Magnesium in PDB 6zqn: Bovine Atp Synthase Monomer State 3 (Combined)

All present enzymatic activity of Bovine Atp Synthase Monomer State 3 (Combined):
7.1.2.2;

The binding sites of Magnesium atom in the Bovine Atp Synthase Monomer State 3 (Combined) (pdb code 6zqn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Atp Synthase Monomer State 3 (Combined), PDB code: 6zqn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:23.7 occ:1.00 O A:HOH701 2.2 18.9 1.0 O A:HOH703 2.2 21.3 1.0 O2B A:ATP600 2.2 25.2 1.0 O2G A:ATP600 2.2 25.2 1.0 O A:HOH702 2.2 31.5 1.0 OG1 A:THR176 2.2 22.3 1.0 HB A:THR176 2.7 22.3 1.0 CB A:THR176 3.0 22.3 1.0 PG A:ATP600 3.3 25.2 1.0 PB A:ATP600 3.4 25.2 1.0 H A:THR176 3.4 22.3 1.0 O3B A:ATP600 3.5 25.2 1.0 HG21 A:THR176 3.7 22.3 1.0 OD2 A:ASP269 3.9 17.8 1.0 O1G A:ATP600 3.9 25.2 1.0 CG2 A:THR176 3.9 22.3 1.0 O2A A:ATP600 4.0 25.2 1.0 N A:THR176 4.1 22.3 1.0 CA A:THR176 4.1 22.3 1.0 OD1 A:ASP269 4.2 17.8 1.0 O1B A:ATP600 4.3 25.2 1.0 OE1 A:GLN208 4.4 19.6 1.0 CG A:ASP269 4.5 17.8 1.0 HG22 A:THR176 4.5 22.3 1.0 HA A:THR176 4.5 22.3 1.0 O3A A:ATP600 4.5 25.2 1.0 HG23 A:THR176 4.6 22.3 1.0 O3G A:ATP600 4.6 25.2 1.0 PA A:ATP600 4.7 25.2 1.0 HB2 A:LYS175 4.7 20.0 1.0 HE2 A:LYS175 4.7 20.0 1.0 HH A:TYR203 4.9 18.1 1.0

Magnesium binding site 2 out of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:23.0 occ:1.00 O B:HOH702 2.2 15.9 1.0 O2B B:ATP600 2.2 25.4 1.0 OG1 B:THR176 2.2 19.6 1.0 O2G B:ATP600 2.2 25.4 0.8 O B:HOH701 2.2 32.8 1.0 O B:HOH703 2.2 16.0 1.0 PG B:ATP600 3.0 25.4 0.8 O1G B:ATP600 3.1 25.4 0.8 HE22 B:GLN208 3.2 16.9 1.0 HB B:THR176 3.2 19.6 1.0 CB B:THR176 3.3 19.6 1.0 PB B:ATP600 3.3 25.4 1.0 H B:THR176 3.4 19.6 1.0 O3B B:ATP600 3.5 25.4 1.0 NE2 B:GLN208 4.0 16.9 1.0 O3A B:ATP600 4.0 25.4 1.0 HG21 B:THR176 4.1 19.6 1.0 N B:THR176 4.1 19.6 1.0 OD1 B:ASP269 4.1 15.7 1.0 CA B:THR176 4.2 19.6 1.0 CG2 B:THR176 4.3 19.6 1.0 HB2 B:LYS175 4.3 18.1 1.0 HE21 B:GLN208 4.3 16.9 1.0 OD2 B:ASP269 4.3 15.7 1.0 HH12 E:ARG356 4.4 27.7 1.0 O3G B:ATP600 4.4 25.4 0.8 HA B:THR176 4.5 19.6 1.0 HE2 B:LYS175 4.5 18.1 1.0 O1B B:ATP600 4.7 25.4 1.0 O2A B:ATP600 4.7 25.4 1.0 CG B:ASP269 4.7 15.7 1.0 PA B:ATP600 4.7 25.4 1.0 HG23 B:THR176 4.8 19.6 1.0 O1A B:ATP600 4.8 25.4 1.0 HH22 E:ARG356 4.9 27.7 1.0 CD B:GLN208 4.9 16.9 1.0 OE2 B:GLU328 4.9 18.7 1.0 OE1 B:GLN208 4.9 16.9 1.0 HG22 B:THR176 5.0 19.6 1.0

Magnesium binding site 3 out of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:25.8 occ:1.00 O C:HOH701 2.2 19.4 1.0 OG1 C:THR176 2.2 18.7 1.0 O C:HOH703 2.2 14.2 1.0 O2B C:ATP600 2.2 21.7 1.0 O2G C:ATP600 2.2 21.7 0.8 O C:HOH702 2.2 23.7 1.0 HB C:THR176 3.1 18.7 1.0 O3B C:ATP600 3.2 21.7 1.0 CB C:THR176 3.2 18.7 1.0 PG C:ATP600 3.2 21.7 0.8 PB C:ATP600 3.3 21.7 1.0 H C:THR176 3.4 18.7 1.0 HE21 C:GLN208 3.6 18.6 1.0 O3G C:ATP600 3.8 21.7 0.8 HG21 C:THR176 3.9 18.7 1.0 O1A C:ATP600 3.9 21.7 1.0 HE22 C:GLN208 4.1 18.6 1.0 N C:THR176 4.1 18.7 1.0 HH21 F:ARG356 4.1 21.6 1.0 NE2 C:GLN208 4.2 18.6 1.0 CG2 C:THR176 4.2 18.7 1.0 O3A C:ATP600 4.2 21.7 1.0 CA C:THR176 4.3 18.7 1.0 OD1 C:ASP269 4.3 15.5 1.0 OD2 C:ASP269 4.4 15.5 1.0 O1B C:ATP600 4.4 21.7 1.0 PA C:ATP600 4.4 21.7 1.0 O1G C:ATP600 4.5 21.7 0.8 HB2 C:LYS175 4.5 17.3 1.0 O2A C:ATP600 4.6 21.7 1.0 HG23 C:THR176 4.7 18.7 1.0 HA C:THR176 4.7 18.7 1.0 CG C:ASP269 4.8 15.5 1.0 NH2 F:ARG356 4.8 21.6 1.0 HG22 C:THR176 4.9 18.7 1.0 HE2 C:LYS175 4.9 17.3 1.0 HH C:TYR203 5.0 16.1 1.0

Magnesium binding site 4 out of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:24.8 occ:1.00 O D:HOH701 2.2 31.1 1.0 OG1 D:THR163 2.2 22.3 1.0 O2B D:ADP600 2.2 26.1 1.0 O D:HOH703 2.2 33.2 1.0 O D:HOH704 2.2 20.8 1.0 O D:HOH702 2.2 24.4 1.0 OE2 D:GLU188 2.6 20.8 1.0 HH21 D:ARG189 3.1 20.8 1.0 CB D:THR163 3.3 22.3 1.0 HB D:THR163 3.3 22.3 1.0 OE2 D:GLU192 3.3 22.4 1.0 PB D:ADP600 3.6 26.1 1.0 CD D:GLU188 3.8 20.8 1.0 HE D:ARG189 3.9 20.8 1.0 H D:THR163 3.9 22.3 1.0 NH2 D:ARG189 4.0 20.8 1.0 OE1 D:GLU192 4.0 22.4 1.0 HG21 D:THR163 4.0 22.3 1.0 CD D:GLU192 4.0 22.4 1.0 O2A D:ADP600 4.2 26.1 1.0 CG2 D:THR163 4.3 22.3 1.0 O3B D:ADP600 4.3 26.1 1.0 CA D:THR163 4.3 22.3 1.0 N D:THR163 4.4 22.3 1.0 HH22 D:ARG189 4.4 20.8 1.0 O3A D:ADP600 4.4 26.1 1.0 OD1 D:ASP256 4.5 17.1 1.0 OD2 D:ASP256 4.5 17.1 1.0 HA D:THR163 4.5 22.3 1.0 HG3 D:GLU188 4.5 20.8 1.0 NE D:ARG189 4.6 20.8 1.0 O1B D:ADP600 4.6 26.1 1.0 HB2 D:LYS162 4.6 19.1 1.0 OE1 D:GLU188 4.6 20.8 1.0 PA D:ADP600 4.7 26.1 1.0 CZ D:ARG189 4.7 20.8 1.0 CG D:GLU188 4.8 20.8 1.0 HB3 D:GLU188 4.8 20.8 1.0 HG23 D:THR163 4.8 22.3 1.0 HZ3 D:LYS162 4.8 19.1 1.0 HZ1 D:LYS162 4.8 19.1 1.0 HE2 D:LYS162 4.9 19.1 1.0 CG D:ASP256 4.9 17.1 1.0 HG22 D:THR163 5.0 22.3 1.0

Magnesium binding site 5 out of 5 in the Bovine Atp Synthase Monomer State 3 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Atp Synthase Monomer State 3 (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:17.6 occ:1.00 OG1 F:THR163 2.2 20.4 1.0 O2B F:ADP600 2.2 23.4 1.0 O F:HOH701 2.2 24.2 1.0 O F:HOH702 2.2 29.8 1.0 O F:HOH704 2.2 17.4 1.0 O F:HOH703 2.2 22.0 1.0 OE2 F:GLU188 2.5 20.3 1.0 HH12 F:ARG189 2.8 19.9 1.0 CB F:THR163 3.4 20.4 1.0 HB F:THR163 3.4 20.4 1.0 NH1 F:ARG189 3.5 19.9 1.0 HH11 F:ARG189 3.5 19.9 1.0 OE1 F:GLU192 3.6 21.3 1.0 PB F:ADP600 3.7 23.4 1.0 CD F:GLU188 3.7 20.3 1.0 HG21 F:THR163 3.9 20.4 1.0 OE2 F:GLU192 4.0 21.3 1.0 H F:THR163 4.0 20.4 1.0 HG3 F:GLU188 4.1 20.3 1.0 OD1 F:ASP256 4.2 16.4 1.0 CD F:GLU192 4.2 21.3 1.0 CG2 F:THR163 4.2 20.4 1.0 O3A F:ADP600 4.3 23.4 1.0 OD2 F:ASP256 4.3 16.4 1.0 O2A F:ADP600 4.3 23.4 1.0 O3B F:ADP600 4.4 23.4 1.0 CA F:THR163 4.4 20.4 1.0 CG F:GLU188 4.5 20.3 1.0 N F:THR163 4.5 20.4 1.0 HA F:THR163 4.5 20.4 1.0 OE1 F:GLU188 4.6 20.3 1.0 HB3 F:GLU188 4.6 20.3 1.0 HE2 F:LYS162 4.6 16.4 1.0 O1B F:ADP600 4.6 23.4 1.0 HH22 F:ARG189 4.7 19.9 1.0 HB2 F:LYS162 4.7 16.4 1.0 CZ F:ARG189 4.7 19.9 1.0 CG F:ASP256 4.7 16.4 1.0 HZ1 F:LYS162 4.7 16.4 1.0 HZ3 F:LYS162 4.7 16.4 1.0 HG23 F:THR163 4.8 20.4 1.0 PA F:ADP600 4.8 23.4 1.0 HD21 F:ASN257 4.8 15.2 1.0 HH22 B:ARG373 4.9 23.4 1.0 HG22 F:THR163 5.0 20.4 1.0

T.E.Spikes, M.G.Montgomery, J.E.Walker. Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117