Magnesium in PDB 6zvd: 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation

Protein crystallography data

The structure of 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation, PDB code: 6zvd was solved by A.Ballone, R.A.Lau, F.P.A.Zweipfenning, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.17 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.35, 111.984, 62.427, 90, 90, 90
R / Rfree (%) 17.4 / 23.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation (pdb code 6zvd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation, PDB code: 6zvd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6zvd

Go back to Magnesium Binding Sites List in 6zvd
Magnesium binding site 1 out of 2 in the 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:21.6
occ:0.00
OE2 A:GLU188 2.1 13.9 1.0
CD A:GLU188 3.3 11.7 1.0
CG A:GLU188 3.9 11.0 1.0
OE1 A:GLU188 4.4 11.2 1.0
O A:HOH561 4.5 29.0 1.0

Magnesium binding site 2 out of 2 in 6zvd

Go back to Magnesium Binding Sites List in 6zvd
Magnesium binding site 2 out of 2 in the 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 14-3-3 Sigma in Complex with Phosphorylated GAB2PT391 Peptide - 96H Incubation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:20.2
occ:0.00
O A:ALA-3 2.3 34.9 1.0
OG A:SER0 2.8 15.8 1.0
N A:SER0 3.2 14.7 1.0
C A:ALA-3 3.3 33.7 1.0
CB A:SER0 3.5 15.2 1.0
C A:MET-2 3.5 18.0 1.0
CA A:MET-2 3.5 21.7 1.0
CA A:SER0 3.7 14.7 1.0
N A:GLY-1 3.8 16.2 1.0
N A:MET-2 3.8 27.4 1.0
N A:MET1 3.8 13.4 1.0
O A:MET-2 3.9 16.2 1.0
C A:SER0 4.0 14.2 1.0
C A:GLY-1 4.3 15.4 1.0
O A:HOH467 4.4 22.8 1.0
CA A:ALA-3 4.5 40.1 1.0
CA A:GLY-1 4.6 15.6 1.0
CB A:MET1 4.8 14.6 1.0
CA A:MET1 4.9 13.5 1.0
CB A:MET-2 4.9 21.6 1.0
O A:SER0 5.0 14.9 1.0

Reference:

A.Ballone, R.A.Lau, F.P.A.Zweipfenning, C.Ottmann. A New Soaking Procedure For X-Ray Crystallography Structural Determination of Protein-Peptide Complexes To Be Published.
Page generated: Sat Aug 21 15:13:05 2021

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