Magnesium in PDB 6zm2: Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna

The structure of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna, PDB code: 6zm2 was solved by F.Hamann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	81.78 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.66, 100.41, 140.95, 90, 90, 90
R / Rfree (%)	18.5 / 23.3

The structure of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna (pdb code 6zm2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna, PDB code: 6zm2:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with Adp-BEF3 and Ssrna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:34.2 occ:1.00 O A:HOH1213 2.1 29.6 1.0 OG1 A:THR327 2.1 29.2 1.0 F2 A:BEF1101 2.2 32.8 1.0 O2B A:ADP1102 2.2 34.5 1.0 O A:HOH1255 2.2 26.8 1.0 O A:HOH1211 2.2 28.2 1.0 CB A:THR327 3.0 30.1 1.0 BE A:BEF1101 3.2 30.8 1.0 PB A:ADP1102 3.3 33.7 1.0 OE2 A:GLU419 3.4 30.9 1.0 O3B A:ADP1102 3.5 33.0 1.0 OD2 A:ASP418 3.7 32.6 1.0 F3 A:BEF1101 3.9 33.9 1.0 O2A A:ADP1102 3.9 34.5 1.0 CG2 A:THR327 4.0 27.4 1.0 N A:THR327 4.0 35.4 1.0 CA A:THR327 4.1 31.1 1.0 CA A:SER578 4.3 26.9 1.0 O3A A:ADP1102 4.4 34.2 1.0 CG A:ASP418 4.4 40.2 1.0 OD1 A:ASP418 4.4 35.4 1.0 O1B A:ADP1102 4.4 29.3 1.0 F1 A:BEF1101 4.5 32.7 1.0 O A:SER578 4.5 28.8 1.0 PA A:ADP1102 4.6 34.2 1.0 O A:HOH1233 4.6 28.5 1.0 CD A:GLU419 4.7 34.6 1.0 OE1 A:GLN350 4.7 29.1 1.0 NZ A:LYS326 4.8 26.3 1.0 CB A:SER578 4.8 29.1 1.0 OG A:SER578 4.9 29.9 1.0 C A:SER578 4.9 29.2 1.0 CE A:LYS326 4.9 27.2 1.0 CB A:LYS326 5.0 32.3 1.0 O1A A:ADP1102 5.0 29.7 1.0

F.Hamann, L.C.Zimmerningkat, R.A.Becker, T.B.Garbers, P.Neumann, J.S.Hub, R.Ficner. The Structure of PRP2 Bound to Rna and Adp-Bef 3 - Reveals Structural Features Important For Rna Unwinding By Deah-Box Atpases. Acta Crystallogr D Struct V. 77 496 2021BIOL.
ISSN: ISSN 2059-7983
PubMed: 33825710
DOI: 10.1107/S2059798321001194