Atomistry » Magnesium » PDB 6z9h-6zii » 6zid
Atomistry »
  Magnesium »
    PDB 6z9h-6zii »
      6zid »

Magnesium in PDB 6zid: Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure

Protein crystallography data

The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure, PDB code: 6zid was solved by P.Baath, R.Dods, G.Braenden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.31 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 226.500, 226.500, 113.900, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.3

Other elements in 6zid:

The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure (pdb code 6zid). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure, PDB code: 6zid:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 1 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg301

b:74.8
occ:0.70
MG L:BCB301 0.0 74.8 0.7
MG L:BCB301 0.2 74.8 0.3
NA L:BCB301 1.9 70.7 0.3
NA L:BCB301 2.0 70.7 0.7
ND L:BCB301 2.0 69.0 0.7
NB L:BCB301 2.0 72.3 0.3
NB L:BCB301 2.0 72.3 0.7
NC L:BCB301 2.1 72.3 0.7
ND L:BCB301 2.1 69.0 0.3
NE2 L:HIS173 2.1 74.6 0.7
NC L:BCB301 2.2 72.3 0.3
NE2 L:HIS173 2.4 74.6 0.3
C4A L:BCB301 2.8 71.2 0.3
C1A L:BCB301 2.8 70.7 0.3
C1B L:BCB301 3.0 72.0 0.3
C4D L:BCB301 3.0 68.9 0.3
C4D L:BCB301 3.0 68.9 0.7
C1A L:BCB301 3.0 70.7 0.7
C4A L:BCB301 3.0 71.2 0.7
CE1 L:HIS173 3.0 74.5 0.7
C1B L:BCB301 3.1 72.0 0.7
C4B L:BCB301 3.1 69.3 0.7
C1D L:BCB301 3.1 73.0 0.7
C4C L:BCB301 3.1 71.3 0.7
C4B L:BCB301 3.1 69.3 0.3
C1C L:BCB301 3.1 72.0 0.7
CD2 L:HIS173 3.2 72.8 0.7
C1D L:BCB301 3.2 73.0 0.3
CHB L:BCB301 3.2 72.0 0.3
C1C L:BCB301 3.3 72.0 0.3
C4C L:BCB301 3.3 71.3 0.3
CD2 L:HIS173 3.3 72.8 0.3
CHA L:BCB301 3.3 71.4 0.3
CHB L:BCB301 3.4 72.0 0.7
CBB M:BCB403 3.4 72.2 0.7
CHA L:BCB301 3.4 71.4 0.7
CE1 L:HIS173 3.4 74.5 0.3
CHC L:BCB301 3.5 68.0 0.7
CAB M:BCB403 3.5 69.5 0.3
CHC L:BCB301 3.5 68.0 0.3
OBB M:BCB403 3.6 72.7 0.3
CBB M:BCB403 3.6 72.2 0.3
CHD L:BCB301 3.6 70.8 0.7
CAB M:BCB403 3.6 69.5 0.7
CHD L:BCB301 3.7 70.8 0.3
OBB M:BCB403 3.9 72.7 0.7
C2A L:BCB301 4.2 70.7 0.3
C3A L:BCB301 4.2 70.3 0.3
ND1 L:HIS173 4.2 71.5 0.7
C3B M:BCB403 4.3 70.4 0.3
CD1 L:TRP167 4.3 73.2 0.3
CG L:HIS173 4.3 74.6 0.7
C3D L:BCB301 4.3 71.3 0.7
C3D L:BCB301 4.3 71.3 0.3
C3B M:BCB403 4.3 70.4 0.7
NE1 L:TRP167 4.3 73.3 0.3
C3A L:BCB301 4.3 70.3 0.7
C2D L:BCB301 4.3 71.5 0.7
C2A L:BCB301 4.3 70.7 0.7
C2B L:BCB301 4.3 71.8 0.3
CD1 L:TRP167 4.3 73.2 0.7
C3C L:BCB301 4.4 69.7 0.7
C3B L:BCB301 4.4 70.9 0.7
C2B L:BCB301 4.4 71.8 0.7
C3B L:BCB301 4.4 70.9 0.3
NE1 L:TRP167 4.4 73.3 0.7
C2D L:BCB301 4.4 71.5 0.3
CG L:HIS173 4.4 74.6 0.3
ND1 L:HIS173 4.5 71.5 0.3
C3C L:BCB301 4.5 69.7 0.3
C2C L:BCB301 4.5 73.7 0.7
C2C L:BCB301 4.7 73.7 0.3
CBD L:BCB301 4.8 72.1 0.3
CBD L:BCB301 4.9 72.1 0.7
C2B M:BCB403 4.9 68.8 0.3

Magnesium binding site 2 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 2 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg301

b:74.8
occ:0.30
MG L:BCB301 0.0 74.8 0.3
MG L:BCB301 0.2 74.8 0.7
NC L:BCB301 1.9 72.3 0.7
ND L:BCB301 2.0 69.0 0.7
NA L:BCB301 2.0 70.7 0.3
ND L:BCB301 2.0 69.0 0.3
NB L:BCB301 2.0 72.3 0.3
NC L:BCB301 2.1 72.3 0.3
NB L:BCB301 2.1 72.3 0.7
NA L:BCB301 2.2 70.7 0.7
NE2 L:HIS173 2.3 74.6 0.7
NE2 L:HIS173 2.6 74.6 0.3
C4C L:BCB301 2.9 71.3 0.7
C1C L:BCB301 3.0 72.0 0.7
C4A L:BCB301 3.0 71.2 0.3
C1A L:BCB301 3.0 70.7 0.3
C4D L:BCB301 3.0 68.9 0.3
C1D L:BCB301 3.0 73.0 0.7
C4D L:BCB301 3.0 68.9 0.7
C1B L:BCB301 3.1 72.0 0.3
C4B L:BCB301 3.1 69.3 0.7
C4B L:BCB301 3.1 69.3 0.3
C1C L:BCB301 3.1 72.0 0.3
C4C L:BCB301 3.1 71.3 0.3
C1D L:BCB301 3.1 73.0 0.3
C1B L:BCB301 3.1 72.0 0.7
C1A L:BCB301 3.1 70.7 0.7
CE1 L:HIS173 3.2 74.5 0.7
C4A L:BCB301 3.2 71.2 0.7
CD2 L:HIS173 3.3 72.8 0.7
CBB M:BCB403 3.3 72.2 0.7
CHC L:BCB301 3.4 68.0 0.7
CHB L:BCB301 3.4 72.0 0.3
OBB M:BCB403 3.4 72.7 0.3
CHA L:BCB301 3.4 71.4 0.3
CAB M:BCB403 3.4 69.5 0.3
CHD L:BCB301 3.4 70.8 0.7
CHC L:BCB301 3.5 68.0 0.3
CD2 L:HIS173 3.5 72.8 0.3
CBB M:BCB403 3.5 72.2 0.3
CAB M:BCB403 3.5 69.5 0.7
CHA L:BCB301 3.5 71.4 0.7
CE1 L:HIS173 3.5 74.5 0.3
CHB L:BCB301 3.5 72.0 0.7
CHD L:BCB301 3.6 70.8 0.3
OBB M:BCB403 3.7 72.7 0.7
C3B M:BCB403 4.2 70.4 0.3
C3C L:BCB301 4.2 69.7 0.7
C3B M:BCB403 4.2 70.4 0.7
CD1 L:TRP167 4.3 73.2 0.3
C2D L:BCB301 4.3 71.5 0.7
C3D L:BCB301 4.3 71.3 0.7
C3D L:BCB301 4.3 71.3 0.3
ND1 L:HIS173 4.3 71.5 0.7
C3A L:BCB301 4.3 70.3 0.3
C2A L:BCB301 4.3 70.7 0.3
C3C L:BCB301 4.3 69.7 0.3
C2D L:BCB301 4.3 71.5 0.3
CD1 L:TRP167 4.3 73.2 0.7
C2C L:BCB301 4.4 73.7 0.7
NE1 L:TRP167 4.4 73.3 0.3
C3B L:BCB301 4.4 70.9 0.7
C3B L:BCB301 4.4 70.9 0.3
C2B L:BCB301 4.4 71.8 0.3
CG L:HIS173 4.4 74.6 0.7
NE1 L:TRP167 4.4 73.3 0.7
C2B L:BCB301 4.4 71.8 0.7
C3A L:BCB301 4.5 70.3 0.7
C2C L:BCB301 4.5 73.7 0.3
C2A L:BCB301 4.5 70.7 0.7
ND1 L:HIS173 4.6 71.5 0.3
CG L:HIS173 4.6 74.6 0.3
CBD L:BCB301 4.9 72.1 0.3
C2B M:BCB403 4.9 68.8 0.3
CBD L:BCB301 4.9 72.1 0.7
C4B M:BCB403 5.0 67.4 0.3
C2B M:BCB403 5.0 68.8 0.7
C4B M:BCB403 5.0 67.4 0.7

Magnesium binding site 3 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 3 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:76.1
occ:0.70
MG L:BCB302 0.0 76.1 0.7
MG L:BCB302 0.1 76.1 0.3
ND L:BCB302 1.9 76.9 0.3
NA L:BCB302 2.0 78.5 0.7
NC L:BCB302 2.0 76.8 0.3
NA L:BCB302 2.0 78.5 0.3
ND L:BCB302 2.0 76.9 0.7
NB L:BCB302 2.1 77.1 0.7
NC L:BCB302 2.1 76.8 0.7
NB L:BCB302 2.2 77.1 0.3
NE2 L:HIS153 2.2 78.6 0.3
NE2 L:HIS153 2.3 78.6 0.7
C4D L:BCB302 2.9 77.6 0.3
C1A L:BCB302 3.0 78.0 0.3
C1A L:BCB302 3.0 78.0 0.7
C4D L:BCB302 3.0 77.6 0.7
C1D L:BCB302 3.0 77.4 0.3
C4A L:BCB302 3.0 76.3 0.7
C4C L:BCB302 3.0 75.8 0.3
C4A L:BCB302 3.1 76.3 0.3
C1B L:BCB302 3.1 73.2 0.7
C4B L:BCB302 3.1 73.0 0.7
C1D L:BCB302 3.1 77.4 0.7
C1C L:BCB302 3.1 72.6 0.7
C4C L:BCB302 3.1 75.8 0.7
C1C L:BCB302 3.1 72.6 0.3
CE1 L:HIS153 3.2 78.7 0.3
C1B L:BCB302 3.2 73.2 0.3
C4B L:BCB302 3.2 73.0 0.3
CE1 L:HIS153 3.2 78.7 0.7
CD2 L:HIS153 3.2 80.2 0.3
CD2 L:HIS153 3.3 80.2 0.7
CHA L:BCB302 3.3 75.8 0.3
CHA L:BCB302 3.4 75.8 0.7
CHB L:BCB302 3.4 76.2 0.7
CHC L:BCB302 3.5 72.9 0.7
CHD L:BCB302 3.5 76.0 0.3
CHB L:BCB302 3.5 76.2 0.3
CHC L:BCB302 3.5 72.9 0.3
CHD L:BCB302 3.6 76.0 0.7
CBB L:BPB303 4.1 79.8 0.7
C3D L:BCB302 4.2 78.2 0.3
C2D L:BCB302 4.2 75.3 0.3
CBB L:BPB303 4.2 79.8 0.3
C3D L:BCB302 4.3 78.2 0.7
C3C L:BCB302 4.3 76.6 0.3
C2A L:BCB302 4.3 78.3 0.7
ND1 L:HIS153 4.3 76.9 0.3
C2A L:BCB302 4.3 78.3 0.3
C2D L:BCB302 4.3 75.3 0.7
C3A L:BCB302 4.3 78.7 0.7
C3C L:BCB302 4.4 76.6 0.7
ND1 L:HIS153 4.4 76.9 0.7
C3A L:BCB302 4.4 78.7 0.3
CG L:HIS153 4.4 77.0 0.3
C3B L:BCB302 4.4 74.9 0.7
CG L:HIS153 4.4 77.0 0.7
CE2 M:TYR208 4.4 76.6 0.3
C2B L:BCB302 4.4 75.0 0.7
CE2 M:TYR208 4.5 76.6 0.7
C2C L:BCB302 4.5 75.6 0.3
C2C L:BCB302 4.5 75.6 0.7
C3B L:BCB302 4.5 74.9 0.3
C2B L:BCB302 4.5 75.0 0.3
CBD L:BCB302 4.8 76.7 0.3
CBA L:BCB302 4.8 77.0 0.3
CBD L:BCB302 4.8 76.7 0.7
CD2 L:LEU154 4.9 78.9 0.7
CBA L:BCB302 4.9 77.0 0.7

Magnesium binding site 4 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 4 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:76.1
occ:0.30
MG L:BCB302 0.0 76.1 0.3
MG L:BCB302 0.1 76.1 0.7
NB L:BCB302 2.0 77.1 0.7
NA L:BCB302 2.0 78.5 0.7
NA L:BCB302 2.0 78.5 0.3
ND L:BCB302 2.0 76.9 0.3
NB L:BCB302 2.1 77.1 0.3
NC L:BCB302 2.1 76.8 0.3
NC L:BCB302 2.1 76.8 0.7
ND L:BCB302 2.2 76.9 0.7
NE2 L:HIS153 2.2 78.6 0.3
NE2 L:HIS153 2.2 78.6 0.7
C4A L:BCB302 2.9 76.3 0.7
C1B L:BCB302 3.0 73.2 0.7
C1A L:BCB302 3.0 78.0 0.3
C1A L:BCB302 3.0 78.0 0.7
C4A L:BCB302 3.0 76.3 0.3
C4D L:BCB302 3.0 77.6 0.3
C4B L:BCB302 3.0 73.0 0.7
C1B L:BCB302 3.1 73.2 0.3
C4D L:BCB302 3.1 77.6 0.7
C4B L:BCB302 3.1 73.0 0.3
C4C L:BCB302 3.1 75.8 0.3
C1D L:BCB302 3.1 77.4 0.3
C1C L:BCB302 3.1 72.6 0.7
C1C L:BCB302 3.1 72.6 0.3
CE1 L:HIS153 3.1 78.7 0.3
C4C L:BCB302 3.2 75.8 0.7
CD2 L:HIS153 3.2 80.2 0.3
CE1 L:HIS153 3.2 78.7 0.7
CD2 L:HIS153 3.2 80.2 0.7
C1D L:BCB302 3.2 77.4 0.7
CHB L:BCB302 3.3 76.2 0.7
CHA L:BCB302 3.4 75.8 0.3
CHB L:BCB302 3.4 76.2 0.3
CHC L:BCB302 3.4 72.9 0.7
CHA L:BCB302 3.4 75.8 0.7
CHC L:BCB302 3.5 72.9 0.3
CHD L:BCB302 3.6 76.0 0.3
CHD L:BCB302 3.7 76.0 0.7
CBB L:BPB303 4.1 79.8 0.7
CBB L:BPB303 4.2 79.8 0.3
C3D L:BCB302 4.3 78.2 0.3
ND1 L:HIS153 4.3 76.9 0.3
C3A L:BCB302 4.3 78.7 0.7
C3B L:BCB302 4.3 74.9 0.7
C2A L:BCB302 4.3 78.3 0.7
C2A L:BCB302 4.3 78.3 0.3
C2B L:BCB302 4.3 75.0 0.7
C3A L:BCB302 4.3 78.7 0.3
C2D L:BCB302 4.3 75.3 0.3
ND1 L:HIS153 4.3 76.9 0.7
CG L:HIS153 4.3 77.0 0.3
C3C L:BCB302 4.4 76.6 0.3
C3D L:BCB302 4.4 78.2 0.7
CG L:HIS153 4.4 77.0 0.7
C3B L:BCB302 4.4 74.9 0.3
C3C L:BCB302 4.4 76.6 0.7
C2B L:BCB302 4.4 75.0 0.3
C2D L:BCB302 4.4 75.3 0.7
C2C L:BCB302 4.5 75.6 0.3
C2C L:BCB302 4.5 75.6 0.7
CE2 M:TYR208 4.5 76.6 0.3
CE2 M:TYR208 4.5 76.6 0.7
CBA L:BCB302 4.8 77.0 0.3
CBD L:BCB302 4.8 76.7 0.3
CBA L:BCB302 4.9 77.0 0.7
CBD L:BCB302 4.9 76.7 0.7
CD2 L:LEU154 4.9 78.9 0.7

Magnesium binding site 5 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 5 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg304

b:81.5
occ:1.00
MG L:BCB304 0.0 81.5 1.0
NA L:BCB304 2.0 81.5 1.0
ND L:BCB304 2.0 77.5 1.0
NB L:BCB304 2.0 82.6 1.0
NC L:BCB304 2.1 84.3 1.0
NE2 M:HIS180 2.1 77.6 1.0
C1A L:BCB304 3.0 77.7 1.0
C4A L:BCB304 3.0 82.0 1.0
C4D L:BCB304 3.0 76.4 1.0
C1B L:BCB304 3.1 82.1 1.0
C4B L:BCB304 3.1 81.8 1.0
CE1 M:HIS180 3.1 79.1 1.0
C4C L:BCB304 3.1 79.6 1.0
C1D L:BCB304 3.1 82.0 1.0
C1C L:BCB304 3.1 77.1 1.0
CD2 M:HIS180 3.2 78.4 1.0
CHB L:BCB304 3.4 80.1 1.0
CHA L:BCB304 3.4 78.3 1.0
CHC L:BCB304 3.5 81.7 1.0
CHD L:BCB304 3.6 80.3 1.0
ND1 M:HIS180 4.2 76.8 1.0
C3D L:BCB304 4.3 78.8 1.0
CG M:HIS180 4.3 77.8 1.0
C2A L:BCB304 4.3 80.6 1.0
C3C L:BCB304 4.3 78.6 1.0
C3A L:BCB304 4.3 80.7 1.0
C2D L:BCB304 4.4 80.0 1.0
C3B L:BCB304 4.4 84.5 1.0
OBB M:BPB404 4.4 97.8 1.0
C2B L:BCB304 4.4 82.4 1.0
C2C L:BCB304 4.5 76.2 1.0
CE2 L:PHE181 4.8 80.0 1.0
CBA L:BCB304 4.8 89.2 1.0
CBD L:BCB304 4.9 80.7 1.0

Magnesium binding site 6 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 6 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:74.5
occ:0.70
MG M:BCB403 0.0 74.5 0.7
MG M:BCB403 0.1 74.5 0.3
NA M:BCB403 2.0 75.3 0.3
NA M:BCB403 2.0 75.3 0.7
ND M:BCB403 2.0 70.9 0.7
NC M:BCB403 2.0 71.2 0.7
ND M:BCB403 2.0 70.9 0.3
NB M:BCB403 2.0 68.5 0.7
NB M:BCB403 2.1 68.5 0.3
NE2 M:HIS200 2.1 78.1 0.7
NC M:BCB403 2.1 71.2 0.3
NE2 M:HIS200 2.2 78.1 0.3
C1A M:BCB403 2.9 74.0 0.3
C4A M:BCB403 3.0 72.0 0.3
C4D M:BCB403 3.0 72.9 0.3
C4D M:BCB403 3.0 72.9 0.7
C1A M:BCB403 3.0 74.0 0.7
CE1 M:HIS200 3.0 80.8 0.7
C4A M:BCB403 3.0 72.0 0.7
C1B M:BCB403 3.1 67.5 0.7
C1B M:BCB403 3.1 67.5 0.3
C4B M:BCB403 3.1 67.4 0.7
C1C M:BCB403 3.1 68.0 0.7
C4C M:BCB403 3.1 71.0 0.7
C1D M:BCB403 3.1 76.2 0.7
C4B M:BCB403 3.1 67.4 0.3
C1D M:BCB403 3.1 76.2 0.3
CD2 M:HIS200 3.2 77.4 0.3
C1C M:BCB403 3.2 68.0 0.3
C4C M:BCB403 3.2 71.0 0.3
CE1 M:HIS200 3.2 80.8 0.3
CD2 M:HIS200 3.2 77.4 0.7
CBB L:BCB301 3.3 73.5 0.3
CHA M:BCB403 3.3 73.3 0.3
CHA M:BCB403 3.4 73.3 0.7
CHB M:BCB403 3.4 69.1 0.3
CHB M:BCB403 3.4 69.1 0.7
CBB L:BCB301 3.4 73.5 0.7
CHC M:BCB403 3.4 67.7 0.7
CHC M:BCB403 3.5 67.7 0.3
CAB L:BCB301 3.5 71.5 0.3
CHD M:BCB403 3.6 74.5 0.7
CHD M:BCB403 3.6 74.5 0.3
CAB L:BCB301 3.6 71.5 0.7
OBB L:BCB301 3.7 74.9 0.3
OBB L:BCB301 3.8 74.9 0.7
ND1 M:HIS200 4.2 73.9 0.7
C3B L:BCB301 4.2 70.9 0.3
C2A M:BCB403 4.3 76.8 0.3
C3D M:BCB403 4.3 74.2 0.3
C3D M:BCB403 4.3 74.2 0.7
C3A M:BCB403 4.3 75.5 0.3
ND1 M:HIS200 4.3 73.9 0.3
CG M:HIS200 4.3 74.4 0.7
CG M:HIS200 4.3 74.4 0.3
C3C M:BCB403 4.3 73.2 0.7
C2D M:BCB403 4.3 73.6 0.7
C2A M:BCB403 4.3 76.8 0.7
C3B L:BCB301 4.3 70.9 0.7
C2D M:BCB403 4.3 73.6 0.3
C3A M:BCB403 4.4 75.5 0.7
C3B M:BCB403 4.4 70.4 0.7
C2B M:BCB403 4.4 68.8 0.7
C3C M:BCB403 4.4 73.2 0.3
C3B M:BCB403 4.4 70.4 0.3
C2C M:BCB403 4.4 73.0 0.7
C2B M:BCB403 4.4 68.8 0.3
C2C M:BCB403 4.5 73.0 0.3
CBD M:BCB403 4.8 78.1 0.3
CBD M:BCB403 4.8 78.1 0.7
CMC M:BCB403 4.8 75.3 0.7
CD2 M:PHE194 4.9 76.1 0.3
CD1 M:ILE204 4.9 76.9 0.7
CMC M:BCB403 5.0 75.3 0.3

Magnesium binding site 7 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 7 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:74.5
occ:0.30
MG M:BCB403 0.0 74.5 0.3
MG M:BCB403 0.1 74.5 0.7
NC M:BCB403 2.0 71.2 0.7
NB M:BCB403 2.0 68.5 0.7
NA M:BCB403 2.0 75.3 0.3
ND M:BCB403 2.0 70.9 0.7
NC M:BCB403 2.0 71.2 0.3
ND M:BCB403 2.0 70.9 0.3
NB M:BCB403 2.0 68.5 0.3
NA M:BCB403 2.1 75.3 0.7
NE2 M:HIS200 2.2 78.1 0.7
NE2 M:HIS200 2.3 78.1 0.3
C1A M:BCB403 3.0 74.0 0.3
C4A M:BCB403 3.0 72.0 0.3
C4D M:BCB403 3.0 72.9 0.3
C1C M:BCB403 3.0 68.0 0.7
C4D M:BCB403 3.0 72.9 0.7
C4C M:BCB403 3.0 71.0 0.7
C4B M:BCB403 3.0 67.4 0.7
C1B M:BCB403 3.0 67.5 0.7
C1A M:BCB403 3.1 74.0 0.7
C4A M:BCB403 3.1 72.0 0.7
C1B M:BCB403 3.1 67.5 0.3
C4B M:BCB403 3.1 67.4 0.3
CE1 M:HIS200 3.1 80.8 0.7
C1C M:BCB403 3.1 68.0 0.3
C1D M:BCB403 3.1 76.2 0.7
C4C M:BCB403 3.1 71.0 0.3
C1D M:BCB403 3.1 76.2 0.3
CBB L:BCB301 3.2 73.5 0.3
CE1 M:HIS200 3.2 80.8 0.3
CD2 M:HIS200 3.3 77.4 0.3
CD2 M:HIS200 3.3 77.4 0.7
CBB L:BCB301 3.3 73.5 0.7
CHB M:BCB403 3.4 69.1 0.3
CHC M:BCB403 3.4 67.7 0.7
CHA M:BCB403 3.4 73.3 0.3
CAB L:BCB301 3.4 71.5 0.3
CHB M:BCB403 3.4 69.1 0.7
CHC M:BCB403 3.4 67.7 0.3
CHA M:BCB403 3.4 73.3 0.7
CAB L:BCB301 3.5 71.5 0.7
CHD M:BCB403 3.5 74.5 0.7
CHD M:BCB403 3.6 74.5 0.3
OBB L:BCB301 3.6 74.9 0.3
OBB L:BCB301 3.7 74.9 0.7
C3B L:BCB301 4.1 70.9 0.3
C3B L:BCB301 4.2 70.9 0.7
C3C M:BCB403 4.3 73.2 0.7
ND1 M:HIS200 4.3 73.9 0.7
C3D M:BCB403 4.3 74.2 0.3
C3D M:BCB403 4.3 74.2 0.7
C3A M:BCB403 4.3 75.5 0.3
C3C M:BCB403 4.3 73.2 0.3
C2A M:BCB403 4.3 76.8 0.3
C2D M:BCB403 4.3 73.6 0.7
C3B M:BCB403 4.4 70.4 0.7
C2D M:BCB403 4.4 73.6 0.3
C2C M:BCB403 4.4 73.0 0.7
C2B M:BCB403 4.4 68.8 0.7
ND1 M:HIS200 4.4 73.9 0.3
C3B M:BCB403 4.4 70.4 0.3
C3A M:BCB403 4.4 75.5 0.7
C2A M:BCB403 4.4 76.8 0.7
CG M:HIS200 4.4 74.4 0.7
C2B M:BCB403 4.4 68.8 0.3
CG M:HIS200 4.4 74.4 0.3
C2C M:BCB403 4.5 73.0 0.3
CMC M:BCB403 4.8 75.3 0.7
CBD M:BCB403 4.8 78.1 0.3
CBD M:BCB403 4.9 78.1 0.7
C4B L:BCB301 4.9 69.3 0.3
C2B L:BCB301 4.9 71.8 0.3
CMC M:BCB403 4.9 75.3 0.3
CD2 M:PHE194 5.0 76.1 0.3
C4B L:BCB301 5.0 69.3 0.7

Reference:

R.Dods, P.Baath, D.Morozov, V.A.Gagner, A.Arnlund, H.L.Luk, J.Kuebel, M.Maj, A.Vallejos, C.Wickstrand, R.Bosman, K.R.Beyerlein, G.Nelson, M.Liang, D.Milathianaki, J.Robinson, R.Harimoorthy, P.Berntsen, E.Malmerberg, L.Johansson, R.Andersson, S.Carbajo, E.Claesson, C.E.Conrad, P.Dahl, G.Hammarin, M.S.Hunter, C.Li, S.Lisova, A.Royant, C.Safari, A.Sharma, G.J.Williams, O.Yefanov, S.Westenhoff, J.Davidsson, D.P.Deponte, S.Boutet, A.Barty, G.Katona, G.Groenhof, G.Braenden, R.Neutze. Ultrafast Structural Changes Within A Photosynthetic Reaction Centre Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-020-3000-7
Page generated: Wed Oct 2 02:21:31 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy