Magnesium in PDB 6zia: Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Protein crystallography data
The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure, PDB code: 6zia
was solved by
P.Baath,
R.Dods,
G.Braenden,
R.Neutze,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.31 /
2.80
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
226.500,
226.500,
113.900,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16 /
15.4
|
Other elements in 6zia:
The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
(pdb code 6zia). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the
Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure, PDB code: 6zia:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
Magnesium binding site 1 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 1 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:65.9
occ:0.70
|
MG
|
L:BCB301
|
0.0
|
65.9
|
0.7
|
MG
|
L:BCB301
|
0.2
|
65.9
|
0.3
|
NA
|
L:BCB301
|
1.9
|
61.9
|
0.3
|
ND
|
L:BCB301
|
2.0
|
60.2
|
0.3
|
NA
|
L:BCB301
|
2.0
|
61.9
|
0.7
|
ND
|
L:BCB301
|
2.0
|
60.2
|
0.7
|
NB
|
L:BCB301
|
2.0
|
63.4
|
0.7
|
NC
|
L:BCB301
|
2.1
|
63.5
|
0.7
|
NB
|
L:BCB301
|
2.1
|
63.4
|
0.3
|
NE2
|
L:HIS173
|
2.1
|
66.3
|
0.7
|
NC
|
L:BCB301
|
2.2
|
63.5
|
0.3
|
NE2
|
L:HIS173
|
2.5
|
66.3
|
0.3
|
C1A
|
L:BCB301
|
2.9
|
61.9
|
0.3
|
C4A
|
L:BCB301
|
2.9
|
62.4
|
0.3
|
C4D
|
L:BCB301
|
2.9
|
60.1
|
0.3
|
C4D
|
L:BCB301
|
3.0
|
60.1
|
0.7
|
C1A
|
L:BCB301
|
3.0
|
61.9
|
0.7
|
C4A
|
L:BCB301
|
3.0
|
62.4
|
0.7
|
C1B
|
L:BCB301
|
3.1
|
63.1
|
0.7
|
C1B
|
L:BCB301
|
3.1
|
63.1
|
0.3
|
C4B
|
L:BCB301
|
3.1
|
60.5
|
0.7
|
CE1
|
L:HIS173
|
3.1
|
66.2
|
0.7
|
C1D
|
L:BCB301
|
3.1
|
64.2
|
0.7
|
C4C
|
L:BCB301
|
3.1
|
62.4
|
0.7
|
C1D
|
L:BCB301
|
3.1
|
64.2
|
0.3
|
C1C
|
L:BCB301
|
3.1
|
63.2
|
0.7
|
CD2
|
L:HIS173
|
3.1
|
64.5
|
0.7
|
C4B
|
L:BCB301
|
3.2
|
60.5
|
0.3
|
C4C
|
L:BCB301
|
3.2
|
62.4
|
0.3
|
C1C
|
L:BCB301
|
3.3
|
63.2
|
0.3
|
CHA
|
L:BCB301
|
3.3
|
62.6
|
0.3
|
CHB
|
L:BCB301
|
3.3
|
63.1
|
0.3
|
CD2
|
L:HIS173
|
3.4
|
64.5
|
0.3
|
CHB
|
L:BCB301
|
3.4
|
63.1
|
0.7
|
CBB
|
M:BCB403
|
3.4
|
63.9
|
0.7
|
CHA
|
L:BCB301
|
3.4
|
62.6
|
0.7
|
CHC
|
L:BCB301
|
3.5
|
59.2
|
0.7
|
CBB
|
M:BCB403
|
3.5
|
63.9
|
0.3
|
CE1
|
L:HIS173
|
3.5
|
66.2
|
0.3
|
CAB
|
M:BCB403
|
3.6
|
61.1
|
0.3
|
CHD
|
L:BCB301
|
3.6
|
62.0
|
0.7
|
CHC
|
L:BCB301
|
3.6
|
59.2
|
0.3
|
CAB
|
M:BCB403
|
3.6
|
61.1
|
0.7
|
OBB
|
M:BCB403
|
3.6
|
64.3
|
0.3
|
CHD
|
L:BCB301
|
3.6
|
62.0
|
0.3
|
OBB
|
M:BCB403
|
3.9
|
64.3
|
0.7
|
C2A
|
L:BCB301
|
4.2
|
61.9
|
0.3
|
C3A
|
L:BCB301
|
4.2
|
61.4
|
0.3
|
ND1
|
L:HIS173
|
4.2
|
63.2
|
0.7
|
C3D
|
L:BCB301
|
4.2
|
62.5
|
0.3
|
CD1
|
L:TRP167
|
4.2
|
64.8
|
0.3
|
C3D
|
L:BCB301
|
4.3
|
62.5
|
0.7
|
CG
|
L:HIS173
|
4.3
|
66.3
|
0.7
|
NE1
|
L:TRP167
|
4.3
|
64.9
|
0.3
|
C3B
|
M:BCB403
|
4.3
|
62.0
|
0.7
|
C2D
|
L:BCB301
|
4.3
|
62.6
|
0.3
|
CD1
|
L:TRP167
|
4.3
|
64.8
|
0.7
|
C3A
|
L:BCB301
|
4.3
|
61.4
|
0.7
|
C2D
|
L:BCB301
|
4.3
|
62.6
|
0.7
|
C2A
|
L:BCB301
|
4.3
|
61.9
|
0.7
|
NE1
|
L:TRP167
|
4.4
|
64.9
|
0.7
|
C3C
|
L:BCB301
|
4.4
|
60.8
|
0.7
|
C3B
|
L:BCB301
|
4.4
|
62.0
|
0.7
|
C2B
|
L:BCB301
|
4.4
|
62.9
|
0.7
|
C3B
|
M:BCB403
|
4.4
|
62.0
|
0.3
|
C2B
|
L:BCB301
|
4.4
|
62.9
|
0.3
|
C3C
|
L:BCB301
|
4.5
|
60.8
|
0.3
|
C3B
|
L:BCB301
|
4.5
|
62.0
|
0.3
|
C2C
|
L:BCB301
|
4.5
|
64.8
|
0.7
|
CG
|
L:HIS173
|
4.6
|
66.3
|
0.3
|
ND1
|
L:HIS173
|
4.6
|
63.2
|
0.3
|
C2C
|
L:BCB301
|
4.6
|
64.8
|
0.3
|
CBD
|
L:BCB301
|
4.7
|
63.2
|
0.3
|
CBD
|
L:BCB301
|
4.9
|
63.2
|
0.7
|
|
Magnesium binding site 2 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 2 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:65.9
occ:0.30
|
MG
|
L:BCB301
|
0.0
|
65.9
|
0.3
|
MG
|
L:BCB301
|
0.2
|
65.9
|
0.7
|
NC
|
L:BCB301
|
1.9
|
63.5
|
0.7
|
NB
|
L:BCB301
|
2.0
|
63.4
|
0.7
|
NA
|
L:BCB301
|
2.0
|
61.9
|
0.3
|
ND
|
L:BCB301
|
2.0
|
60.2
|
0.3
|
NB
|
L:BCB301
|
2.0
|
63.4
|
0.3
|
NC
|
L:BCB301
|
2.1
|
63.5
|
0.3
|
ND
|
L:BCB301
|
2.1
|
60.2
|
0.7
|
NA
|
L:BCB301
|
2.1
|
61.9
|
0.7
|
NE2
|
L:HIS173
|
2.2
|
66.3
|
0.7
|
NE2
|
L:HIS173
|
2.6
|
66.3
|
0.3
|
C4B
|
L:BCB301
|
3.0
|
60.5
|
0.7
|
C4A
|
L:BCB301
|
3.0
|
62.4
|
0.3
|
C1C
|
L:BCB301
|
3.0
|
63.2
|
0.7
|
C1A
|
L:BCB301
|
3.0
|
61.9
|
0.3
|
C4D
|
L:BCB301
|
3.0
|
60.1
|
0.3
|
C4C
|
L:BCB301
|
3.0
|
62.4
|
0.7
|
C1B
|
L:BCB301
|
3.0
|
63.1
|
0.7
|
C1B
|
L:BCB301
|
3.0
|
63.1
|
0.3
|
C4A
|
L:BCB301
|
3.1
|
62.4
|
0.7
|
C4D
|
L:BCB301
|
3.1
|
60.1
|
0.7
|
C4B
|
L:BCB301
|
3.1
|
60.5
|
0.3
|
C1D
|
L:BCB301
|
3.1
|
64.2
|
0.7
|
C4C
|
L:BCB301
|
3.1
|
62.4
|
0.3
|
C1C
|
L:BCB301
|
3.1
|
63.2
|
0.3
|
C1D
|
L:BCB301
|
3.1
|
64.2
|
0.3
|
C1A
|
L:BCB301
|
3.1
|
61.9
|
0.7
|
CE1
|
L:HIS173
|
3.2
|
66.2
|
0.7
|
CD2
|
L:HIS173
|
3.3
|
64.5
|
0.7
|
CBB
|
M:BCB403
|
3.3
|
63.9
|
0.7
|
CHC
|
L:BCB301
|
3.3
|
59.2
|
0.7
|
CHB
|
L:BCB301
|
3.4
|
63.1
|
0.3
|
CHA
|
L:BCB301
|
3.4
|
62.6
|
0.3
|
CBB
|
M:BCB403
|
3.4
|
63.9
|
0.3
|
CHB
|
L:BCB301
|
3.4
|
63.1
|
0.7
|
CAB
|
M:BCB403
|
3.4
|
61.1
|
0.3
|
OBB
|
M:BCB403
|
3.4
|
64.3
|
0.3
|
CHC
|
L:BCB301
|
3.5
|
59.2
|
0.3
|
CAB
|
M:BCB403
|
3.5
|
61.1
|
0.7
|
CD2
|
L:HIS173
|
3.5
|
64.5
|
0.3
|
CHD
|
L:BCB301
|
3.5
|
62.0
|
0.7
|
CHA
|
L:BCB301
|
3.5
|
62.6
|
0.7
|
CHD
|
L:BCB301
|
3.6
|
62.0
|
0.3
|
CE1
|
L:HIS173
|
3.6
|
66.2
|
0.3
|
OBB
|
M:BCB403
|
3.7
|
64.3
|
0.7
|
C3B
|
M:BCB403
|
4.2
|
62.0
|
0.7
|
C3C
|
L:BCB301
|
4.2
|
60.8
|
0.7
|
C3B
|
M:BCB403
|
4.3
|
62.0
|
0.3
|
CD1
|
L:TRP167
|
4.3
|
64.8
|
0.3
|
C3D
|
L:BCB301
|
4.3
|
62.5
|
0.3
|
C3B
|
L:BCB301
|
4.3
|
62.0
|
0.7
|
ND1
|
L:HIS173
|
4.3
|
63.2
|
0.7
|
C3A
|
L:BCB301
|
4.3
|
61.4
|
0.3
|
C2A
|
L:BCB301
|
4.3
|
61.9
|
0.3
|
C3C
|
L:BCB301
|
4.3
|
60.8
|
0.3
|
C2D
|
L:BCB301
|
4.3
|
62.6
|
0.3
|
C2B
|
L:BCB301
|
4.4
|
62.9
|
0.7
|
C3D
|
L:BCB301
|
4.4
|
62.5
|
0.7
|
C2D
|
L:BCB301
|
4.4
|
62.6
|
0.7
|
CD1
|
L:TRP167
|
4.4
|
64.8
|
0.7
|
NE1
|
L:TRP167
|
4.4
|
64.9
|
0.3
|
C2C
|
L:BCB301
|
4.4
|
64.8
|
0.7
|
C2B
|
L:BCB301
|
4.4
|
62.9
|
0.3
|
C3B
|
L:BCB301
|
4.4
|
62.0
|
0.3
|
CG
|
L:HIS173
|
4.4
|
66.3
|
0.7
|
C3A
|
L:BCB301
|
4.4
|
61.4
|
0.7
|
NE1
|
L:TRP167
|
4.4
|
64.9
|
0.7
|
C2A
|
L:BCB301
|
4.5
|
61.9
|
0.7
|
C2C
|
L:BCB301
|
4.5
|
64.8
|
0.3
|
CG
|
L:HIS173
|
4.7
|
66.3
|
0.3
|
ND1
|
L:HIS173
|
4.7
|
63.2
|
0.3
|
CBD
|
L:BCB301
|
4.9
|
63.2
|
0.3
|
C2B
|
M:BCB403
|
4.9
|
60.5
|
0.7
|
C4B
|
M:BCB403
|
5.0
|
59.0
|
0.7
|
C2B
|
M:BCB403
|
5.0
|
60.5
|
0.3
|
CBD
|
L:BCB301
|
5.0
|
63.2
|
0.7
|
|
Magnesium binding site 3 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 3 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg302
b:67.0
occ:0.70
|
MG
|
L:BCB302
|
0.0
|
67.0
|
0.7
|
MG
|
L:BCB302
|
0.1
|
67.0
|
0.3
|
NC
|
L:BCB302
|
2.0
|
67.7
|
0.3
|
ND
|
L:BCB302
|
2.0
|
67.8
|
0.3
|
NA
|
L:BCB302
|
2.0
|
69.5
|
0.7
|
ND
|
L:BCB302
|
2.0
|
67.8
|
0.7
|
NB
|
L:BCB302
|
2.1
|
68.1
|
0.7
|
NC
|
L:BCB302
|
2.1
|
67.7
|
0.7
|
NA
|
L:BCB302
|
2.1
|
69.5
|
0.3
|
NB
|
L:BCB302
|
2.1
|
68.1
|
0.3
|
NE2
|
L:HIS153
|
2.2
|
69.5
|
0.3
|
NE2
|
L:HIS153
|
2.2
|
69.5
|
0.7
|
C1A
|
L:BCB302
|
3.0
|
68.9
|
0.7
|
C4D
|
L:BCB302
|
3.0
|
68.5
|
0.7
|
C4D
|
L:BCB302
|
3.0
|
68.5
|
0.3
|
C4A
|
L:BCB302
|
3.0
|
67.2
|
0.7
|
C1A
|
L:BCB302
|
3.0
|
68.9
|
0.3
|
C4C
|
L:BCB302
|
3.0
|
66.8
|
0.3
|
C1C
|
L:BCB302
|
3.1
|
63.5
|
0.3
|
C4A
|
L:BCB302
|
3.1
|
67.2
|
0.3
|
C1D
|
L:BCB302
|
3.1
|
68.4
|
0.3
|
C1B
|
L:BCB302
|
3.1
|
64.1
|
0.7
|
C4B
|
L:BCB302
|
3.1
|
63.9
|
0.7
|
C4B
|
L:BCB302
|
3.1
|
63.9
|
0.3
|
CE1
|
L:HIS153
|
3.1
|
69.6
|
0.3
|
C1D
|
L:BCB302
|
3.1
|
68.4
|
0.7
|
C1B
|
L:BCB302
|
3.1
|
64.1
|
0.3
|
C1C
|
L:BCB302
|
3.1
|
63.5
|
0.7
|
C4C
|
L:BCB302
|
3.1
|
66.8
|
0.7
|
CD2
|
L:HIS153
|
3.2
|
71.1
|
0.7
|
CD2
|
L:HIS153
|
3.2
|
71.1
|
0.3
|
CE1
|
L:HIS153
|
3.2
|
69.6
|
0.7
|
CHA
|
L:BCB302
|
3.4
|
66.8
|
0.7
|
CHB
|
L:BCB302
|
3.4
|
67.1
|
0.7
|
CHA
|
L:BCB302
|
3.4
|
66.8
|
0.3
|
CHC
|
L:BCB302
|
3.4
|
63.9
|
0.3
|
CHC
|
L:BCB302
|
3.5
|
63.9
|
0.7
|
CHB
|
L:BCB302
|
3.5
|
67.1
|
0.3
|
CHD
|
L:BCB302
|
3.5
|
67.0
|
0.3
|
CHD
|
L:BCB302
|
3.6
|
67.0
|
0.7
|
CBB
|
L:BPB303
|
4.1
|
71.2
|
0.3
|
CBB
|
L:BPB303
|
4.1
|
71.2
|
0.7
|
ND1
|
L:HIS153
|
4.2
|
67.8
|
0.3
|
C3D
|
L:BCB302
|
4.3
|
69.1
|
0.3
|
C3D
|
L:BCB302
|
4.3
|
69.1
|
0.7
|
C3C
|
L:BCB302
|
4.3
|
67.6
|
0.3
|
C2D
|
L:BCB302
|
4.3
|
66.2
|
0.3
|
C2A
|
L:BCB302
|
4.3
|
69.2
|
0.7
|
C2D
|
L:BCB302
|
4.3
|
66.2
|
0.7
|
ND1
|
L:HIS153
|
4.3
|
67.8
|
0.7
|
C3A
|
L:BCB302
|
4.3
|
69.7
|
0.7
|
CG
|
L:HIS153
|
4.3
|
67.9
|
0.3
|
C3C
|
L:BCB302
|
4.4
|
67.6
|
0.7
|
CG
|
L:HIS153
|
4.4
|
67.9
|
0.7
|
C2A
|
L:BCB302
|
4.4
|
69.2
|
0.3
|
C3A
|
L:BCB302
|
4.4
|
69.7
|
0.3
|
C3B
|
L:BCB302
|
4.4
|
65.9
|
0.7
|
C3B
|
L:BCB302
|
4.4
|
65.9
|
0.3
|
C2B
|
L:BCB302
|
4.4
|
65.9
|
0.7
|
C2C
|
L:BCB302
|
4.4
|
66.5
|
0.3
|
C2B
|
L:BCB302
|
4.5
|
65.9
|
0.3
|
C2C
|
L:BCB302
|
4.5
|
66.5
|
0.7
|
CE2
|
M:TYR208
|
4.5
|
68.0
|
0.7
|
CE2
|
M:TYR208
|
4.6
|
68.0
|
0.3
|
CBA
|
L:BCB302
|
4.8
|
68.0
|
0.3
|
CBD
|
L:BCB302
|
4.8
|
67.7
|
0.7
|
CBD
|
L:BCB302
|
4.9
|
67.7
|
0.3
|
CBA
|
L:BCB302
|
4.9
|
68.0
|
0.7
|
CD2
|
L:LEU154
|
4.9
|
70.4
|
0.7
|
CD2
|
L:LEU154
|
4.9
|
70.4
|
0.3
|
|
Magnesium binding site 4 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 4 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg302
b:67.0
occ:0.30
|
MG
|
L:BCB302
|
0.0
|
67.0
|
0.3
|
MG
|
L:BCB302
|
0.1
|
67.0
|
0.7
|
NA
|
L:BCB302
|
1.9
|
69.5
|
0.7
|
NA
|
L:BCB302
|
2.0
|
69.5
|
0.3
|
NB
|
L:BCB302
|
2.0
|
68.1
|
0.7
|
ND
|
L:BCB302
|
2.0
|
67.8
|
0.3
|
NB
|
L:BCB302
|
2.1
|
68.1
|
0.3
|
NC
|
L:BCB302
|
2.1
|
67.7
|
0.3
|
ND
|
L:BCB302
|
2.1
|
67.8
|
0.7
|
NC
|
L:BCB302
|
2.1
|
67.7
|
0.7
|
NE2
|
L:HIS153
|
2.2
|
69.5
|
0.3
|
NE2
|
L:HIS153
|
2.2
|
69.5
|
0.7
|
C1A
|
L:BCB302
|
2.9
|
68.9
|
0.7
|
C4A
|
L:BCB302
|
2.9
|
67.2
|
0.7
|
C1A
|
L:BCB302
|
3.0
|
68.9
|
0.3
|
C4D
|
L:BCB302
|
3.0
|
68.5
|
0.7
|
C4D
|
L:BCB302
|
3.0
|
68.5
|
0.3
|
C4A
|
L:BCB302
|
3.0
|
67.2
|
0.3
|
C1B
|
L:BCB302
|
3.0
|
64.1
|
0.7
|
CE1
|
L:HIS153
|
3.1
|
69.6
|
0.3
|
C1B
|
L:BCB302
|
3.1
|
64.1
|
0.3
|
C4B
|
L:BCB302
|
3.1
|
63.9
|
0.3
|
C4B
|
L:BCB302
|
3.1
|
63.9
|
0.7
|
C4C
|
L:BCB302
|
3.1
|
66.8
|
0.3
|
C1C
|
L:BCB302
|
3.1
|
63.5
|
0.3
|
C1D
|
L:BCB302
|
3.1
|
68.4
|
0.3
|
CE1
|
L:HIS153
|
3.2
|
69.6
|
0.7
|
C1D
|
L:BCB302
|
3.2
|
68.4
|
0.7
|
C1C
|
L:BCB302
|
3.2
|
63.5
|
0.7
|
CD2
|
L:HIS153
|
3.2
|
71.1
|
0.7
|
CD2
|
L:HIS153
|
3.2
|
71.1
|
0.3
|
C4C
|
L:BCB302
|
3.2
|
66.8
|
0.7
|
CHB
|
L:BCB302
|
3.3
|
67.1
|
0.7
|
CHA
|
L:BCB302
|
3.4
|
66.8
|
0.7
|
CHA
|
L:BCB302
|
3.4
|
66.8
|
0.3
|
CHB
|
L:BCB302
|
3.4
|
67.1
|
0.3
|
CHC
|
L:BCB302
|
3.5
|
63.9
|
0.3
|
CHC
|
L:BCB302
|
3.5
|
63.9
|
0.7
|
CHD
|
L:BCB302
|
3.6
|
67.0
|
0.3
|
CHD
|
L:BCB302
|
3.7
|
67.0
|
0.7
|
CBB
|
L:BPB303
|
4.1
|
71.2
|
0.3
|
CBB
|
L:BPB303
|
4.1
|
71.2
|
0.7
|
ND1
|
L:HIS153
|
4.2
|
67.8
|
0.3
|
C2A
|
L:BCB302
|
4.3
|
69.2
|
0.7
|
C3A
|
L:BCB302
|
4.3
|
69.7
|
0.7
|
C3D
|
L:BCB302
|
4.3
|
69.1
|
0.3
|
C3D
|
L:BCB302
|
4.3
|
69.1
|
0.7
|
ND1
|
L:HIS153
|
4.3
|
67.8
|
0.7
|
C2A
|
L:BCB302
|
4.3
|
69.2
|
0.3
|
CG
|
L:HIS153
|
4.3
|
67.9
|
0.3
|
C3A
|
L:BCB302
|
4.3
|
69.7
|
0.3
|
CG
|
L:HIS153
|
4.3
|
67.9
|
0.7
|
C3C
|
L:BCB302
|
4.3
|
67.6
|
0.3
|
C2D
|
L:BCB302
|
4.3
|
66.2
|
0.3
|
C2D
|
L:BCB302
|
4.4
|
66.2
|
0.7
|
C2B
|
L:BCB302
|
4.4
|
65.9
|
0.7
|
C3B
|
L:BCB302
|
4.4
|
65.9
|
0.7
|
C3B
|
L:BCB302
|
4.4
|
65.9
|
0.3
|
C2B
|
L:BCB302
|
4.4
|
65.9
|
0.3
|
C3C
|
L:BCB302
|
4.4
|
67.6
|
0.7
|
C2C
|
L:BCB302
|
4.5
|
66.5
|
0.3
|
C2C
|
L:BCB302
|
4.6
|
66.5
|
0.7
|
CE2
|
M:TYR208
|
4.6
|
68.0
|
0.7
|
CE2
|
M:TYR208
|
4.6
|
68.0
|
0.3
|
CBA
|
L:BCB302
|
4.8
|
68.0
|
0.3
|
CBD
|
L:BCB302
|
4.8
|
67.7
|
0.7
|
CBA
|
L:BCB302
|
4.8
|
68.0
|
0.7
|
CBD
|
L:BCB302
|
4.9
|
67.7
|
0.3
|
CD2
|
L:LEU154
|
4.9
|
70.4
|
0.7
|
CD2
|
L:LEU154
|
4.9
|
70.4
|
0.3
|
CMA
|
L:BCB302
|
5.0
|
69.4
|
0.7
|
|
Magnesium binding site 5 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 5 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg304
b:72.5
occ:1.00
|
MG
|
L:BCB304
|
0.0
|
72.5
|
1.0
|
NA
|
L:BCB304
|
2.0
|
72.5
|
1.0
|
ND
|
L:BCB304
|
2.0
|
68.5
|
1.0
|
NB
|
L:BCB304
|
2.0
|
73.6
|
1.0
|
NC
|
L:BCB304
|
2.1
|
75.3
|
1.0
|
NE2
|
M:HIS180
|
2.1
|
69.9
|
1.0
|
C1A
|
L:BCB304
|
3.0
|
68.7
|
1.0
|
C4A
|
L:BCB304
|
3.0
|
73.0
|
1.0
|
C4D
|
L:BCB304
|
3.0
|
67.4
|
1.0
|
C1B
|
L:BCB304
|
3.1
|
73.1
|
1.0
|
C4B
|
L:BCB304
|
3.1
|
72.8
|
1.0
|
CE1
|
M:HIS180
|
3.1
|
71.3
|
1.0
|
C4C
|
L:BCB304
|
3.1
|
70.5
|
1.0
|
C1D
|
L:BCB304
|
3.1
|
73.0
|
1.0
|
C1C
|
L:BCB304
|
3.1
|
68.1
|
1.0
|
CD2
|
M:HIS180
|
3.2
|
70.7
|
1.0
|
CHB
|
L:BCB304
|
3.4
|
71.0
|
1.0
|
CHA
|
L:BCB304
|
3.4
|
69.3
|
1.0
|
CHC
|
L:BCB304
|
3.5
|
72.7
|
1.0
|
CHD
|
L:BCB304
|
3.6
|
71.2
|
1.0
|
ND1
|
M:HIS180
|
4.2
|
69.1
|
1.0
|
C3D
|
L:BCB304
|
4.3
|
69.8
|
1.0
|
CG
|
M:HIS180
|
4.3
|
70.1
|
1.0
|
C2A
|
L:BCB304
|
4.3
|
71.5
|
1.0
|
C3C
|
L:BCB304
|
4.3
|
69.5
|
1.0
|
C3A
|
L:BCB304
|
4.3
|
71.7
|
1.0
|
C2D
|
L:BCB304
|
4.4
|
71.0
|
1.0
|
C3B
|
L:BCB304
|
4.4
|
75.5
|
1.0
|
OBB
|
L:BPB305
|
4.4
|
89.5
|
1.0
|
C2B
|
L:BCB304
|
4.4
|
73.4
|
1.0
|
C2C
|
L:BCB304
|
4.5
|
67.1
|
1.0
|
CE2
|
L:PHE181
|
4.8
|
71.5
|
1.0
|
CBA
|
L:BCB304
|
4.8
|
80.2
|
1.0
|
CBD
|
L:BCB304
|
4.9
|
71.7
|
1.0
|
|
Magnesium binding site 6 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 6 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:66.1
occ:0.70
|
MG
|
M:BCB403
|
0.0
|
66.1
|
0.7
|
MG
|
M:BCB403
|
0.2
|
66.1
|
0.3
|
NB
|
M:BCB403
|
1.9
|
60.1
|
0.3
|
NC
|
M:BCB403
|
2.0
|
62.8
|
0.3
|
NA
|
M:BCB403
|
2.0
|
66.9
|
0.7
|
ND
|
M:BCB403
|
2.0
|
62.5
|
0.7
|
NC
|
M:BCB403
|
2.0
|
62.8
|
0.7
|
NB
|
M:BCB403
|
2.0
|
60.1
|
0.7
|
NA
|
M:BCB403
|
2.1
|
66.9
|
0.3
|
NE2
|
M:HIS200
|
2.1
|
69.1
|
0.7
|
NE2
|
M:HIS200
|
2.1
|
69.1
|
0.3
|
ND
|
M:BCB403
|
2.2
|
62.5
|
0.3
|
C4B
|
M:BCB403
|
2.9
|
59.0
|
0.3
|
C1B
|
M:BCB403
|
2.9
|
59.1
|
0.3
|
CE1
|
M:HIS200
|
3.0
|
71.8
|
0.7
|
C4D
|
M:BCB403
|
3.0
|
64.5
|
0.7
|
C1A
|
M:BCB403
|
3.0
|
65.7
|
0.7
|
C4A
|
M:BCB403
|
3.0
|
63.6
|
0.3
|
C1C
|
M:BCB403
|
3.0
|
59.7
|
0.3
|
C4A
|
M:BCB403
|
3.0
|
63.6
|
0.7
|
CE1
|
M:HIS200
|
3.0
|
71.8
|
0.3
|
C1B
|
M:BCB403
|
3.1
|
59.1
|
0.7
|
C4B
|
M:BCB403
|
3.1
|
59.0
|
0.7
|
C1A
|
M:BCB403
|
3.1
|
65.7
|
0.3
|
C1C
|
M:BCB403
|
3.1
|
59.7
|
0.7
|
C4C
|
M:BCB403
|
3.1
|
62.6
|
0.7
|
C1D
|
M:BCB403
|
3.1
|
67.9
|
0.7
|
C4C
|
M:BCB403
|
3.1
|
62.6
|
0.3
|
C4D
|
M:BCB403
|
3.2
|
64.5
|
0.3
|
CD2
|
M:HIS200
|
3.2
|
68.4
|
0.7
|
CD2
|
M:HIS200
|
3.2
|
68.4
|
0.3
|
CHC
|
M:BCB403
|
3.2
|
59.3
|
0.3
|
C1D
|
M:BCB403
|
3.3
|
67.9
|
0.3
|
CHB
|
M:BCB403
|
3.3
|
60.8
|
0.3
|
CBB
|
L:BCB301
|
3.3
|
64.6
|
0.3
|
CHA
|
M:BCB403
|
3.4
|
64.9
|
0.7
|
CHB
|
M:BCB403
|
3.4
|
60.8
|
0.7
|
CBB
|
L:BCB301
|
3.4
|
64.6
|
0.7
|
CHC
|
M:BCB403
|
3.4
|
59.3
|
0.7
|
CHA
|
M:BCB403
|
3.5
|
64.9
|
0.3
|
CAB
|
L:BCB301
|
3.5
|
62.7
|
0.3
|
CHD
|
M:BCB403
|
3.6
|
66.1
|
0.7
|
CAB
|
L:BCB301
|
3.6
|
62.7
|
0.7
|
CHD
|
M:BCB403
|
3.7
|
66.1
|
0.3
|
OBB
|
L:BCB301
|
3.8
|
66.1
|
0.3
|
OBB
|
L:BCB301
|
3.8
|
66.1
|
0.7
|
ND1
|
M:HIS200
|
4.1
|
64.9
|
0.7
|
ND1
|
M:HIS200
|
4.2
|
64.9
|
0.3
|
C3B
|
M:BCB403
|
4.2
|
62.0
|
0.3
|
C2B
|
M:BCB403
|
4.2
|
60.5
|
0.3
|
C3B
|
L:BCB301
|
4.3
|
62.0
|
0.3
|
C3D
|
M:BCB403
|
4.3
|
65.8
|
0.7
|
CG
|
M:HIS200
|
4.3
|
65.4
|
0.7
|
CG
|
M:HIS200
|
4.3
|
65.4
|
0.3
|
C3C
|
M:BCB403
|
4.3
|
64.8
|
0.7
|
C2D
|
M:BCB403
|
4.3
|
65.2
|
0.7
|
C2A
|
M:BCB403
|
4.3
|
68.4
|
0.7
|
C3C
|
M:BCB403
|
4.3
|
64.8
|
0.3
|
C3B
|
L:BCB301
|
4.3
|
62.0
|
0.7
|
C3A
|
M:BCB403
|
4.3
|
67.1
|
0.3
|
C3A
|
M:BCB403
|
4.4
|
67.1
|
0.7
|
C3B
|
M:BCB403
|
4.4
|
62.0
|
0.7
|
C2B
|
M:BCB403
|
4.4
|
60.5
|
0.7
|
C2C
|
M:BCB403
|
4.4
|
64.7
|
0.3
|
C2A
|
M:BCB403
|
4.4
|
68.4
|
0.3
|
C2C
|
M:BCB403
|
4.4
|
64.7
|
0.7
|
C3D
|
M:BCB403
|
4.5
|
65.8
|
0.3
|
C2D
|
M:BCB403
|
4.5
|
65.2
|
0.3
|
CBD
|
M:BCB403
|
4.8
|
69.7
|
0.7
|
CMC
|
M:BCB403
|
4.8
|
66.9
|
0.7
|
CD1
|
M:ILE204
|
4.8
|
67.8
|
0.3
|
CD1
|
M:ILE204
|
4.9
|
67.8
|
0.7
|
CMC
|
M:BCB403
|
5.0
|
66.9
|
0.3
|
C4B
|
L:BCB301
|
5.0
|
60.5
|
0.3
|
CBD
|
M:BCB403
|
5.0
|
69.7
|
0.3
|
|
Magnesium binding site 7 out
of 7 in 6zia
Go back to
Magnesium Binding Sites List in 6zia
Magnesium binding site 7 out
of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 8 Us Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:66.1
occ:0.30
|
MG
|
M:BCB403
|
0.0
|
66.1
|
0.3
|
MG
|
M:BCB403
|
0.2
|
66.1
|
0.7
|
ND
|
M:BCB403
|
1.8
|
62.5
|
0.7
|
NA
|
M:BCB403
|
2.0
|
66.9
|
0.7
|
NA
|
M:BCB403
|
2.0
|
66.9
|
0.3
|
ND
|
M:BCB403
|
2.0
|
62.5
|
0.3
|
NC
|
M:BCB403
|
2.0
|
62.8
|
0.3
|
NB
|
M:BCB403
|
2.1
|
60.1
|
0.3
|
NC
|
M:BCB403
|
2.1
|
62.8
|
0.7
|
NE2
|
M:HIS200
|
2.2
|
69.1
|
0.7
|
NB
|
M:BCB403
|
2.2
|
60.1
|
0.7
|
NE2
|
M:HIS200
|
2.3
|
69.1
|
0.3
|
C4D
|
M:BCB403
|
2.8
|
64.5
|
0.7
|
C1A
|
M:BCB403
|
2.9
|
65.7
|
0.7
|
C1D
|
M:BCB403
|
2.9
|
67.9
|
0.7
|
C1A
|
M:BCB403
|
3.0
|
65.7
|
0.3
|
C4A
|
M:BCB403
|
3.0
|
63.6
|
0.3
|
C4D
|
M:BCB403
|
3.0
|
64.5
|
0.3
|
C4A
|
M:BCB403
|
3.0
|
63.6
|
0.7
|
C1B
|
M:BCB403
|
3.1
|
59.1
|
0.3
|
C4C
|
M:BCB403
|
3.1
|
62.6
|
0.7
|
C4B
|
M:BCB403
|
3.1
|
59.0
|
0.3
|
C1C
|
M:BCB403
|
3.1
|
59.7
|
0.3
|
C4C
|
M:BCB403
|
3.1
|
62.6
|
0.3
|
C1D
|
M:BCB403
|
3.1
|
67.9
|
0.3
|
CE1
|
M:HIS200
|
3.1
|
71.8
|
0.7
|
C1C
|
M:BCB403
|
3.2
|
59.7
|
0.7
|
C1B
|
M:BCB403
|
3.2
|
59.1
|
0.7
|
CHA
|
M:BCB403
|
3.2
|
64.9
|
0.7
|
CE1
|
M:HIS200
|
3.2
|
71.8
|
0.3
|
CBB
|
L:BCB301
|
3.2
|
64.6
|
0.3
|
CD2
|
M:HIS200
|
3.3
|
68.4
|
0.7
|
C4B
|
M:BCB403
|
3.3
|
59.0
|
0.7
|
CD2
|
M:HIS200
|
3.3
|
68.4
|
0.3
|
CBB
|
L:BCB301
|
3.3
|
64.6
|
0.7
|
CHA
|
M:BCB403
|
3.4
|
64.9
|
0.3
|
CHB
|
M:BCB403
|
3.4
|
60.8
|
0.3
|
CHC
|
M:BCB403
|
3.4
|
59.3
|
0.3
|
CHD
|
M:BCB403
|
3.5
|
66.1
|
0.7
|
CHB
|
M:BCB403
|
3.5
|
60.8
|
0.7
|
CAB
|
L:BCB301
|
3.5
|
62.7
|
0.3
|
CAB
|
L:BCB301
|
3.6
|
62.7
|
0.7
|
CHD
|
M:BCB403
|
3.6
|
66.1
|
0.3
|
CHC
|
M:BCB403
|
3.6
|
59.3
|
0.7
|
OBB
|
L:BCB301
|
3.7
|
66.1
|
0.3
|
OBB
|
L:BCB301
|
3.8
|
66.1
|
0.7
|
C3D
|
M:BCB403
|
4.1
|
65.8
|
0.7
|
C2D
|
M:BCB403
|
4.1
|
65.2
|
0.7
|
C2A
|
M:BCB403
|
4.3
|
68.4
|
0.7
|
C3B
|
L:BCB301
|
4.3
|
62.0
|
0.3
|
C3D
|
M:BCB403
|
4.3
|
65.8
|
0.3
|
ND1
|
M:HIS200
|
4.3
|
64.9
|
0.7
|
C3A
|
M:BCB403
|
4.3
|
67.1
|
0.3
|
C3A
|
M:BCB403
|
4.3
|
67.1
|
0.7
|
C3C
|
M:BCB403
|
4.3
|
64.8
|
0.7
|
C2A
|
M:BCB403
|
4.3
|
68.4
|
0.3
|
C2D
|
M:BCB403
|
4.3
|
65.2
|
0.3
|
C3C
|
M:BCB403
|
4.3
|
64.8
|
0.3
|
ND1
|
M:HIS200
|
4.4
|
64.9
|
0.3
|
C3B
|
L:BCB301
|
4.4
|
62.0
|
0.7
|
CG
|
M:HIS200
|
4.4
|
65.4
|
0.7
|
C3B
|
M:BCB403
|
4.4
|
62.0
|
0.3
|
C2B
|
M:BCB403
|
4.4
|
60.5
|
0.3
|
CG
|
M:HIS200
|
4.4
|
65.4
|
0.3
|
C2C
|
M:BCB403
|
4.5
|
64.7
|
0.3
|
C2C
|
M:BCB403
|
4.5
|
64.7
|
0.7
|
C2B
|
M:BCB403
|
4.6
|
60.5
|
0.7
|
C3B
|
M:BCB403
|
4.6
|
62.0
|
0.7
|
CBD
|
M:BCB403
|
4.6
|
69.7
|
0.7
|
CBD
|
M:BCB403
|
4.8
|
69.7
|
0.3
|
CMC
|
M:BCB403
|
4.9
|
66.9
|
0.7
|
CAD
|
M:BCB403
|
5.0
|
66.1
|
0.7
|
CD2
|
M:PHE194
|
5.0
|
68.2
|
0.3
|
|
Reference:
R.Dods,
P.Baath,
D.Morozov,
V.A.Gagner,
A.Arnlund,
H.L.Luk,
J.Kuebel,
M.Maj,
A.Vallejos,
C.Wickstrand,
R.Bosman,
K.R.Beyerlein,
G.Nelson,
M.Liang,
D.Milathianaki,
J.Robinson,
R.Harimoorthy,
P.Berntsen,
E.Malmerberg,
L.Johansson,
R.Andersson,
S.Carbajo,
E.Claesson,
C.E.Conrad,
P.Dahl,
G.Hammarin,
M.S.Hunter,
C.Li,
S.Lisova,
A.Royant,
C.Safari,
A.Sharma,
G.J.Williams,
O.Yefanov,
S.Westenhoff,
J.Davidsson,
D.P.Deponte,
S.Boutet,
A.Barty,
G.Katona,
G.Groenhof,
G.Braenden,
R.Neutze.
Ultrafast Structural Changes Within A Photosynthetic Reaction Centre Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-020-3000-7
Page generated: Wed Oct 2 02:20:46 2024
|