Magnesium in PDB 6zid: Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure

Protein crystallography data

The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure, PDB code: 6zid was solved by P.Baath, R.Dods, G.Braenden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.31 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 226.500, 226.500, 113.900, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.3

Other elements in 6zid:

The structure of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure (pdb code 6zid). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure, PDB code: 6zid:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 6zid

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Magnesium binding site 1 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg301

b:74.8
occ:0.70
MG L:BCB301 0.0 74.8 0.7
MG L:BCB301 0.2 74.8 0.3
NA L:BCB301 1.9 70.7 0.3
NA L:BCB301 2.0 70.7 0.7
ND L:BCB301 2.0 69.0 0.7
NB L:BCB301 2.0 72.3 0.3
NB L:BCB301 2.0 72.3 0.7
NC L:BCB301 2.1 72.3 0.7
ND L:BCB301 2.1 69.0 0.3
NE2 L:HIS173 2.1 74.6 0.7
NC L:BCB301 2.2 72.3 0.3
NE2 L:HIS173 2.4 74.6 0.3
C4A L:BCB301 2.8 71.2 0.3
C1A L:BCB301 2.8 70.7 0.3
C1B L:BCB301 3.0 72.0 0.3
C4D L:BCB301 3.0 68.9 0.3
C4D L:BCB301 3.0 68.9 0.7
C1A L:BCB301 3.0 70.7 0.7
C4A L:BCB301 3.0 71.2 0.7
CE1 L:HIS173 3.0 74.5 0.7
C1B L:BCB301 3.1 72.0 0.7
C4B L:BCB301 3.1 69.3 0.7
C1D L:BCB301 3.1 73.0 0.7
C4C L:BCB301 3.1 71.3 0.7
C4B L:BCB301 3.1 69.3 0.3
C1C L:BCB301 3.1 72.0 0.7
CD2 L:HIS173 3.2 72.8 0.7
C1D L:BCB301 3.2 73.0 0.3
CHB L:BCB301 3.2 72.0 0.3
C1C L:BCB301 3.3 72.0 0.3
C4C L:BCB301 3.3 71.3 0.3
CD2 L:HIS173 3.3 72.8 0.3
CHA L:BCB301 3.3 71.4 0.3
CHB L:BCB301 3.4 72.0 0.7
CBB M:BCB403 3.4 72.2 0.7
CHA L:BCB301 3.4 71.4 0.7
CE1 L:HIS173 3.4 74.5 0.3
CHC L:BCB301 3.5 68.0 0.7
CAB M:BCB403 3.5 69.5 0.3
CHC L:BCB301 3.5 68.0 0.3
OBB M:BCB403 3.6 72.7 0.3
CBB M:BCB403 3.6 72.2 0.3
CHD L:BCB301 3.6 70.8 0.7
CAB M:BCB403 3.6 69.5 0.7
CHD L:BCB301 3.7 70.8 0.3
OBB M:BCB403 3.9 72.7 0.7
C2A L:BCB301 4.2 70.7 0.3
C3A L:BCB301 4.2 70.3 0.3
ND1 L:HIS173 4.2 71.5 0.7
C3B M:BCB403 4.3 70.4 0.3
CD1 L:TRP167 4.3 73.2 0.3
CG L:HIS173 4.3 74.6 0.7
C3D L:BCB301 4.3 71.3 0.7
C3D L:BCB301 4.3 71.3 0.3
C3B M:BCB403 4.3 70.4 0.7
NE1 L:TRP167 4.3 73.3 0.3
C3A L:BCB301 4.3 70.3 0.7
C2D L:BCB301 4.3 71.5 0.7
C2A L:BCB301 4.3 70.7 0.7
C2B L:BCB301 4.3 71.8 0.3
CD1 L:TRP167 4.3 73.2 0.7
C3C L:BCB301 4.4 69.7 0.7
C3B L:BCB301 4.4 70.9 0.7
C2B L:BCB301 4.4 71.8 0.7
C3B L:BCB301 4.4 70.9 0.3
NE1 L:TRP167 4.4 73.3 0.7
C2D L:BCB301 4.4 71.5 0.3
CG L:HIS173 4.4 74.6 0.3
ND1 L:HIS173 4.5 71.5 0.3
C3C L:BCB301 4.5 69.7 0.3
C2C L:BCB301 4.5 73.7 0.7
C2C L:BCB301 4.7 73.7 0.3
CBD L:BCB301 4.8 72.1 0.3
CBD L:BCB301 4.9 72.1 0.7
C2B M:BCB403 4.9 68.8 0.3

Magnesium binding site 2 out of 7 in 6zid

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Magnesium binding site 2 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg301

b:74.8
occ:0.30
MG L:BCB301 0.0 74.8 0.3
MG L:BCB301 0.2 74.8 0.7
NC L:BCB301 1.9 72.3 0.7
ND L:BCB301 2.0 69.0 0.7
NA L:BCB301 2.0 70.7 0.3
ND L:BCB301 2.0 69.0 0.3
NB L:BCB301 2.0 72.3 0.3
NC L:BCB301 2.1 72.3 0.3
NB L:BCB301 2.1 72.3 0.7
NA L:BCB301 2.2 70.7 0.7
NE2 L:HIS173 2.3 74.6 0.7
NE2 L:HIS173 2.6 74.6 0.3
C4C L:BCB301 2.9 71.3 0.7
C1C L:BCB301 3.0 72.0 0.7
C4A L:BCB301 3.0 71.2 0.3
C1A L:BCB301 3.0 70.7 0.3
C4D L:BCB301 3.0 68.9 0.3
C1D L:BCB301 3.0 73.0 0.7
C4D L:BCB301 3.0 68.9 0.7
C1B L:BCB301 3.1 72.0 0.3
C4B L:BCB301 3.1 69.3 0.7
C4B L:BCB301 3.1 69.3 0.3
C1C L:BCB301 3.1 72.0 0.3
C4C L:BCB301 3.1 71.3 0.3
C1D L:BCB301 3.1 73.0 0.3
C1B L:BCB301 3.1 72.0 0.7
C1A L:BCB301 3.1 70.7 0.7
CE1 L:HIS173 3.2 74.5 0.7
C4A L:BCB301 3.2 71.2 0.7
CD2 L:HIS173 3.3 72.8 0.7
CBB M:BCB403 3.3 72.2 0.7
CHC L:BCB301 3.4 68.0 0.7
CHB L:BCB301 3.4 72.0 0.3
OBB M:BCB403 3.4 72.7 0.3
CHA L:BCB301 3.4 71.4 0.3
CAB M:BCB403 3.4 69.5 0.3
CHD L:BCB301 3.4 70.8 0.7
CHC L:BCB301 3.5 68.0 0.3
CD2 L:HIS173 3.5 72.8 0.3
CBB M:BCB403 3.5 72.2 0.3
CAB M:BCB403 3.5 69.5 0.7
CHA L:BCB301 3.5 71.4 0.7
CE1 L:HIS173 3.5 74.5 0.3
CHB L:BCB301 3.5 72.0 0.7
CHD L:BCB301 3.6 70.8 0.3
OBB M:BCB403 3.7 72.7 0.7
C3B M:BCB403 4.2 70.4 0.3
C3C L:BCB301 4.2 69.7 0.7
C3B M:BCB403 4.2 70.4 0.7
CD1 L:TRP167 4.3 73.2 0.3
C2D L:BCB301 4.3 71.5 0.7
C3D L:BCB301 4.3 71.3 0.7
C3D L:BCB301 4.3 71.3 0.3
ND1 L:HIS173 4.3 71.5 0.7
C3A L:BCB301 4.3 70.3 0.3
C2A L:BCB301 4.3 70.7 0.3
C3C L:BCB301 4.3 69.7 0.3
C2D L:BCB301 4.3 71.5 0.3
CD1 L:TRP167 4.3 73.2 0.7
C2C L:BCB301 4.4 73.7 0.7
NE1 L:TRP167 4.4 73.3 0.3
C3B L:BCB301 4.4 70.9 0.7
C3B L:BCB301 4.4 70.9 0.3
C2B L:BCB301 4.4 71.8 0.3
CG L:HIS173 4.4 74.6 0.7
NE1 L:TRP167 4.4 73.3 0.7
C2B L:BCB301 4.4 71.8 0.7
C3A L:BCB301 4.5 70.3 0.7
C2C L:BCB301 4.5 73.7 0.3
C2A L:BCB301 4.5 70.7 0.7
ND1 L:HIS173 4.6 71.5 0.3
CG L:HIS173 4.6 74.6 0.3
CBD L:BCB301 4.9 72.1 0.3
C2B M:BCB403 4.9 68.8 0.3
CBD L:BCB301 4.9 72.1 0.7
C4B M:BCB403 5.0 67.4 0.3
C2B M:BCB403 5.0 68.8 0.7
C4B M:BCB403 5.0 67.4 0.7

Magnesium binding site 3 out of 7 in 6zid

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Magnesium binding site 3 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:76.1
occ:0.70
MG L:BCB302 0.0 76.1 0.7
MG L:BCB302 0.1 76.1 0.3
ND L:BCB302 1.9 76.9 0.3
NA L:BCB302 2.0 78.5 0.7
NC L:BCB302 2.0 76.8 0.3
NA L:BCB302 2.0 78.5 0.3
ND L:BCB302 2.0 76.9 0.7
NB L:BCB302 2.1 77.1 0.7
NC L:BCB302 2.1 76.8 0.7
NB L:BCB302 2.2 77.1 0.3
NE2 L:HIS153 2.2 78.6 0.3
NE2 L:HIS153 2.3 78.6 0.7
C4D L:BCB302 2.9 77.6 0.3
C1A L:BCB302 3.0 78.0 0.3
C1A L:BCB302 3.0 78.0 0.7
C4D L:BCB302 3.0 77.6 0.7
C1D L:BCB302 3.0 77.4 0.3
C4A L:BCB302 3.0 76.3 0.7
C4C L:BCB302 3.0 75.8 0.3
C4A L:BCB302 3.1 76.3 0.3
C1B L:BCB302 3.1 73.2 0.7
C4B L:BCB302 3.1 73.0 0.7
C1D L:BCB302 3.1 77.4 0.7
C1C L:BCB302 3.1 72.6 0.7
C4C L:BCB302 3.1 75.8 0.7
C1C L:BCB302 3.1 72.6 0.3
CE1 L:HIS153 3.2 78.7 0.3
C1B L:BCB302 3.2 73.2 0.3
C4B L:BCB302 3.2 73.0 0.3
CE1 L:HIS153 3.2 78.7 0.7
CD2 L:HIS153 3.2 80.2 0.3
CD2 L:HIS153 3.3 80.2 0.7
CHA L:BCB302 3.3 75.8 0.3
CHA L:BCB302 3.4 75.8 0.7
CHB L:BCB302 3.4 76.2 0.7
CHC L:BCB302 3.5 72.9 0.7
CHD L:BCB302 3.5 76.0 0.3
CHB L:BCB302 3.5 76.2 0.3
CHC L:BCB302 3.5 72.9 0.3
CHD L:BCB302 3.6 76.0 0.7
CBB L:BPB303 4.1 79.8 0.7
C3D L:BCB302 4.2 78.2 0.3
C2D L:BCB302 4.2 75.3 0.3
CBB L:BPB303 4.2 79.8 0.3
C3D L:BCB302 4.3 78.2 0.7
C3C L:BCB302 4.3 76.6 0.3
C2A L:BCB302 4.3 78.3 0.7
ND1 L:HIS153 4.3 76.9 0.3
C2A L:BCB302 4.3 78.3 0.3
C2D L:BCB302 4.3 75.3 0.7
C3A L:BCB302 4.3 78.7 0.7
C3C L:BCB302 4.4 76.6 0.7
ND1 L:HIS153 4.4 76.9 0.7
C3A L:BCB302 4.4 78.7 0.3
CG L:HIS153 4.4 77.0 0.3
C3B L:BCB302 4.4 74.9 0.7
CG L:HIS153 4.4 77.0 0.7
CE2 M:TYR208 4.4 76.6 0.3
C2B L:BCB302 4.4 75.0 0.7
CE2 M:TYR208 4.5 76.6 0.7
C2C L:BCB302 4.5 75.6 0.3
C2C L:BCB302 4.5 75.6 0.7
C3B L:BCB302 4.5 74.9 0.3
C2B L:BCB302 4.5 75.0 0.3
CBD L:BCB302 4.8 76.7 0.3
CBA L:BCB302 4.8 77.0 0.3
CBD L:BCB302 4.8 76.7 0.7
CD2 L:LEU154 4.9 78.9 0.7
CBA L:BCB302 4.9 77.0 0.7

Magnesium binding site 4 out of 7 in 6zid

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Magnesium binding site 4 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:76.1
occ:0.30
MG L:BCB302 0.0 76.1 0.3
MG L:BCB302 0.1 76.1 0.7
NB L:BCB302 2.0 77.1 0.7
NA L:BCB302 2.0 78.5 0.7
NA L:BCB302 2.0 78.5 0.3
ND L:BCB302 2.0 76.9 0.3
NB L:BCB302 2.1 77.1 0.3
NC L:BCB302 2.1 76.8 0.3
NC L:BCB302 2.1 76.8 0.7
ND L:BCB302 2.2 76.9 0.7
NE2 L:HIS153 2.2 78.6 0.3
NE2 L:HIS153 2.2 78.6 0.7
C4A L:BCB302 2.9 76.3 0.7
C1B L:BCB302 3.0 73.2 0.7
C1A L:BCB302 3.0 78.0 0.3
C1A L:BCB302 3.0 78.0 0.7
C4A L:BCB302 3.0 76.3 0.3
C4D L:BCB302 3.0 77.6 0.3
C4B L:BCB302 3.0 73.0 0.7
C1B L:BCB302 3.1 73.2 0.3
C4D L:BCB302 3.1 77.6 0.7
C4B L:BCB302 3.1 73.0 0.3
C4C L:BCB302 3.1 75.8 0.3
C1D L:BCB302 3.1 77.4 0.3
C1C L:BCB302 3.1 72.6 0.7
C1C L:BCB302 3.1 72.6 0.3
CE1 L:HIS153 3.1 78.7 0.3
C4C L:BCB302 3.2 75.8 0.7
CD2 L:HIS153 3.2 80.2 0.3
CE1 L:HIS153 3.2 78.7 0.7
CD2 L:HIS153 3.2 80.2 0.7
C1D L:BCB302 3.2 77.4 0.7
CHB L:BCB302 3.3 76.2 0.7
CHA L:BCB302 3.4 75.8 0.3
CHB L:BCB302 3.4 76.2 0.3
CHC L:BCB302 3.4 72.9 0.7
CHA L:BCB302 3.4 75.8 0.7
CHC L:BCB302 3.5 72.9 0.3
CHD L:BCB302 3.6 76.0 0.3
CHD L:BCB302 3.7 76.0 0.7
CBB L:BPB303 4.1 79.8 0.7
CBB L:BPB303 4.2 79.8 0.3
C3D L:BCB302 4.3 78.2 0.3
ND1 L:HIS153 4.3 76.9 0.3
C3A L:BCB302 4.3 78.7 0.7
C3B L:BCB302 4.3 74.9 0.7
C2A L:BCB302 4.3 78.3 0.7
C2A L:BCB302 4.3 78.3 0.3
C2B L:BCB302 4.3 75.0 0.7
C3A L:BCB302 4.3 78.7 0.3
C2D L:BCB302 4.3 75.3 0.3
ND1 L:HIS153 4.3 76.9 0.7
CG L:HIS153 4.3 77.0 0.3
C3C L:BCB302 4.4 76.6 0.3
C3D L:BCB302 4.4 78.2 0.7
CG L:HIS153 4.4 77.0 0.7
C3B L:BCB302 4.4 74.9 0.3
C3C L:BCB302 4.4 76.6 0.7
C2B L:BCB302 4.4 75.0 0.3
C2D L:BCB302 4.4 75.3 0.7
C2C L:BCB302 4.5 75.6 0.3
C2C L:BCB302 4.5 75.6 0.7
CE2 M:TYR208 4.5 76.6 0.3
CE2 M:TYR208 4.5 76.6 0.7
CBA L:BCB302 4.8 77.0 0.3
CBD L:BCB302 4.8 76.7 0.3
CBA L:BCB302 4.9 77.0 0.7
CBD L:BCB302 4.9 76.7 0.7
CD2 L:LEU154 4.9 78.9 0.7

Magnesium binding site 5 out of 7 in 6zid

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Magnesium binding site 5 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg304

b:81.5
occ:1.00
MG L:BCB304 0.0 81.5 1.0
NA L:BCB304 2.0 81.5 1.0
ND L:BCB304 2.0 77.5 1.0
NB L:BCB304 2.0 82.6 1.0
NC L:BCB304 2.1 84.3 1.0
NE2 M:HIS180 2.1 77.6 1.0
C1A L:BCB304 3.0 77.7 1.0
C4A L:BCB304 3.0 82.0 1.0
C4D L:BCB304 3.0 76.4 1.0
C1B L:BCB304 3.1 82.1 1.0
C4B L:BCB304 3.1 81.8 1.0
CE1 M:HIS180 3.1 79.1 1.0
C4C L:BCB304 3.1 79.6 1.0
C1D L:BCB304 3.1 82.0 1.0
C1C L:BCB304 3.1 77.1 1.0
CD2 M:HIS180 3.2 78.4 1.0
CHB L:BCB304 3.4 80.1 1.0
CHA L:BCB304 3.4 78.3 1.0
CHC L:BCB304 3.5 81.7 1.0
CHD L:BCB304 3.6 80.3 1.0
ND1 M:HIS180 4.2 76.8 1.0
C3D L:BCB304 4.3 78.8 1.0
CG M:HIS180 4.3 77.8 1.0
C2A L:BCB304 4.3 80.6 1.0
C3C L:BCB304 4.3 78.6 1.0
C3A L:BCB304 4.3 80.7 1.0
C2D L:BCB304 4.4 80.0 1.0
C3B L:BCB304 4.4 84.5 1.0
OBB M:BPB404 4.4 97.8 1.0
C2B L:BCB304 4.4 82.4 1.0
C2C L:BCB304 4.5 76.2 1.0
CE2 L:PHE181 4.8 80.0 1.0
CBA L:BCB304 4.8 89.2 1.0
CBD L:BCB304 4.9 80.7 1.0

Magnesium binding site 6 out of 7 in 6zid

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Magnesium binding site 6 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:74.5
occ:0.70
MG M:BCB403 0.0 74.5 0.7
MG M:BCB403 0.1 74.5 0.3
NA M:BCB403 2.0 75.3 0.3
NA M:BCB403 2.0 75.3 0.7
ND M:BCB403 2.0 70.9 0.7
NC M:BCB403 2.0 71.2 0.7
ND M:BCB403 2.0 70.9 0.3
NB M:BCB403 2.0 68.5 0.7
NB M:BCB403 2.1 68.5 0.3
NE2 M:HIS200 2.1 78.1 0.7
NC M:BCB403 2.1 71.2 0.3
NE2 M:HIS200 2.2 78.1 0.3
C1A M:BCB403 2.9 74.0 0.3
C4A M:BCB403 3.0 72.0 0.3
C4D M:BCB403 3.0 72.9 0.3
C4D M:BCB403 3.0 72.9 0.7
C1A M:BCB403 3.0 74.0 0.7
CE1 M:HIS200 3.0 80.8 0.7
C4A M:BCB403 3.0 72.0 0.7
C1B M:BCB403 3.1 67.5 0.7
C1B M:BCB403 3.1 67.5 0.3
C4B M:BCB403 3.1 67.4 0.7
C1C M:BCB403 3.1 68.0 0.7
C4C M:BCB403 3.1 71.0 0.7
C1D M:BCB403 3.1 76.2 0.7
C4B M:BCB403 3.1 67.4 0.3
C1D M:BCB403 3.1 76.2 0.3
CD2 M:HIS200 3.2 77.4 0.3
C1C M:BCB403 3.2 68.0 0.3
C4C M:BCB403 3.2 71.0 0.3
CE1 M:HIS200 3.2 80.8 0.3
CD2 M:HIS200 3.2 77.4 0.7
CBB L:BCB301 3.3 73.5 0.3
CHA M:BCB403 3.3 73.3 0.3
CHA M:BCB403 3.4 73.3 0.7
CHB M:BCB403 3.4 69.1 0.3
CHB M:BCB403 3.4 69.1 0.7
CBB L:BCB301 3.4 73.5 0.7
CHC M:BCB403 3.4 67.7 0.7
CHC M:BCB403 3.5 67.7 0.3
CAB L:BCB301 3.5 71.5 0.3
CHD M:BCB403 3.6 74.5 0.7
CHD M:BCB403 3.6 74.5 0.3
CAB L:BCB301 3.6 71.5 0.7
OBB L:BCB301 3.7 74.9 0.3
OBB L:BCB301 3.8 74.9 0.7
ND1 M:HIS200 4.2 73.9 0.7
C3B L:BCB301 4.2 70.9 0.3
C2A M:BCB403 4.3 76.8 0.3
C3D M:BCB403 4.3 74.2 0.3
C3D M:BCB403 4.3 74.2 0.7
C3A M:BCB403 4.3 75.5 0.3
ND1 M:HIS200 4.3 73.9 0.3
CG M:HIS200 4.3 74.4 0.7
CG M:HIS200 4.3 74.4 0.3
C3C M:BCB403 4.3 73.2 0.7
C2D M:BCB403 4.3 73.6 0.7
C2A M:BCB403 4.3 76.8 0.7
C3B L:BCB301 4.3 70.9 0.7
C2D M:BCB403 4.3 73.6 0.3
C3A M:BCB403 4.4 75.5 0.7
C3B M:BCB403 4.4 70.4 0.7
C2B M:BCB403 4.4 68.8 0.7
C3C M:BCB403 4.4 73.2 0.3
C3B M:BCB403 4.4 70.4 0.3
C2C M:BCB403 4.4 73.0 0.7
C2B M:BCB403 4.4 68.8 0.3
C2C M:BCB403 4.5 73.0 0.3
CBD M:BCB403 4.8 78.1 0.3
CBD M:BCB403 4.8 78.1 0.7
CMC M:BCB403 4.8 75.3 0.7
CD2 M:PHE194 4.9 76.1 0.3
CD1 M:ILE204 4.9 76.9 0.7
CMC M:BCB403 5.0 75.3 0.3

Magnesium binding site 7 out of 7 in 6zid

Go back to Magnesium Binding Sites List in 6zid
Magnesium binding site 7 out of 7 in the Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ultrafast Structural Response to Charge Redistribution Within A Photosynthetic Reaction Centre - 5 Ps (B) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:74.5
occ:0.30
MG M:BCB403 0.0 74.5 0.3
MG M:BCB403 0.1 74.5 0.7
NC M:BCB403 2.0 71.2 0.7
NB M:BCB403 2.0 68.5 0.7
NA M:BCB403 2.0 75.3 0.3
ND M:BCB403 2.0 70.9 0.7
NC M:BCB403 2.0 71.2 0.3
ND M:BCB403 2.0 70.9 0.3
NB M:BCB403 2.0 68.5 0.3
NA M:BCB403 2.1 75.3 0.7
NE2 M:HIS200 2.2 78.1 0.7
NE2 M:HIS200 2.3 78.1 0.3
C1A M:BCB403 3.0 74.0 0.3
C4A M:BCB403 3.0 72.0 0.3
C4D M:BCB403 3.0 72.9 0.3
C1C M:BCB403 3.0 68.0 0.7
C4D M:BCB403 3.0 72.9 0.7
C4C M:BCB403 3.0 71.0 0.7
C4B M:BCB403 3.0 67.4 0.7
C1B M:BCB403 3.0 67.5 0.7
C1A M:BCB403 3.1 74.0 0.7
C4A M:BCB403 3.1 72.0 0.7
C1B M:BCB403 3.1 67.5 0.3
C4B M:BCB403 3.1 67.4 0.3
CE1 M:HIS200 3.1 80.8 0.7
C1C M:BCB403 3.1 68.0 0.3
C1D M:BCB403 3.1 76.2 0.7
C4C M:BCB403 3.1 71.0 0.3
C1D M:BCB403 3.1 76.2 0.3
CBB L:BCB301 3.2 73.5 0.3
CE1 M:HIS200 3.2 80.8 0.3
CD2 M:HIS200 3.3 77.4 0.3
CD2 M:HIS200 3.3 77.4 0.7
CBB L:BCB301 3.3 73.5 0.7
CHB M:BCB403 3.4 69.1 0.3
CHC M:BCB403 3.4 67.7 0.7
CHA M:BCB403 3.4 73.3 0.3
CAB L:BCB301 3.4 71.5 0.3
CHB M:BCB403 3.4 69.1 0.7
CHC M:BCB403 3.4 67.7 0.3
CHA M:BCB403 3.4 73.3 0.7
CAB L:BCB301 3.5 71.5 0.7
CHD M:BCB403 3.5 74.5 0.7
CHD M:BCB403 3.6 74.5 0.3
OBB L:BCB301 3.6 74.9 0.3
OBB L:BCB301 3.7 74.9 0.7
C3B L:BCB301 4.1 70.9 0.3
C3B L:BCB301 4.2 70.9 0.7
C3C M:BCB403 4.3 73.2 0.7
ND1 M:HIS200 4.3 73.9 0.7
C3D M:BCB403 4.3 74.2 0.3
C3D M:BCB403 4.3 74.2 0.7
C3A M:BCB403 4.3 75.5 0.3
C3C M:BCB403 4.3 73.2 0.3
C2A M:BCB403 4.3 76.8 0.3
C2D M:BCB403 4.3 73.6 0.7
C3B M:BCB403 4.4 70.4 0.7
C2D M:BCB403 4.4 73.6 0.3
C2C M:BCB403 4.4 73.0 0.7
C2B M:BCB403 4.4 68.8 0.7
ND1 M:HIS200 4.4 73.9 0.3
C3B M:BCB403 4.4 70.4 0.3
C3A M:BCB403 4.4 75.5 0.7
C2A M:BCB403 4.4 76.8 0.7
CG M:HIS200 4.4 74.4 0.7
C2B M:BCB403 4.4 68.8 0.3
CG M:HIS200 4.4 74.4 0.3
C2C M:BCB403 4.5 73.0 0.3
CMC M:BCB403 4.8 75.3 0.7
CBD M:BCB403 4.8 78.1 0.3
CBD M:BCB403 4.9 78.1 0.7
C4B L:BCB301 4.9 69.3 0.3
C2B L:BCB301 4.9 71.8 0.3
CMC M:BCB403 4.9 75.3 0.3
CD2 M:PHE194 5.0 76.1 0.3
C4B L:BCB301 5.0 69.3 0.7

Reference:

R.Dods, P.Baath, D.Morozov, V.A.Gagner, A.Arnlund, H.L.Luk, J.Kuebel, M.Maj, A.Vallejos, C.Wickstrand, R.Bosman, K.R.Beyerlein, G.Nelson, M.Liang, D.Milathianaki, J.Robinson, R.Harimoorthy, P.Berntsen, E.Malmerberg, L.Johansson, R.Andersson, S.Carbajo, E.Claesson, C.E.Conrad, P.Dahl, G.Hammarin, M.S.Hunter, C.Li, S.Lisova, A.Royant, C.Safari, A.Sharma, G.J.Williams, O.Yefanov, S.Westenhoff, J.Davidsson, D.P.Deponte, S.Boutet, A.Barty, G.Katona, G.Groenhof, G.Braenden, R.Neutze. Ultrafast Structural Changes Within A Photosynthetic Reaction Centre Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-020-3000-7
Page generated: Tue Dec 15 02:59:26 2020

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