Magnesium in PDB 6zbs: Beta Odap Synthetase (Bos)

The structure of Beta Odap Synthetase (Bos), PDB code: 6zbs was solved by O.Dym, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.81 / 2.35
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.2, 66.2, 226.38, 90, 90, 90
R / Rfree (%)	20.6 / 25.9

The binding sites of Magnesium atom in the Beta Odap Synthetase (Bos) (pdb code 6zbs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Beta Odap Synthetase (Bos), PDB code: 6zbs:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Beta Odap Synthetase (Bos)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Beta Odap Synthetase (Bos) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:52.4 occ:1.00 ND2 A:ASN130 3.1 24.7 1.0 O4 A:PEG504 3.6 48.7 1.0 CB A:ASN130 3.8 26.6 1.0 CG A:ASN130 3.9 30.3 1.0 C4 A:PEG504 4.2 48.5 1.0 OG A:SER125 4.5 37.1 1.0 CA A:SER125 4.6 32.3 1.0 CB A:SER125 4.9 29.9 1.0

Magnesium binding site 2 out of 2 in the Beta Odap Synthetase (Bos)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Beta Odap Synthetase (Bos) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:56.6 occ:1.00 O A:PRO373 3.3 38.1 1.0 O A:PHE375 3.4 36.5 1.0 O A:HOH680 4.0 39.7 1.0 O A:TRP374 4.1 39.0 1.0 C A:TRP374 4.2 36.6 1.0 C A:PHE375 4.2 32.9 1.0 CB A:ALA406 4.2 32.6 1.0 CA A:TRP374 4.2 39.8 1.0 C A:PRO373 4.4 34.7 1.0 CA A:ASP376 4.5 33.4 1.0 N A:ASP376 4.6 35.4 1.0 N A:PHE375 4.8 35.6 1.0 N A:TRP374 4.8 34.0 1.0

M.Goldsmith, S.Barad, M.Knafo, A.Savidor, S.Ben-Dor, A.Brandis, T.Mehlman, Y.Peleg, S.Albeck, O.Dym, E.Ben-Zeev, R.S.Barbole, A.Aharoni, Z.Reich. Identification and Characterization of the Key Enzyme in the Biosynthesis of the Neurotoxin Beta-Odap in Grass Pea. J.Biol.Chem. V. 298 01806 2022.
ISSN: ESSN 1083-351X
PubMed: 35271851
DOI: 10.1016/J.JBC.2022.101806