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Magnesium in PDB 6zt3: N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp

Enzymatic activity of N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp

All present enzymatic activity of N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp:
5.99.1.3;

Protein crystallography data

The structure of N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp, PDB code: 6zt3 was solved by L.Feng, J.E.A.Mundy, C.E.M.Stevenson, L.A.Mitchenall, D.M.Lawson, K.Mi, A.Maxwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.69 / 1.56
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.985, 76.985, 261.476, 90, 90, 120
R / Rfree (%) 14.7 / 19.4

Other elements in 6zt3:

The structure of N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp also contains other interesting chemical elements:

Potassium (K) 2 atoms
Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp (pdb code 6zt3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp, PDB code: 6zt3:

Magnesium binding site 1 out of 1 in 6zt3

Go back to Magnesium Binding Sites List in 6zt3
Magnesium binding site 1 out of 1 in the N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of N-Terminal 47 kDa Fragment of the Mycobacterium Smegmatis Dna Gyrase B Subunit Complexed with Adpnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:18.8
occ:1.00
OD1 A:ASN52 2.0 16.1 1.0
O A:HOH629 2.1 17.9 1.0
O3G A:ANP501 2.1 17.7 1.0
O2B A:ANP501 2.2 16.3 1.0
O A:HOH705 2.2 17.9 1.0
O2A A:ANP501 2.2 16.4 1.0
CG A:ASN52 3.0 16.0 1.0
PB A:ANP501 3.2 17.9 1.0
PA A:ANP501 3.3 15.0 1.0
PG A:ANP501 3.4 16.6 1.0
ND2 A:ASN52 3.4 15.1 1.0
O3A A:ANP501 3.4 13.7 1.0
N3B A:ANP501 3.5 16.8 1.0
O A:HOH713 3.9 17.1 1.0
NZ A:LYS108 4.0 16.6 1.0
O5' A:ANP501 4.0 16.0 1.0
OE1 A:GLU48 4.2 18.8 1.0
O A:GLU48 4.2 14.4 1.0
O1G A:ANP501 4.3 14.3 1.0
CA A:GLY119 4.3 14.8 1.0
CB A:ASN52 4.4 15.7 1.0
O2G A:ANP501 4.4 16.4 1.0
O1B A:ANP501 4.5 18.1 1.0
O1A A:ANP501 4.5 15.2 1.0
CA A:GLY124 4.6 15.8 1.0
CA A:ASN52 4.7 15.4 1.0
N A:ASN52 4.7 15.2 1.0
N A:GLY124 4.8 15.7 1.0
OD2 A:ASP55 4.9 16.8 1.0

Reference:

L.Feng, J.E.A.Mundy, C.E.M.Stevenson, L.A.Mitchenall, D.M.Lawson, K.Mi, A.Maxwell. The Pentapeptide-Repeat Protein, Mfpa, Interacts with Mycobacterial Dna Gyrase As A Dna T-Segment Mimic To Be Published.
Page generated: Wed Oct 2 02:39:31 2024

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