Magnesium in PDB 6z6g: Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage

All present enzymatic activity of Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage:
2.7.7.48;

The structure of Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage (pdb code 6z6g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage, PDB code: 6z6g:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of La Crosse Virus Polymerase at Pre-Initiation Stage within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2302 b:30.7 occ:1.00 OD1 A:ASP1188 2.2 35.5 1.0 OD1 A:ASP1060 2.7 36.2 1.0 CG A:ASP1188 2.9 35.5 1.0 OD2 A:ASP1188 3.0 35.5 1.0 O A:ALA1059 3.1 31.4 1.0 OE1 A:GLU1237 3.6 31.2 1.0 CG A:ASP1060 3.7 36.2 1.0 C A:ALA1059 3.9 31.4 1.0 O A:GLU1237 4.1 31.2 1.0 OD2 A:ASP1060 4.1 36.2 1.0 O A:ASN1189 4.2 30.9 1.0 CB A:ASP1188 4.3 35.5 1.0 N A:ALA1059 4.4 31.4 1.0 CD A:GLU1237 4.4 31.2 1.0 N A:ASP1060 4.5 36.2 1.0 C A:ASN1058 4.5 25.2 1.0 O A:ASN1058 4.5 25.2 1.0 OE2 A:GLU1237 4.6 31.2 1.0 N A:ASN1189 4.6 30.9 1.0 CA A:ASP1060 4.7 36.2 1.0 CA A:ALA1059 4.8 31.4 1.0 CB A:ASP1060 4.8 36.2 1.0 CA A:ASP1188 4.8 35.5 1.0 O A:PHE1238 4.8 33.1 1.0

B.Arragain, G.Effantin, P.Gerlach, J.Reguera, G.Schoehn, S.Cusack, H.Malet. Pre-Initiation and Elongation Structures of Full-Length La Crosse Virus Polymerase Reveal Functionally Important Conformational Changes. Nat Commun V. 11 3590 2020.
ISSN: ESSN 2041-1723
PubMed: 32681014
DOI: 10.1038/S41467-020-17349-4