Magnesium in PDB 6z3r: Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq

All present enzymatic activity of Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq:
2.7.11.1;

The binding sites of Magnesium atom in the Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq (pdb code 6z3r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq, PDB code: 6z3r:

Magnesium binding site 1 out of 1 in the Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of SMG1-8-9 Kinase Complex Bound to UPF1-Lsq within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:39.5 occ:1.00 OG C:SER218 1.9 39.6 1.0 OG1 C:THR253 2.1 45.3 1.0 O3B C:ATP601 2.4 46.0 1.0 O1G C:ATP601 2.7 46.0 1.0 HB C:THR253 3.0 45.3 1.0 CB C:THR253 3.1 45.3 1.0 PG C:ATP601 3.2 46.0 1.0 CB C:SER218 3.2 39.6 1.0 O3A C:ATP601 3.3 46.0 1.0 HB2 C:SER218 3.3 39.6 1.0 H C:SER218 3.3 39.6 1.0 PB C:ATP601 3.5 46.0 1.0 HG21 C:THR253 3.5 45.3 1.0 HB3 C:SER218 3.7 39.6 1.0 CG2 C:THR253 3.9 45.3 1.0 N C:SER218 4.0 39.6 1.0 HB2 C:LYS217 4.1 39.2 1.0 O3G C:ATP601 4.2 46.0 1.0 HE2 C:LYS217 4.2 39.2 1.0 HG23 C:THR253 4.2 45.3 1.0 O2G C:ATP601 4.2 46.0 1.0 CA C:SER218 4.2 39.6 1.0 H C:THR253 4.2 45.3 1.0 O1A C:ATP601 4.3 46.0 1.0 O2B C:ATP601 4.3 46.0 1.0 O C:ARG239 4.3 44.9 1.0 CA C:THR253 4.3 45.3 1.0 OD2 C:ASP269 4.4 41.2 1.0 N C:THR253 4.4 45.3 1.0 PA C:ATP601 4.4 46.0 1.0 O1B C:ATP601 4.5 46.0 1.0 HA C:ALA240 4.5 47.1 1.0 HA C:SER218 4.5 39.6 1.0 HZ3 C:LYS217 4.6 39.2 1.0 HG22 C:THR253 4.7 45.3 1.0 HA C:THR253 4.7 45.3 1.0 O C:THR270 4.8 42.7 1.0 HB3 C:GLN252 4.8 48.1 1.0 OD1 C:ASP269 4.9 41.2 1.0 CG C:ASP269 5.0 41.2 1.0

L.M.Langer, Y.Gat, F.Bonneau, E.Conti. Structure of Substrate-Bound SMG1-8-9 Kinase Complex Reveals Molecular Basis For Phosphorylation Specificity. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32469312
DOI: 10.7554/ELIFE.57127