Magnesium in PDB 6zqn: Bovine Atp Synthase Monomer State 3 (Combined)
Enzymatic activity of Bovine Atp Synthase Monomer State 3 (Combined)
All present enzymatic activity of Bovine Atp Synthase Monomer State 3 (Combined):
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Bovine Atp Synthase Monomer State 3 (Combined)
(pdb code 6zqn). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Bovine Atp Synthase Monomer State 3 (Combined), PDB code: 6zqn:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 6zqn
Go back to
Magnesium Binding Sites List in 6zqn
Magnesium binding site 1 out
of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:23.7
occ:1.00
|
O
|
A:HOH701
|
2.2
|
18.9
|
1.0
|
O
|
A:HOH703
|
2.2
|
21.3
|
1.0
|
O2B
|
A:ATP600
|
2.2
|
25.2
|
1.0
|
O2G
|
A:ATP600
|
2.2
|
25.2
|
1.0
|
O
|
A:HOH702
|
2.2
|
31.5
|
1.0
|
OG1
|
A:THR176
|
2.2
|
22.3
|
1.0
|
HB
|
A:THR176
|
2.7
|
22.3
|
1.0
|
CB
|
A:THR176
|
3.0
|
22.3
|
1.0
|
PG
|
A:ATP600
|
3.3
|
25.2
|
1.0
|
PB
|
A:ATP600
|
3.4
|
25.2
|
1.0
|
H
|
A:THR176
|
3.4
|
22.3
|
1.0
|
O3B
|
A:ATP600
|
3.5
|
25.2
|
1.0
|
HG21
|
A:THR176
|
3.7
|
22.3
|
1.0
|
OD2
|
A:ASP269
|
3.9
|
17.8
|
1.0
|
O1G
|
A:ATP600
|
3.9
|
25.2
|
1.0
|
CG2
|
A:THR176
|
3.9
|
22.3
|
1.0
|
O2A
|
A:ATP600
|
4.0
|
25.2
|
1.0
|
N
|
A:THR176
|
4.1
|
22.3
|
1.0
|
CA
|
A:THR176
|
4.1
|
22.3
|
1.0
|
OD1
|
A:ASP269
|
4.2
|
17.8
|
1.0
|
O1B
|
A:ATP600
|
4.3
|
25.2
|
1.0
|
OE1
|
A:GLN208
|
4.4
|
19.6
|
1.0
|
CG
|
A:ASP269
|
4.5
|
17.8
|
1.0
|
HG22
|
A:THR176
|
4.5
|
22.3
|
1.0
|
HA
|
A:THR176
|
4.5
|
22.3
|
1.0
|
O3A
|
A:ATP600
|
4.5
|
25.2
|
1.0
|
HG23
|
A:THR176
|
4.6
|
22.3
|
1.0
|
O3G
|
A:ATP600
|
4.6
|
25.2
|
1.0
|
PA
|
A:ATP600
|
4.7
|
25.2
|
1.0
|
HB2
|
A:LYS175
|
4.7
|
20.0
|
1.0
|
HE2
|
A:LYS175
|
4.7
|
20.0
|
1.0
|
HH
|
A:TYR203
|
4.9
|
18.1
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 6zqn
Go back to
Magnesium Binding Sites List in 6zqn
Magnesium binding site 2 out
of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:23.0
occ:1.00
|
O
|
B:HOH702
|
2.2
|
15.9
|
1.0
|
O2B
|
B:ATP600
|
2.2
|
25.4
|
1.0
|
OG1
|
B:THR176
|
2.2
|
19.6
|
1.0
|
O2G
|
B:ATP600
|
2.2
|
25.4
|
0.8
|
O
|
B:HOH701
|
2.2
|
32.8
|
1.0
|
O
|
B:HOH703
|
2.2
|
16.0
|
1.0
|
PG
|
B:ATP600
|
3.0
|
25.4
|
0.8
|
O1G
|
B:ATP600
|
3.1
|
25.4
|
0.8
|
HE22
|
B:GLN208
|
3.2
|
16.9
|
1.0
|
HB
|
B:THR176
|
3.2
|
19.6
|
1.0
|
CB
|
B:THR176
|
3.3
|
19.6
|
1.0
|
PB
|
B:ATP600
|
3.3
|
25.4
|
1.0
|
H
|
B:THR176
|
3.4
|
19.6
|
1.0
|
O3B
|
B:ATP600
|
3.5
|
25.4
|
1.0
|
NE2
|
B:GLN208
|
4.0
|
16.9
|
1.0
|
O3A
|
B:ATP600
|
4.0
|
25.4
|
1.0
|
HG21
|
B:THR176
|
4.1
|
19.6
|
1.0
|
N
|
B:THR176
|
4.1
|
19.6
|
1.0
|
OD1
|
B:ASP269
|
4.1
|
15.7
|
1.0
|
CA
|
B:THR176
|
4.2
|
19.6
|
1.0
|
CG2
|
B:THR176
|
4.3
|
19.6
|
1.0
|
HB2
|
B:LYS175
|
4.3
|
18.1
|
1.0
|
HE21
|
B:GLN208
|
4.3
|
16.9
|
1.0
|
OD2
|
B:ASP269
|
4.3
|
15.7
|
1.0
|
HH12
|
E:ARG356
|
4.4
|
27.7
|
1.0
|
O3G
|
B:ATP600
|
4.4
|
25.4
|
0.8
|
HA
|
B:THR176
|
4.5
|
19.6
|
1.0
|
HE2
|
B:LYS175
|
4.5
|
18.1
|
1.0
|
O1B
|
B:ATP600
|
4.7
|
25.4
|
1.0
|
O2A
|
B:ATP600
|
4.7
|
25.4
|
1.0
|
CG
|
B:ASP269
|
4.7
|
15.7
|
1.0
|
PA
|
B:ATP600
|
4.7
|
25.4
|
1.0
|
HG23
|
B:THR176
|
4.8
|
19.6
|
1.0
|
O1A
|
B:ATP600
|
4.8
|
25.4
|
1.0
|
HH22
|
E:ARG356
|
4.9
|
27.7
|
1.0
|
CD
|
B:GLN208
|
4.9
|
16.9
|
1.0
|
OE2
|
B:GLU328
|
4.9
|
18.7
|
1.0
|
OE1
|
B:GLN208
|
4.9
|
16.9
|
1.0
|
HG22
|
B:THR176
|
5.0
|
19.6
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 6zqn
Go back to
Magnesium Binding Sites List in 6zqn
Magnesium binding site 3 out
of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:25.8
occ:1.00
|
O
|
C:HOH701
|
2.2
|
19.4
|
1.0
|
OG1
|
C:THR176
|
2.2
|
18.7
|
1.0
|
O
|
C:HOH703
|
2.2
|
14.2
|
1.0
|
O2B
|
C:ATP600
|
2.2
|
21.7
|
1.0
|
O2G
|
C:ATP600
|
2.2
|
21.7
|
0.8
|
O
|
C:HOH702
|
2.2
|
23.7
|
1.0
|
HB
|
C:THR176
|
3.1
|
18.7
|
1.0
|
O3B
|
C:ATP600
|
3.2
|
21.7
|
1.0
|
CB
|
C:THR176
|
3.2
|
18.7
|
1.0
|
PG
|
C:ATP600
|
3.2
|
21.7
|
0.8
|
PB
|
C:ATP600
|
3.3
|
21.7
|
1.0
|
H
|
C:THR176
|
3.4
|
18.7
|
1.0
|
HE21
|
C:GLN208
|
3.6
|
18.6
|
1.0
|
O3G
|
C:ATP600
|
3.8
|
21.7
|
0.8
|
HG21
|
C:THR176
|
3.9
|
18.7
|
1.0
|
O1A
|
C:ATP600
|
3.9
|
21.7
|
1.0
|
HE22
|
C:GLN208
|
4.1
|
18.6
|
1.0
|
N
|
C:THR176
|
4.1
|
18.7
|
1.0
|
HH21
|
F:ARG356
|
4.1
|
21.6
|
1.0
|
NE2
|
C:GLN208
|
4.2
|
18.6
|
1.0
|
CG2
|
C:THR176
|
4.2
|
18.7
|
1.0
|
O3A
|
C:ATP600
|
4.2
|
21.7
|
1.0
|
CA
|
C:THR176
|
4.3
|
18.7
|
1.0
|
OD1
|
C:ASP269
|
4.3
|
15.5
|
1.0
|
OD2
|
C:ASP269
|
4.4
|
15.5
|
1.0
|
O1B
|
C:ATP600
|
4.4
|
21.7
|
1.0
|
PA
|
C:ATP600
|
4.4
|
21.7
|
1.0
|
O1G
|
C:ATP600
|
4.5
|
21.7
|
0.8
|
HB2
|
C:LYS175
|
4.5
|
17.3
|
1.0
|
O2A
|
C:ATP600
|
4.6
|
21.7
|
1.0
|
HG23
|
C:THR176
|
4.7
|
18.7
|
1.0
|
HA
|
C:THR176
|
4.7
|
18.7
|
1.0
|
CG
|
C:ASP269
|
4.8
|
15.5
|
1.0
|
NH2
|
F:ARG356
|
4.8
|
21.6
|
1.0
|
HG22
|
C:THR176
|
4.9
|
18.7
|
1.0
|
HE2
|
C:LYS175
|
4.9
|
17.3
|
1.0
|
HH
|
C:TYR203
|
5.0
|
16.1
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 6zqn
Go back to
Magnesium Binding Sites List in 6zqn
Magnesium binding site 4 out
of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:24.8
occ:1.00
|
O
|
D:HOH701
|
2.2
|
31.1
|
1.0
|
OG1
|
D:THR163
|
2.2
|
22.3
|
1.0
|
O2B
|
D:ADP600
|
2.2
|
26.1
|
1.0
|
O
|
D:HOH703
|
2.2
|
33.2
|
1.0
|
O
|
D:HOH704
|
2.2
|
20.8
|
1.0
|
O
|
D:HOH702
|
2.2
|
24.4
|
1.0
|
OE2
|
D:GLU188
|
2.6
|
20.8
|
1.0
|
HH21
|
D:ARG189
|
3.1
|
20.8
|
1.0
|
CB
|
D:THR163
|
3.3
|
22.3
|
1.0
|
HB
|
D:THR163
|
3.3
|
22.3
|
1.0
|
OE2
|
D:GLU192
|
3.3
|
22.4
|
1.0
|
PB
|
D:ADP600
|
3.6
|
26.1
|
1.0
|
CD
|
D:GLU188
|
3.8
|
20.8
|
1.0
|
HE
|
D:ARG189
|
3.9
|
20.8
|
1.0
|
H
|
D:THR163
|
3.9
|
22.3
|
1.0
|
NH2
|
D:ARG189
|
4.0
|
20.8
|
1.0
|
OE1
|
D:GLU192
|
4.0
|
22.4
|
1.0
|
HG21
|
D:THR163
|
4.0
|
22.3
|
1.0
|
CD
|
D:GLU192
|
4.0
|
22.4
|
1.0
|
O2A
|
D:ADP600
|
4.2
|
26.1
|
1.0
|
CG2
|
D:THR163
|
4.3
|
22.3
|
1.0
|
O3B
|
D:ADP600
|
4.3
|
26.1
|
1.0
|
CA
|
D:THR163
|
4.3
|
22.3
|
1.0
|
N
|
D:THR163
|
4.4
|
22.3
|
1.0
|
HH22
|
D:ARG189
|
4.4
|
20.8
|
1.0
|
O3A
|
D:ADP600
|
4.4
|
26.1
|
1.0
|
OD1
|
D:ASP256
|
4.5
|
17.1
|
1.0
|
OD2
|
D:ASP256
|
4.5
|
17.1
|
1.0
|
HA
|
D:THR163
|
4.5
|
22.3
|
1.0
|
HG3
|
D:GLU188
|
4.5
|
20.8
|
1.0
|
NE
|
D:ARG189
|
4.6
|
20.8
|
1.0
|
O1B
|
D:ADP600
|
4.6
|
26.1
|
1.0
|
HB2
|
D:LYS162
|
4.6
|
19.1
|
1.0
|
OE1
|
D:GLU188
|
4.6
|
20.8
|
1.0
|
PA
|
D:ADP600
|
4.7
|
26.1
|
1.0
|
CZ
|
D:ARG189
|
4.7
|
20.8
|
1.0
|
CG
|
D:GLU188
|
4.8
|
20.8
|
1.0
|
HB3
|
D:GLU188
|
4.8
|
20.8
|
1.0
|
HG23
|
D:THR163
|
4.8
|
22.3
|
1.0
|
HZ3
|
D:LYS162
|
4.8
|
19.1
|
1.0
|
HZ1
|
D:LYS162
|
4.8
|
19.1
|
1.0
|
HE2
|
D:LYS162
|
4.9
|
19.1
|
1.0
|
CG
|
D:ASP256
|
4.9
|
17.1
|
1.0
|
HG22
|
D:THR163
|
5.0
|
22.3
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 6zqn
Go back to
Magnesium Binding Sites List in 6zqn
Magnesium binding site 5 out
of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:17.6
occ:1.00
|
OG1
|
F:THR163
|
2.2
|
20.4
|
1.0
|
O2B
|
F:ADP600
|
2.2
|
23.4
|
1.0
|
O
|
F:HOH701
|
2.2
|
24.2
|
1.0
|
O
|
F:HOH702
|
2.2
|
29.8
|
1.0
|
O
|
F:HOH704
|
2.2
|
17.4
|
1.0
|
O
|
F:HOH703
|
2.2
|
22.0
|
1.0
|
OE2
|
F:GLU188
|
2.5
|
20.3
|
1.0
|
HH12
|
F:ARG189
|
2.8
|
19.9
|
1.0
|
CB
|
F:THR163
|
3.4
|
20.4
|
1.0
|
HB
|
F:THR163
|
3.4
|
20.4
|
1.0
|
NH1
|
F:ARG189
|
3.5
|
19.9
|
1.0
|
HH11
|
F:ARG189
|
3.5
|
19.9
|
1.0
|
OE1
|
F:GLU192
|
3.6
|
21.3
|
1.0
|
PB
|
F:ADP600
|
3.7
|
23.4
|
1.0
|
CD
|
F:GLU188
|
3.7
|
20.3
|
1.0
|
HG21
|
F:THR163
|
3.9
|
20.4
|
1.0
|
OE2
|
F:GLU192
|
4.0
|
21.3
|
1.0
|
H
|
F:THR163
|
4.0
|
20.4
|
1.0
|
HG3
|
F:GLU188
|
4.1
|
20.3
|
1.0
|
OD1
|
F:ASP256
|
4.2
|
16.4
|
1.0
|
CD
|
F:GLU192
|
4.2
|
21.3
|
1.0
|
CG2
|
F:THR163
|
4.2
|
20.4
|
1.0
|
O3A
|
F:ADP600
|
4.3
|
23.4
|
1.0
|
OD2
|
F:ASP256
|
4.3
|
16.4
|
1.0
|
O2A
|
F:ADP600
|
4.3
|
23.4
|
1.0
|
O3B
|
F:ADP600
|
4.4
|
23.4
|
1.0
|
CA
|
F:THR163
|
4.4
|
20.4
|
1.0
|
CG
|
F:GLU188
|
4.5
|
20.3
|
1.0
|
N
|
F:THR163
|
4.5
|
20.4
|
1.0
|
HA
|
F:THR163
|
4.5
|
20.4
|
1.0
|
OE1
|
F:GLU188
|
4.6
|
20.3
|
1.0
|
HB3
|
F:GLU188
|
4.6
|
20.3
|
1.0
|
HE2
|
F:LYS162
|
4.6
|
16.4
|
1.0
|
O1B
|
F:ADP600
|
4.6
|
23.4
|
1.0
|
HH22
|
F:ARG189
|
4.7
|
19.9
|
1.0
|
HB2
|
F:LYS162
|
4.7
|
16.4
|
1.0
|
CZ
|
F:ARG189
|
4.7
|
19.9
|
1.0
|
CG
|
F:ASP256
|
4.7
|
16.4
|
1.0
|
HZ1
|
F:LYS162
|
4.7
|
16.4
|
1.0
|
HZ3
|
F:LYS162
|
4.7
|
16.4
|
1.0
|
HG23
|
F:THR163
|
4.8
|
20.4
|
1.0
|
PA
|
F:ADP600
|
4.8
|
23.4
|
1.0
|
HD21
|
F:ASN257
|
4.8
|
15.2
|
1.0
|
HH22
|
B:ARG373
|
4.9
|
23.4
|
1.0
|
HG22
|
F:THR163
|
5.0
|
20.4
|
1.0
|
|
Reference:
T.E.Spikes,
M.G.Montgomery,
J.E.Walker.
Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117
Page generated: Wed Oct 2 02:35:21 2024
|