Magnesium in PDB 6zqm: Bovine Atp Synthase Monomer State 2 (Combined)

All present enzymatic activity of Bovine Atp Synthase Monomer State 2 (Combined):
7.1.2.2;

The binding sites of Magnesium atom in the Bovine Atp Synthase Monomer State 2 (Combined) (pdb code 6zqm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Atp Synthase Monomer State 2 (Combined), PDB code: 6zqm:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Bovine Atp Synthase Monomer State 2 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Atp Synthase Monomer State 2 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:19.8 occ:1.00 O2B A:ATP600 2.2 19.1 1.0 O2G A:ATP600 2.2 19.1 1.0 O A:HOH701 2.2 25.1 1.0 O A:HOH702 2.2 15.7 1.0 O A:HOH703 2.2 20.9 1.0 OG1 A:THR176 2.2 16.0 1.0 HB A:THR176 2.9 16.0 1.0 CB A:THR176 3.1 16.0 1.0 PB A:ATP600 3.3 19.1 1.0 PG A:ATP600 3.4 19.1 1.0 H A:THR176 3.6 16.0 1.0 O3B A:ATP600 3.6 19.1 1.0 HG21 A:THR176 3.7 16.0 1.0 CG2 A:THR176 4.0 16.0 1.0 O1G A:ATP600 4.1 19.1 1.0 O1B A:ATP600 4.1 19.1 1.0 O2A A:ATP600 4.2 19.1 1.0 N A:THR176 4.2 16.0 1.0 CA A:THR176 4.2 16.0 1.0 OD1 A:ASP269 4.3 13.6 1.0 OD2 A:ASP269 4.3 13.6 1.0 OE1 A:GLN208 4.4 16.9 1.0 HA A:THR176 4.5 16.0 1.0 O3A A:ATP600 4.6 19.1 1.0 O3G A:ATP600 4.6 19.1 1.0 HG22 A:THR176 4.6 16.0 1.0 HG23 A:THR176 4.7 16.0 1.0 HE2 A:LYS175 4.7 15.2 1.0 CG A:ASP269 4.7 13.6 1.0 HB2 A:LYS175 4.8 15.2 1.0 PA A:ATP600 4.8 19.1 1.0

Magnesium binding site 2 out of 5 in the Bovine Atp Synthase Monomer State 2 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Atp Synthase Monomer State 2 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:28.0 occ:1.00 O2B B:ATP600 2.2 30.1 1.0 O B:HOH702 2.2 24.4 1.0 O B:HOH701 2.2 17.6 1.0 O B:HOH703 2.2 39.5 1.0 OG1 B:THR176 2.2 24.9 1.0 O2G B:ATP600 2.2 30.1 1.0 HB B:THR176 2.8 24.9 1.0 O3G B:ATP600 3.0 30.1 1.0 PG B:ATP600 3.0 30.1 1.0 CB B:THR176 3.0 24.9 1.0 HE22 B:GLN208 3.1 21.9 1.0 PB B:ATP600 3.3 30.1 1.0 O3B B:ATP600 3.5 30.1 1.0 H B:THR176 3.6 24.9 1.0 HG21 B:THR176 3.6 24.9 1.0 CG2 B:THR176 3.9 24.9 1.0 O1A B:ATP600 3.9 30.1 1.0 NE2 B:GLN208 4.0 21.9 1.0 CA B:THR176 4.2 24.9 1.0 N B:THR176 4.2 24.9 1.0 O1B B:ATP600 4.3 30.1 1.0 HE21 B:GLN208 4.4 21.9 1.0 O1G B:ATP600 4.4 30.1 1.0 HG22 B:THR176 4.4 24.9 1.0 O3A B:ATP600 4.5 30.1 1.0 OD2 B:ASP269 4.5 16.7 1.0 HA B:THR176 4.6 24.9 1.0 HG23 B:THR176 4.6 24.9 1.0 PA B:ATP600 4.6 30.1 1.0 HG21 B:THR212 4.7 25.0 1.0 HH22 E:ARG356 4.7 32.3 1.0 OD1 B:ASP269 4.7 16.7 1.0 OE1 B:GLN208 4.7 21.9 1.0 CD B:GLN208 4.8 21.9 1.0 HB2 B:LYS175 4.9 21.6 1.0 O2A B:ATP600 4.9 30.1 1.0

Magnesium binding site 3 out of 5 in the Bovine Atp Synthase Monomer State 2 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Atp Synthase Monomer State 2 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:20.7 occ:1.00 OG1 C:THR176 2.2 18.3 1.0 O C:HOH702 2.2 14.4 1.0 O2B C:ATP600 2.2 22.6 1.0 O C:HOH703 2.2 21.3 1.0 O2G C:ATP600 2.2 22.6 0.8 O C:HOH701 2.2 23.5 1.0 HB C:THR176 2.9 18.3 1.0 CB C:THR176 3.1 18.3 1.0 PG C:ATP600 3.3 22.6 0.8 PB C:ATP600 3.3 22.6 1.0 O3B C:ATP600 3.3 22.6 1.0 H C:THR176 3.5 18.3 1.0 O3G C:ATP600 3.7 22.6 0.8 HG21 C:THR176 3.8 18.3 1.0 OD2 C:ASP269 3.8 15.2 1.0 O1A C:ATP600 3.9 22.6 1.0 CG2 C:THR176 4.0 18.3 1.0 N C:THR176 4.1 18.3 1.0 CA C:THR176 4.2 18.3 1.0 O3A C:ATP600 4.4 22.6 1.0 O1B C:ATP600 4.4 22.6 1.0 PA C:ATP600 4.5 22.6 1.0 O1G C:ATP600 4.6 22.6 0.8 HA C:THR176 4.6 18.3 1.0 HG22 C:THR176 4.6 18.3 1.0 HE22 C:GLN208 4.6 17.4 1.0 HE3 C:LYS175 4.6 17.4 1.0 HG23 C:THR176 4.7 18.3 1.0 HH12 F:ARG356 4.7 23.8 1.0 HB2 C:LYS175 4.7 17.4 1.0 CG C:ASP269 4.8 15.2 1.0 O2A C:ATP600 4.8 22.6 1.0 HG21 C:THR212 4.9 20.8 1.0

Magnesium binding site 4 out of 5 in the Bovine Atp Synthase Monomer State 2 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Atp Synthase Monomer State 2 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:16.8 occ:1.00 O2B D:ADP600 2.2 21.8 1.0 O D:HOH702 2.2 20.6 1.0 O D:HOH701 2.2 23.8 1.0 OG1 D:THR163 2.2 19.1 1.0 O D:HOH703 2.2 19.7 1.0 O D:HOH704 2.2 15.3 1.0 HH12 D:ARG189 3.4 20.1 1.0 PB D:ADP600 3.4 21.8 1.0 CB D:THR163 3.4 19.1 1.0 OE2 D:GLU192 3.5 22.6 1.0 HB D:THR163 3.5 19.1 1.0 O3A D:ADP600 3.6 21.8 1.0 OE1 D:GLU192 3.8 22.6 1.0 NH1 D:ARG189 3.9 20.1 1.0 HH11 D:ARG189 3.9 20.1 1.0 H D:THR163 3.9 19.1 1.0 HG21 D:THR163 4.0 19.1 1.0 CD D:GLU192 4.1 22.6 1.0 O3B D:ADP600 4.1 21.8 1.0 HG3 D:GLU188 4.2 20.2 1.0 HE2 D:LYS162 4.2 16.1 1.0 CG2 D:THR163 4.3 19.1 1.0 HB2 D:LYS162 4.4 16.1 1.0 OD2 D:ASP256 4.4 16.5 1.0 N D:THR163 4.4 19.1 1.0 CA D:THR163 4.4 19.1 1.0 CD D:GLU188 4.5 20.2 1.0 OE1 D:GLU188 4.5 20.2 1.0 OD1 D:ASP256 4.5 16.5 1.0 HA D:THR163 4.6 19.1 1.0 O1B D:ADP600 4.6 21.8 1.0 HZ1 D:LYS162 4.7 16.1 1.0 OE2 D:GLU188 4.7 20.2 1.0 HZ3 D:LYS162 4.8 16.1 1.0 HG23 D:THR163 4.8 19.1 1.0 HB3 D:GLU188 4.8 20.2 1.0 CG D:GLU188 4.8 20.2 1.0 PA D:ADP600 4.8 21.8 1.0 CG D:ASP256 4.9 16.5 1.0 CZ D:ARG189 4.9 20.1 1.0 HH22 D:ARG189 5.0 20.1 1.0 O2A D:ADP600 5.0 21.8 1.0

Magnesium binding site 5 out of 5 in the Bovine Atp Synthase Monomer State 2 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Atp Synthase Monomer State 2 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:17.3 occ:1.00 OG1 F:THR163 2.2 18.4 1.0 O2B F:ADP600 2.2 23.0 1.0 O F:HOH703 2.2 19.5 1.0 O F:HOH701 2.2 26.8 1.0 O F:HOH704 2.2 14.5 1.0 O F:HOH702 2.2 22.2 1.0 HH12 F:ARG189 2.7 19.6 1.0 OE2 F:GLU188 2.8 19.9 1.0 HB F:THR163 3.3 18.4 1.0 CB F:THR163 3.3 18.4 1.0 O3A F:ADP600 3.3 23.0 1.0 PB F:ADP600 3.3 23.0 1.0 NH1 F:ARG189 3.4 19.6 1.0 HH11 F:ARG189 3.5 19.6 1.0 HG21 F:THR163 3.7 18.4 1.0 CD F:GLU188 3.7 19.9 1.0 H F:THR163 3.9 18.4 1.0 OE1 F:GLU192 4.0 20.2 1.0 CG2 F:THR163 4.1 18.4 1.0 OE2 F:GLU192 4.1 20.2 1.0 O3B F:ADP600 4.2 23.0 1.0 OE1 F:GLU188 4.3 19.9 1.0 N F:THR163 4.4 18.4 1.0 CA F:THR163 4.4 18.4 1.0 O2A F:ADP600 4.4 23.0 1.0 CD F:GLU192 4.4 20.2 1.0 HG2 F:GLU188 4.4 19.9 1.0 O1B F:ADP600 4.4 23.0 1.0 OD2 F:ASP256 4.5 16.3 1.0 PA F:ADP600 4.5 23.0 1.0 HB2 F:LYS162 4.5 16.7 1.0 HG23 F:THR163 4.5 18.4 1.0 HH22 F:ARG189 4.5 19.6 1.0 HH22 B:ARG373 4.6 23.9 1.0 CG F:GLU188 4.6 19.9 1.0 CZ F:ARG189 4.6 19.6 1.0 HA F:THR163 4.7 18.4 1.0 HG22 F:THR163 4.8 18.4 1.0 HG3 F:GLU188 4.8 19.9 1.0 HE2 F:LYS162 4.8 16.7 1.0 OD1 F:ASP256 4.8 16.3 1.0 HZ3 F:LYS162 4.9 16.7 1.0 HD22 F:ASN257 4.9 15.6 1.0

T.E.Spikes, M.G.Montgomery, J.E.Walker. Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117