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Magnesium in PDB 6zce: Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex

Other elements in 6zce:

The structure of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Iron (Fe) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 6zce). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 6zce:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6zce

Go back to Magnesium Binding Sites List in 6zce
Magnesium binding site 1 out of 2 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Mg702

b:21.1
occ:1.00
O2B k:ATP703 2.2 28.5 1.0
O1G k:ATP703 2.2 28.5 1.0
O3G k:ATP703 2.2 28.5 1.0
PG k:ATP703 2.6 28.5 1.0
PB k:ATP703 3.0 28.5 1.0
O3B k:ATP703 3.1 28.5 1.0
O1B k:ATP703 3.6 28.5 1.0
O2G k:ATP703 4.0 28.5 1.0
CB k:THR392 4.4 0.7 1.0
O3A k:ATP703 4.5 28.5 1.0
CB k:LYS391 4.7 0.7 1.0
N k:THR392 4.7 0.7 1.0

Magnesium binding site 2 out of 2 in 6zce

Go back to Magnesium Binding Sites List in 6zce
Magnesium binding site 2 out of 2 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Mg704

b:18.9
occ:1.00
O1B k:ADP701 2.4 23.4 1.0
PB k:ADP701 3.7 23.4 1.0
O2B k:ADP701 4.1 23.4 1.0
CB k:LYS116 4.2 0.7 1.0
O1A k:ADP701 4.5 23.4 1.0
CB k:VAL277 4.6 0.8 1.0
O2A k:ADP701 4.7 23.4 1.0
O3B k:ADP701 4.7 23.4 1.0
O3A k:ADP701 4.7 23.4 1.0
PA k:ADP701 4.8 23.4 1.0
CB k:GLU247 4.9 0.8 1.0
N k:GLU247 5.0 0.8 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Wed Oct 2 02:16:41 2024

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