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Magnesium in PDB 6z6u: 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope

Enzymatic activity of 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope

All present enzymatic activity of 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope:
1.16.3.1;

Other elements in 6z6u:

The structure of 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope also contains other interesting chemical elements:

Sodium (Na) 24 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope (pdb code 6z6u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope, PDB code: 6z6u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6z6u

Go back to Magnesium Binding Sites List in 6z6u
Magnesium binding site 1 out of 2 in the 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg202

b:51.7
occ:1.00
OE2 M:GLU134 2.4 35.6 1.0
OE2 Q:GLU134 2.4 35.6 1.0
OE2 a:GLU134 2.4 35.6 1.0
OD1 Q:ASP131 3.3 43.4 1.0
OD1 M:ASP131 3.3 43.4 1.0
OD1 a:ASP131 3.3 43.4 1.0
CD M:GLU134 3.7 34.3 1.0
CD Q:GLU134 3.7 34.3 1.0
CD a:GLU134 3.7 34.3 1.0
HA Q:ASP131 4.1 21.5 1.0
HA M:ASP131 4.1 21.5 1.0
HA a:ASP131 4.1 21.5 1.0
OE1 M:GLU134 4.2 40.6 1.0
OE1 Q:GLU134 4.2 40.6 1.0
OE1 a:GLU134 4.2 40.6 1.0
HB2 M:GLU134 4.3 31.7 1.0
HB2 Q:GLU134 4.3 31.7 1.0
HB2 a:GLU134 4.3 31.7 1.0
CG Q:ASP131 4.4 34.0 1.0
CG M:ASP131 4.4 34.0 1.0
CG a:ASP131 4.4 34.0 1.0
HB2 Q:ASP131 4.4 25.5 1.0
HB2 M:ASP131 4.4 25.5 1.0
HB2 a:ASP131 4.4 25.5 1.0
HB3 M:GLU134 4.5 31.7 1.0
HB3 Q:GLU134 4.5 31.7 1.0
HB3 a:GLU134 4.5 31.7 1.0
CB M:GLU134 4.8 31.7 1.0
CB Q:GLU134 4.8 31.7 1.0
CB a:GLU134 4.8 31.7 1.0
CB Q:ASP131 4.8 25.5 1.0
CB M:ASP131 4.8 25.5 1.0
CB a:ASP131 4.8 25.5 1.0
CG M:GLU134 4.8 32.9 1.0
CG Q:GLU134 4.8 32.9 1.0
CG a:GLU134 4.8 32.9 1.0
CA Q:ASP131 5.0 21.5 1.0
CA M:ASP131 5.0 21.5 1.0
CA a:ASP131 5.0 21.5 1.0

Magnesium binding site 2 out of 2 in 6z6u

Go back to Magnesium Binding Sites List in 6z6u
Magnesium binding site 2 out of 2 in the 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg202

b:51.7
occ:1.00
OE2 W:GLU134 2.4 35.6 1.0
OE2 G:GLU134 2.4 35.6 1.0
OE2 6:GLU134 2.4 35.6 1.0
OD1 G:ASP131 3.3 43.4 1.0
OD1 W:ASP131 3.3 43.4 1.0
OD1 6:ASP131 3.3 43.4 1.0
CD W:GLU134 3.7 34.3 1.0
CD G:GLU134 3.7 34.3 1.0
CD 6:GLU134 3.7 34.3 1.0
HA G:ASP131 4.1 21.5 1.0
HA W:ASP131 4.1 21.5 1.0
HA 6:ASP131 4.1 21.5 1.0
OE1 W:GLU134 4.2 40.6 1.0
OE1 G:GLU134 4.2 40.6 1.0
OE1 6:GLU134 4.2 40.6 1.0
HB2 W:GLU134 4.3 31.7 1.0
HB2 G:GLU134 4.3 31.7 1.0
HB2 6:GLU134 4.3 31.7 1.0
CG G:ASP131 4.4 34.0 1.0
CG W:ASP131 4.4 34.0 1.0
CG 6:ASP131 4.4 34.0 1.0
HB2 G:ASP131 4.4 25.5 1.0
HB2 W:ASP131 4.4 25.5 1.0
HB2 6:ASP131 4.4 25.5 1.0
HB3 W:GLU134 4.5 31.7 1.0
HB3 G:GLU134 4.5 31.7 1.0
HB3 6:GLU134 4.5 31.7 1.0
CB W:GLU134 4.8 31.7 1.0
CB G:GLU134 4.8 31.7 1.0
CB 6:GLU134 4.8 31.7 1.0
CB G:ASP131 4.8 25.5 1.0
CB W:ASP131 4.8 25.5 1.0
CB 6:ASP131 4.8 25.5 1.0
CG W:GLU134 4.8 32.9 1.0
CG G:GLU134 4.8 32.9 1.0
CG 6:GLU134 4.8 32.9 1.0
CA G:ASP131 5.0 21.5 1.0
CA W:ASP131 5.0 21.5 1.0
CA 6:ASP131 5.0 21.5 1.0

Reference:

K.M.Yip, N.Fischer, E.Paknia, A.Chari, H.Stark. 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope To Be Published.
Page generated: Wed Oct 2 02:06:44 2024

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