Magnesium in PDB 6zcj: 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure

Protein crystallography data

The structure of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure, PDB code: 6zcj was solved by L.Soini, S.Leysen, J.Davis, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.40 / 1.53
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.098, 111.876, 62.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure (pdb code 6zcj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure, PDB code: 6zcj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6zcj

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Magnesium binding site 1 out of 5 in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:20.6
occ:0.50
OE1 A:GLU2 2.4 27.5 1.0
O A:HOH430 2.4 26.4 1.0
O A:HOH640 2.7 45.6 1.0
CD A:GLU2 3.4 30.4 1.0
OE2 A:GLU2 3.8 25.6 1.0
O A:HOH584 4.3 25.1 1.0
O A:HOH685 4.4 25.8 1.0
CG A:GLU2 4.7 23.9 1.0
CA A:GLU2 4.9 22.3 1.0
N A:ARG3 4.9 20.5 1.0
CB A:GLU2 5.0 22.3 1.0
O A:HOH448 5.0 37.9 1.0

Magnesium binding site 2 out of 5 in 6zcj

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Magnesium binding site 2 out of 5 in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:42.4
occ:1.00
O A:HOH442 2.8 31.8 1.0
O A:HOH506 3.0 31.4 1.0
O A:HOH610 3.2 27.7 1.0
O A:GLU110 3.7 26.9 1.0
CA A:GLY112 3.7 25.1 1.0
N A:GLY112 3.8 24.5 1.0
O A:HOH629 4.1 46.3 1.0
C A:GLY112 4.7 28.2 1.0
OE1 A:GLU35 4.7 27.3 1.0
C A:GLU110 4.7 26.1 1.0
C A:ALA111 4.8 25.3 1.0
OE2 A:GLU35 4.8 30.1 1.0
N A:ASP113 4.9 23.6 1.0

Magnesium binding site 3 out of 5 in 6zcj

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Magnesium binding site 3 out of 5 in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:27.3
occ:1.00
O A:HOH501 2.3 42.4 1.0
OE1 A:GLU75 2.5 42.7 1.0
O A:HOH599 2.6 50.3 1.0
CD A:GLU75 3.7 44.9 1.0
CB A:GLU75 4.6 56.2 1.0
OE2 A:GLU75 4.6 65.0 1.0
CG A:GLU75 4.6 41.1 1.0
O A:GLY73 4.7 53.9 1.0
CA A:GLU75 4.8 75.2 1.0

Magnesium binding site 4 out of 5 in 6zcj

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Magnesium binding site 4 out of 5 in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:19.6
occ:1.00
OE2 A:GLU188 2.3 26.9 1.0
CD A:GLU188 3.3 25.8 1.0
CG A:GLU188 3.8 23.1 1.0
OE1 A:GLU188 4.4 26.6 1.0
O A:HOH681 4.5 35.9 1.0

Magnesium binding site 5 out of 5 in 6zcj

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Magnesium binding site 5 out of 5 in the 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg305

b:40.0
occ:1.00
O A:THR228 2.4 32.9 1.0
OXT A:THR231 2.4 55.4 1.0
C A:THR231 3.6 55.3 1.0
C A:THR228 3.6 34.5 1.0
O A:THR231 4.1 53.7 1.0
CG2 A:THR228 4.2 36.5 1.0
CA A:THR228 4.3 28.4 1.0
N A:LEU229 4.6 30.5 1.0
N A:THR231 4.6 33.1 1.0
CA A:THR231 4.7 33.6 1.0
CA A:LEU229 4.8 28.8 1.0
C A:LEU229 4.8 33.3 1.0
O A:LEU229 4.8 31.7 1.0
CB A:THR228 4.9 32.7 1.0
OG1 A:THR231 4.9 40.3 1.0

Reference:

L.Soini, S.Leysen, J.Davis, C.Ottmann. 14-3-3SIGMA in Complex with SLP76PS376 Phosphopeptide Crystal Structure To Be Published.
Page generated: Tue Dec 15 02:57:16 2020

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