27.8 1.0 CZ F:ARG193 4.7 30.1 1.0 HG23 F:THR167 4.7 31.2 1.0 HZ1 F:LYS166 4.8 27.8 1.0 CG F:ASP260 4.8 28.1 1.0 HH22 B:ARG373 4.8 34.8 1.0 HH22 F:ARG193 4.8 30.1 1.0 PA F:ADP600 4.9 35.3 1.0 HZ3 F:LYS166 4.9 27.8 1.0 HG22 F:THR167 5.0 31.2 1.0

T.E.Spikes, M.G.Montgomery, J.E.Walker. Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117