Magnesium in PDB 6z8k: La Crosse Virus Polymerase at Elongation Mimicking Stage

All present enzymatic activity of La Crosse Virus Polymerase at Elongation Mimicking Stage:
2.7.7.48;

The structure of La Crosse Virus Polymerase at Elongation Mimicking Stage also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the La Crosse Virus Polymerase at Elongation Mimicking Stage (pdb code 6z8k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the La Crosse Virus Polymerase at Elongation Mimicking Stage, PDB code: 6z8k:

Magnesium binding site 1 out of 1 in the La Crosse Virus Polymerase at Elongation Mimicking Stage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of La Crosse Virus Polymerase at Elongation Mimicking Stage within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2302 b:30.0 occ:1.00 OD1 A:ASP1188 2.3 61.0 1.0 OE1 A:GLU1237 2.8 53.7 1.0 CG A:ASP1188 3.1 61.0 1.0 OD1 A:ASP1060 3.1 61.9 1.0 OD2 A:ASP1188 3.1 61.0 1.0 O A:GLU1237 3.3 53.7 1.0 O A:ALA1059 3.7 56.0 1.0 CD A:GLU1237 3.9 53.7 1.0 CG A:ASP1060 4.0 61.9 1.0 OD2 A:ASP1060 4.2 61.9 1.0 O A:ASN1189 4.3 54.9 1.0 OE2 A:GLU1237 4.3 53.7 1.0 C A:ALA1059 4.3 56.0 1.0 C A:ASN1058 4.4 52.8 1.0 C A:GLU1237 4.4 53.7 1.0 N A:ALA1059 4.4 56.0 1.0 CB A:ASP1188 4.5 61.0 1.0 O A:ASN1058 4.5 52.8 1.0 CB A:ASN1058 4.6 52.8 1.0 O A:PHE1238 4.6 55.1 1.0 CA A:ASN1058 4.7 52.8 1.0 C A:PHE1238 4.9 55.1 1.0 CA A:PHE1238 4.9 55.1 1.0 N A:ASN1189 5.0 54.9 1.0 N A:ASP1060 5.0 61.9 1.0 CA A:ALA1059 5.0 56.0 1.0

B.Arragain, G.Effantin, P.Gerlach, J.Reguera, G.Schoehn, S.Cusack, H.Malet. Pre-Initiation and Elongation Structures of Full-Length La Crosse Virus Polymerase Reveal Functionally Important Conformational Changes. Nat Commun V. 11 3590 2020.
ISSN: ESSN 2041-1723
PubMed: 32681014
DOI: 10.1038/S41467-020-17349-4