Magnesium in PDB 6z5u: Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp

The binding sites of Magnesium atom in the Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp (pdb code 6z5u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp, PDB code: 6z5u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg302 b:41.0 occ:1.00 OE1 K:GLN96 1.6 41.0 1.0 OE2 K:GLU174 1.6 41.0 1.0 O2G K:ANP301 2.0 41.0 1.0 O2B K:ANP301 2.1 41.0 1.0 CD K:GLN96 2.3 41.0 1.0 CD K:GLU174 2.5 41.0 1.0 NE2 K:GLN96 2.9 41.0 1.0 PG K:ANP301 3.3 41.0 1.0 OE1 K:GLU174 3.3 41.0 1.0 CG K:GLU174 3.4 41.0 1.0 PB K:ANP301 3.4 41.0 1.0 CG K:GLN96 3.6 41.0 1.0 N3B K:ANP301 3.6 41.0 1.0 O3G K:ANP301 3.9 41.0 1.0 O1B K:ANP301 4.0 41.0 1.0 O1G K:ANP301 4.5 41.0 1.0 CB K:GLN96 4.6 41.0 1.0 O3A K:ANP301 4.6 41.0 1.0 CB K:GLU174 4.7 41.0 1.0 OD1 K:ASP173 4.8 41.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the A. Baumannii Mlabdef Complex Bound to Appnhp within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg301 b:41.0 occ:1.00 OE2 L:GLU174 1.6 41.0 1.0 O2G L:ANP302 2.0 41.0 1.0 O2B L:ANP302 2.1 41.0 1.0 CD L:GLU174 2.4 41.0 1.0 OE1 L:GLU174 2.8 41.0 1.0 OE1 L:GLN96 3.0 41.0 1.0 OG1 L:THR52 3.2 41.0 1.0 PG L:ANP302 3.3 41.0 1.0 PB L:ANP302 3.4 41.0 1.0 N3B L:ANP302 3.5 41.0 1.0 CG L:GLU174 3.6 41.0 1.0 CD L:GLN96 3.7 41.0 1.0 O3G L:ANP302 4.0 41.0 1.0 NE2 L:GLN96 4.0 41.0 1.0 O1B L:ANP302 4.2 41.0 1.0 O3A L:ANP302 4.4 41.0 1.0 OD1 L:ASP173 4.4 41.0 1.0 O1G L:ANP302 4.4 41.0 1.0 CB L:GLU174 4.5 41.0 1.0 CB L:THR52 4.5 41.0 1.0 N L:THR52 4.7 41.0 1.0 OD2 L:ASP173 4.8 41.0 1.0 CG L:GLN96 4.8 41.0 1.0 CG L:ASP173 4.9 41.0 1.0

D.Mann, J.Fan, D.P.Farrell, K.Somboon, A.Muenks, S.B.Tzokov, S.Khalid, F.Dimaio, S.I.Miller, J.R.C.Bergeron. Structure and Lipid Dynamics in the A. Baumannii Maintenance of Lipid Asymmetry (Mla) Inner Membrane Complex Biorxiv 2020.
DOI: 10.1101/2020.05.30.125013