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Magnesium in PDB 6zhk: Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661

Enzymatic activity of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661

All present enzymatic activity of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661:
2.6.1.62;

Protein crystallography data

The structure of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661, PDB code: 6zhk was solved by K.M.Boyko, T.N.Nikolaeva, T.N.Stekhanova, T.V.Rakitina, E.Y.Bezsudnova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.56 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.232, 61.380, 63.069, 106.11, 93.48, 96.47
R / Rfree (%) 17.7 / 22.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661 (pdb code 6zhk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661, PDB code: 6zhk:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6zhk

Go back to Magnesium Binding Sites List in 6zhk
Magnesium binding site 1 out of 3 in the Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:18.0
occ:1.00
 O A:HOH695 2.1 16.4 1.0
O A:LEU113 2.2 15.7 1.0
O A:VAL106 2.2 15.6 1.0
O A:PRO110 2.2 15.2 1.0
OG1 A:THR109 2.6 13.3 1.0
O A:THR109 2.7 20.0 1.0
C A:THR109 3.2 17.7 1.0
C A:PRO110 3.3 18.4 1.0
C A:VAL106 3.3 15.3 1.0
C A:LEU113 3.3 15.4 1.0
CB A:THR109 3.6 15.6 1.0
CA A:VAL106 3.7 13.7 1.0
CA A:THR109 3.8 17.2 1.0
N A:LEU113 3.9 14.0 1.0
CA A:LEU113 3.9 15.0 1.0
N A:THR109 3.9 17.0 1.0
CB A:LEU113 3.9 15.3 1.0
N A:PRO110 4.0 19.0 1.0
CA A:LYS111 4.1 18.1 1.0
CG1 A:VAL106 4.1 15.3 1.0
N A:LYS111 4.1 14.9 1.0
CA A:PRO110 4.2 18.4 1.0
C A:LYS111 4.3 16.4 1.0
N A:THR114 4.5 17.8 1.0
CB A:VAL106 4.5 15.9 1.0
O A:LYS111 4.5 19.4 1.0
O A:LEU105 4.5 17.1 1.0
N A:ASP107 4.5 19.6 1.0
CG2 A:THR109 4.9 12.9 1.0
N A:HIS112 4.9 15.6 1.0
CA A:THR114 4.9 16.2 1.0
N A:VAL106 4.9 14.6 1.0
CE A:LYS111 5.0 43.8 1.0
C A:ASP107 5.0 20.2 1.0

Magnesium binding site 2 out of 3 in 6zhk

Go back to Magnesium Binding Sites List in 6zhk
Magnesium binding site 2 out of 3 in the Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:17.3
occ:1.00
 O B:HOH716 2.2 21.8 1.0
O B:VAL106 2.2 15.2 1.0
O B:LEU113 2.2 16.7 1.0
O B:PRO110 2.2 19.6 1.0
OG1 B:THR109 2.5 15.1 1.0
O B:THR109 2.8 18.7 1.0
C B:VAL106 3.2 15.6 1.0
C B:THR109 3.3 16.4 1.0
C B:PRO110 3.3 20.8 1.0
C B:LEU113 3.3 15.2 1.0
CB B:THR109 3.6 16.1 1.0
CA B:VAL106 3.6 15.2 1.0
CA B:THR109 3.8 15.9 1.0
CA B:LEU113 4.0 15.8 1.0
N B:THR109 4.0 16.1 1.0
CG1 B:VAL106 4.0 14.7 1.0
N B:PRO110 4.0 19.1 1.0
CB B:LEU113 4.0 14.2 1.0
N B:LEU113 4.0 14.8 1.0
N B:LYS111 4.2 22.4 1.0
CA B:LYS111 4.2 19.8 1.0
CA B:PRO110 4.2 20.0 1.0
CB B:VAL106 4.4 15.1 1.0
C B:LYS111 4.4 20.0 1.0
N B:ASP107 4.4 18.0 1.0
O B:LEU105 4.5 18.4 1.0
N B:THR114 4.5 16.4 1.0
O B:LYS111 4.6 18.3 1.0
N B:VAL106 4.9 16.4 1.0
CA B:THR114 4.9 17.1 1.0
CG2 B:THR109 4.9 17.2 1.0
CA B:ASP107 5.0 19.4 1.0
N B:HIS112 5.0 17.0 1.0

Magnesium binding site 3 out of 3 in 6zhk

Go back to Magnesium Binding Sites List in 6zhk
Magnesium binding site 3 out of 3 in the Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Adenosylmethionine-8-Amino-7-Oxononanoate Aminotransferase From Methanocaldococcus Jannaschii Dsm 2661 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:35.7
occ:1.00
 O B:HOH626 2.1 28.5 1.0
O B:HOH620 2.1 36.2 1.0
O B:HOH665 2.1 31.2 1.0
OE1 B:GLU375 4.1 33.4 1.0
OD2 B:ASP455 4.2 28.1 1.0
OD1 B:ASP455 4.2 27.9 1.0
O B:HOH643 4.5 37.4 1.0
CG B:ASP455 4.6 25.6 1.0
O B:HOH612 4.7 24.2 1.0
CG2 B:ILE451 4.8 17.0 1.0

Reference:

K.M.Boyko, T.N.Nikolaeva, T.N.Stekhanova, T.V.Rakitina, E.Y.Bezsudnova, V.O.Popov. Crystal Structure of Transaminase From (Balsa) To Be Published.
Page generated: Wed Oct 2 02:18:37 2024

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