Magnesium in PDB 6zxc: Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Protein crystallography data
The structure of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State, PDB code: 6zxc
was solved by
R.D.Teixeira,
T.Schirmer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.80
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.812,
247.368,
41.539,
90,
90,
90
|
R / Rfree (%)
|
23.7 /
28.8
|
Other elements in 6zxc:
The structure of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
(pdb code 6zxc). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State, PDB code: 6zxc:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 1 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg300
b:128.5
occ:1.00
|
OD2
|
A:BFD56
|
1.7
|
46.9
|
1.0
|
F3
|
A:BFD56
|
2.0
|
57.0
|
1.0
|
OD1
|
A:ASP13
|
2.0
|
51.9
|
1.0
|
CG
|
A:BFD56
|
2.7
|
45.8
|
1.0
|
O
|
A:GLU58
|
2.7
|
53.1
|
1.0
|
CG
|
A:ASP13
|
3.0
|
53.5
|
1.0
|
OE2
|
A:GLU12
|
3.0
|
52.5
|
1.0
|
OD1
|
A:BFD56
|
3.2
|
47.0
|
1.0
|
OD2
|
A:ASP13
|
3.2
|
53.3
|
1.0
|
BE
|
A:BFD56
|
3.3
|
50.2
|
1.0
|
CD
|
A:GLU12
|
3.7
|
51.5
|
1.0
|
F1
|
A:BFD56
|
3.8
|
53.2
|
1.0
|
OE1
|
A:GLU12
|
3.8
|
53.3
|
1.0
|
NZ
|
A:LYS108
|
3.8
|
52.9
|
1.0
|
C
|
A:GLU58
|
4.0
|
52.0
|
1.0
|
CB
|
A:BFD56
|
4.1
|
44.0
|
1.0
|
CB
|
A:ASP13
|
4.3
|
53.5
|
1.0
|
N
|
A:ASP13
|
4.3
|
51.9
|
1.0
|
F2
|
A:BFD56
|
4.5
|
51.0
|
1.0
|
CA
|
A:GLU58
|
4.8
|
53.4
|
1.0
|
N
|
A:GLU58
|
4.8
|
49.9
|
1.0
|
CB
|
A:GLU58
|
4.8
|
57.2
|
1.0
|
CA
|
A:ASP13
|
4.9
|
53.0
|
1.0
|
N
|
A:SER14
|
5.0
|
52.2
|
1.0
|
N
|
A:LEU59
|
5.0
|
49.4
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 2 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg302
b:46.0
occ:1.00
|
O1A
|
A:GH3301
|
2.2
|
60.7
|
1.0
|
OD2
|
A:ASP174
|
2.3
|
50.6
|
1.0
|
OE2
|
A:GLU217
|
2.4
|
56.1
|
1.0
|
OE1
|
A:GLU218
|
2.5
|
77.3
|
1.0
|
CD
|
A:GLU218
|
3.0
|
78.5
|
1.0
|
CG
|
A:GLU218
|
3.2
|
71.3
|
1.0
|
CD
|
A:GLU217
|
3.3
|
53.5
|
1.0
|
CG
|
A:ASP174
|
3.4
|
46.2
|
1.0
|
CG
|
A:GLU217
|
3.5
|
51.0
|
1.0
|
PA
|
A:GH3301
|
3.6
|
59.9
|
1.0
|
OE2
|
A:GLU218
|
3.9
|
82.7
|
1.0
|
OD1
|
A:ASP174
|
4.0
|
47.1
|
1.0
|
MG
|
A:MG303
|
4.2
|
23.1
|
1.0
|
O3A
|
A:GH3301
|
4.2
|
55.5
|
1.0
|
OE1
|
A:GLU217
|
4.4
|
53.2
|
1.0
|
O5'
|
A:GH3301
|
4.5
|
61.5
|
1.0
|
CB
|
A:ASP174
|
4.6
|
44.5
|
1.0
|
O2A
|
A:GH3301
|
4.6
|
60.9
|
1.0
|
C5'
|
A:GH3301
|
4.6
|
59.2
|
1.0
|
CB
|
A:GLU218
|
4.8
|
64.2
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 6zxc
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Magnesium Binding Sites List in 6zxc
Magnesium binding site 3 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg303
b:23.1
occ:1.00
|
O3A
|
A:GH3301
|
2.1
|
55.5
|
1.0
|
O3G
|
A:GH3301
|
2.1
|
50.0
|
1.0
|
OE2
|
A:GLU217
|
2.2
|
56.1
|
1.0
|
OD1
|
A:ASP174
|
2.2
|
47.1
|
1.0
|
O
|
A:ILE175
|
2.4
|
43.0
|
1.0
|
O2B
|
A:GH3301
|
2.5
|
50.9
|
1.0
|
OE1
|
A:GLU217
|
2.5
|
53.2
|
1.0
|
CD
|
A:GLU217
|
2.7
|
53.5
|
1.0
|
PB
|
A:GH3301
|
2.8
|
53.0
|
1.0
|
PG
|
A:GH3301
|
3.2
|
53.2
|
1.0
|
CG
|
A:ASP174
|
3.2
|
46.2
|
1.0
|
O3B
|
A:GH3301
|
3.3
|
52.9
|
1.0
|
PA
|
A:GH3301
|
3.4
|
59.9
|
1.0
|
O1A
|
A:GH3301
|
3.5
|
60.7
|
1.0
|
OD2
|
A:ASP174
|
3.5
|
50.6
|
1.0
|
C
|
A:ILE175
|
3.6
|
43.5
|
1.0
|
O1G
|
A:GH3301
|
4.0
|
53.1
|
1.0
|
NZ
|
A:LYS289
|
4.1
|
52.5
|
1.0
|
N
|
A:ILE175
|
4.1
|
42.9
|
1.0
|
CG
|
A:GLU217
|
4.2
|
51.0
|
1.0
|
MG
|
A:MG302
|
4.2
|
46.0
|
1.0
|
O5'
|
A:GH3301
|
4.2
|
61.5
|
1.0
|
O1B
|
A:GH3301
|
4.2
|
52.9
|
1.0
|
C5'
|
A:GH3301
|
4.3
|
59.2
|
1.0
|
CE
|
A:LYS289
|
4.3
|
51.5
|
1.0
|
O2G
|
A:GH3301
|
4.4
|
53.0
|
1.0
|
CA
|
A:ILE175
|
4.4
|
43.3
|
1.0
|
C
|
A:ASP174
|
4.5
|
43.2
|
1.0
|
O2A
|
A:GH3301
|
4.5
|
60.9
|
1.0
|
CB
|
A:ASP174
|
4.6
|
44.5
|
1.0
|
CB
|
A:PHE178
|
4.6
|
52.6
|
1.0
|
N
|
A:ASP176
|
4.6
|
44.1
|
1.0
|
N
|
A:LYS177
|
4.7
|
53.5
|
1.0
|
N
|
A:PHE178
|
4.7
|
51.1
|
1.0
|
CA
|
A:ASP176
|
4.8
|
46.4
|
1.0
|
CB
|
A:ILE175
|
4.9
|
43.8
|
1.0
|
O
|
A:ASP174
|
5.0
|
42.6
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 4 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg300
b:48.1
occ:1.00
|
F3
|
B:BFD56
|
2.0
|
46.0
|
1.0
|
OD1
|
B:ASP13
|
2.2
|
46.7
|
1.0
|
OD2
|
B:BFD56
|
2.3
|
49.5
|
1.0
|
O
|
B:GLU58
|
2.3
|
46.5
|
1.0
|
OD2
|
B:ASP13
|
2.7
|
46.9
|
1.0
|
CG
|
B:ASP13
|
2.8
|
46.1
|
1.0
|
CG
|
B:BFD56
|
3.4
|
44.4
|
1.0
|
OE2
|
B:GLU12
|
3.6
|
47.8
|
1.0
|
C
|
B:GLU58
|
3.6
|
48.0
|
1.0
|
BE
|
B:BFD56
|
3.6
|
46.6
|
1.0
|
OD1
|
B:BFD56
|
3.8
|
44.2
|
1.0
|
F1
|
B:BFD56
|
4.2
|
53.7
|
1.0
|
CB
|
B:GLU58
|
4.3
|
50.7
|
1.0
|
CB
|
B:ASP13
|
4.3
|
46.2
|
1.0
|
CA
|
B:GLU58
|
4.4
|
48.1
|
1.0
|
CD
|
B:GLU12
|
4.4
|
45.8
|
1.0
|
NZ
|
B:LYS108
|
4.5
|
44.5
|
1.0
|
N
|
B:LEU59
|
4.6
|
48.2
|
1.0
|
OE1
|
B:GLU12
|
4.6
|
45.3
|
1.0
|
F2
|
B:BFD56
|
4.6
|
47.6
|
1.0
|
N
|
B:GLU58
|
4.7
|
44.1
|
1.0
|
N
|
B:ASP13
|
4.7
|
44.1
|
1.0
|
CB
|
B:BFD56
|
4.8
|
41.1
|
1.0
|
CA
|
B:LEU59
|
4.9
|
48.5
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 5 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg302
b:76.7
occ:1.00
|
O1A
|
B:GH3301
|
2.0
|
63.6
|
1.0
|
OE2
|
B:GLU218
|
2.1
|
80.5
|
1.0
|
OE2
|
B:GLU217
|
2.5
|
70.6
|
1.0
|
OD2
|
B:ASP174
|
2.5
|
48.6
|
1.0
|
CD
|
B:GLU218
|
3.1
|
79.8
|
1.0
|
CD
|
B:GLU217
|
3.3
|
68.1
|
1.0
|
PA
|
B:GH3301
|
3.4
|
49.8
|
1.0
|
CG
|
B:GLU217
|
3.4
|
62.7
|
1.0
|
CG
|
B:GLU218
|
3.6
|
75.6
|
1.0
|
CG
|
B:ASP174
|
3.6
|
48.7
|
1.0
|
O5'
|
B:GH3301
|
3.9
|
55.2
|
1.0
|
O3A
|
B:GH3301
|
4.1
|
40.9
|
1.0
|
C5'
|
B:GH3301
|
4.1
|
53.6
|
1.0
|
OD1
|
B:ASP174
|
4.1
|
49.4
|
1.0
|
OE1
|
B:GLU218
|
4.2
|
78.9
|
1.0
|
MG
|
B:MG303
|
4.3
|
29.4
|
1.0
|
OE1
|
B:GLU217
|
4.4
|
70.8
|
1.0
|
O2A
|
B:GH3301
|
4.6
|
51.3
|
1.0
|
CB
|
B:ASP174
|
4.8
|
47.2
|
1.0
|
CB
|
B:GLU217
|
4.9
|
60.7
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 6 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg303
b:29.4
occ:1.00
|
O3G
|
B:GH3301
|
1.8
|
55.7
|
1.0
|
OE2
|
B:GLU217
|
2.0
|
70.6
|
1.0
|
OE1
|
B:GLU217
|
2.1
|
70.8
|
1.0
|
O
|
B:ILE175
|
2.2
|
40.6
|
1.0
|
OD1
|
B:ASP174
|
2.2
|
49.4
|
1.0
|
O3A
|
B:GH3301
|
2.4
|
40.9
|
1.0
|
CD
|
B:GLU217
|
2.4
|
68.1
|
1.0
|
O2B
|
B:GH3301
|
3.1
|
45.0
|
1.0
|
CG
|
B:ASP174
|
3.2
|
48.7
|
1.0
|
PG
|
B:GH3301
|
3.2
|
44.5
|
1.0
|
PB
|
B:GH3301
|
3.3
|
42.5
|
1.0
|
C
|
B:ILE175
|
3.4
|
43.4
|
1.0
|
PA
|
B:GH3301
|
3.6
|
49.8
|
1.0
|
OD2
|
B:ASP174
|
3.6
|
48.6
|
1.0
|
O1A
|
B:GH3301
|
3.7
|
63.6
|
1.0
|
O3B
|
B:GH3301
|
3.7
|
42.6
|
1.0
|
N
|
B:ILE175
|
3.8
|
45.0
|
1.0
|
CG
|
B:GLU217
|
3.9
|
62.7
|
1.0
|
NZ
|
B:LYS289
|
4.1
|
49.7
|
1.0
|
O1G
|
B:GH3301
|
4.1
|
43.4
|
1.0
|
CA
|
B:ILE175
|
4.1
|
44.5
|
1.0
|
C5'
|
B:GH3301
|
4.2
|
53.6
|
1.0
|
O2G
|
B:GH3301
|
4.2
|
47.2
|
1.0
|
MG
|
B:MG302
|
4.3
|
76.7
|
1.0
|
C
|
B:ASP174
|
4.3
|
45.0
|
1.0
|
CB
|
B:PHE178
|
4.4
|
45.3
|
1.0
|
O5'
|
B:GH3301
|
4.4
|
55.2
|
1.0
|
N
|
B:ASP176
|
4.5
|
42.5
|
1.0
|
CB
|
B:ASP174
|
4.5
|
47.2
|
1.0
|
N
|
B:PHE178
|
4.6
|
45.9
|
1.0
|
CE
|
B:LYS289
|
4.6
|
51.8
|
1.0
|
CB
|
B:ILE175
|
4.6
|
43.9
|
1.0
|
N
|
B:LYS177
|
4.6
|
47.9
|
1.0
|
O1B
|
B:GH3301
|
4.7
|
38.0
|
1.0
|
CA
|
B:ASP176
|
4.7
|
44.6
|
1.0
|
CB
|
B:GLU217
|
4.8
|
60.7
|
1.0
|
O
|
B:ASP174
|
4.8
|
45.6
|
1.0
|
CA
|
B:ASP174
|
4.8
|
45.9
|
1.0
|
O2A
|
B:GH3301
|
4.9
|
51.3
|
1.0
|
C
|
B:ASP176
|
4.9
|
46.4
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 7 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg300
b:50.4
occ:1.00
|
F3
|
C:BFD56
|
1.8
|
68.6
|
1.0
|
OD2
|
C:BFD56
|
1.9
|
69.0
|
1.0
|
OD1
|
C:ASP13
|
2.1
|
67.1
|
1.0
|
O
|
C:GLU58
|
2.3
|
68.8
|
1.0
|
CG
|
C:ASP13
|
2.9
|
67.9
|
1.0
|
CG
|
C:BFD56
|
2.9
|
65.5
|
1.0
|
OD2
|
C:ASP13
|
3.0
|
72.0
|
1.0
|
BE
|
C:BFD56
|
3.3
|
70.4
|
1.0
|
OD1
|
C:BFD56
|
3.4
|
64.7
|
1.0
|
C
|
C:GLU58
|
3.6
|
69.7
|
1.0
|
OE2
|
C:GLU12
|
3.6
|
63.6
|
1.0
|
F1
|
C:BFD56
|
3.8
|
73.7
|
1.0
|
NZ
|
C:LYS108
|
4.1
|
61.1
|
1.0
|
CD
|
C:GLU12
|
4.3
|
62.6
|
1.0
|
CB
|
C:BFD56
|
4.3
|
64.3
|
1.0
|
OE1
|
C:GLU12
|
4.3
|
64.4
|
1.0
|
CA
|
C:GLU58
|
4.3
|
71.3
|
1.0
|
CB
|
C:ASP13
|
4.4
|
66.2
|
1.0
|
F2
|
C:BFD56
|
4.4
|
80.7
|
1.0
|
CB
|
C:GLU58
|
4.4
|
72.1
|
1.0
|
N
|
C:GLU58
|
4.5
|
71.3
|
1.0
|
N
|
C:LEU59
|
4.6
|
69.2
|
1.0
|
N
|
C:ASP13
|
4.7
|
61.8
|
1.0
|
CA
|
C:LEU59
|
4.9
|
69.9
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 8 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg302
b:47.0
occ:1.00
|
OE2
|
C:GLU217
|
2.5
|
58.7
|
1.0
|
OD2
|
C:ASP174
|
2.7
|
51.9
|
1.0
|
OE2
|
C:GLU218
|
2.8
|
77.8
|
1.0
|
O1A
|
C:GH3301
|
2.9
|
47.0
|
1.0
|
CD
|
C:GLU218
|
3.4
|
76.4
|
1.0
|
CD
|
C:GLU217
|
3.4
|
54.9
|
1.0
|
CG
|
C:GLU218
|
3.6
|
72.1
|
1.0
|
PA
|
C:GH3301
|
3.6
|
49.7
|
1.0
|
CG
|
C:GLU217
|
3.6
|
55.2
|
1.0
|
O2A
|
C:GH3301
|
3.8
|
56.9
|
1.0
|
O5'
|
C:GH3301
|
3.8
|
55.1
|
1.0
|
CG
|
C:ASP174
|
3.8
|
51.0
|
1.0
|
NH2
|
B:ARG23
|
4.0
|
54.9
|
1.0
|
C5'
|
C:GH3301
|
4.1
|
56.6
|
1.0
|
OD1
|
C:ASP174
|
4.3
|
55.7
|
1.0
|
OE1
|
C:GLU218
|
4.5
|
79.7
|
1.0
|
MG
|
C:MG303
|
4.5
|
28.4
|
1.0
|
OE1
|
C:GLU217
|
4.6
|
51.2
|
1.0
|
NH1
|
B:ARG23
|
4.9
|
53.5
|
1.0
|
CZ
|
B:ARG23
|
4.9
|
52.4
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 9 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg303
b:28.4
occ:1.00
|
O2B
|
C:GH3301
|
1.9
|
42.6
|
1.0
|
O
|
C:ILE175
|
2.1
|
49.0
|
1.0
|
OE1
|
C:GLU217
|
2.1
|
51.2
|
1.0
|
O3G
|
C:GH3301
|
2.1
|
36.1
|
1.0
|
OE2
|
C:GLU217
|
2.2
|
58.7
|
1.0
|
OD1
|
C:ASP174
|
2.3
|
55.7
|
1.0
|
O1A
|
C:GH3301
|
2.4
|
47.0
|
1.0
|
CD
|
C:GLU217
|
2.5
|
54.9
|
1.0
|
PB
|
C:GH3301
|
3.2
|
40.1
|
1.0
|
C
|
C:ILE175
|
3.3
|
47.5
|
1.0
|
PG
|
C:GH3301
|
3.3
|
45.1
|
1.0
|
CG
|
C:ASP174
|
3.4
|
51.0
|
1.0
|
O3B
|
C:GH3301
|
3.6
|
41.7
|
1.0
|
PA
|
C:GH3301
|
3.7
|
49.7
|
1.0
|
OD2
|
C:ASP174
|
3.8
|
51.9
|
1.0
|
O3A
|
C:GH3301
|
3.8
|
45.1
|
1.0
|
N
|
C:ILE175
|
3.9
|
47.7
|
1.0
|
NH2
|
B:ARG23
|
3.9
|
54.9
|
1.0
|
CG
|
C:GLU217
|
4.0
|
55.2
|
1.0
|
O1G
|
C:GH3301
|
4.1
|
40.6
|
1.0
|
NZ
|
C:LYS289
|
4.1
|
60.3
|
1.0
|
CA
|
C:ILE175
|
4.1
|
48.0
|
1.0
|
CB
|
C:PHE178
|
4.2
|
42.7
|
1.0
|
C5'
|
C:GH3301
|
4.3
|
56.6
|
1.0
|
N
|
C:ASP176
|
4.3
|
45.8
|
1.0
|
C
|
C:ASP174
|
4.3
|
46.8
|
1.0
|
N
|
C:PHE178
|
4.4
|
45.7
|
1.0
|
CE
|
C:LYS289
|
4.4
|
64.3
|
1.0
|
O1B
|
C:GH3301
|
4.5
|
39.9
|
1.0
|
MG
|
C:MG302
|
4.5
|
47.0
|
1.0
|
O5'
|
C:GH3301
|
4.5
|
55.1
|
1.0
|
N
|
C:LYS177
|
4.5
|
46.4
|
1.0
|
CB
|
C:ILE175
|
4.6
|
49.0
|
1.0
|
O2G
|
C:GH3301
|
4.6
|
47.5
|
1.0
|
CA
|
C:ASP176
|
4.6
|
46.8
|
1.0
|
CB
|
C:ASP174
|
4.6
|
48.5
|
1.0
|
C
|
C:ASP176
|
4.7
|
45.2
|
1.0
|
O
|
C:ASP174
|
4.9
|
45.8
|
1.0
|
CB
|
C:GLU217
|
4.9
|
54.4
|
1.0
|
O2A
|
C:GH3301
|
4.9
|
56.9
|
1.0
|
CA
|
C:ASP174
|
4.9
|
47.3
|
1.0
|
CA
|
C:PHE178
|
4.9
|
43.5
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 6zxc
Go back to
Magnesium Binding Sites List in 6zxc
Magnesium binding site 10 out
of 12 in the Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Diguanylate Cyclase Dgcr (I-Site Mutant) in Activated State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg300
b:72.0
occ:1.00
|
F3
|
D:BFD56
|
2.0
|
78.1
|
1.0
|
OD1
|
D:ASP13
|
2.4
|
78.4
|
1.0
|
OD2
|
D:BFD56
|
2.7
|
83.7
|
1.0
|
OD2
|
D:ASP13
|
2.7
|
85.3
|
1.0
|
O
|
D:GLU58
|
2.8
|
89.2
|
1.0
|
CG
|
D:ASP13
|
2.9
|
84.8
|
1.0
|
BE
|
D:BFD56
|
3.6
|
74.0
|
1.0
|
CG
|
D:BFD56
|
3.7
|
77.4
|
1.0
|
OE2
|
D:GLU12
|
3.7
|
89.2
|
1.0
|
F1
|
D:BFD56
|
3.9
|
74.3
|
1.0
|
OD1
|
D:BFD56
|
4.0
|
73.3
|
1.0
|
C
|
D:GLU58
|
4.0
|
89.5
|
1.0
|
CB
|
D:GLU58
|
4.4
|
91.3
|
1.0
|
CB
|
D:ASP13
|
4.4
|
87.5
|
1.0
|
CD
|
D:GLU12
|
4.6
|
83.3
|
1.0
|
CA
|
D:GLU58
|
4.7
|
88.8
|
1.0
|
F2
|
D:BFD56
|
4.7
|
73.4
|
1.0
|
OE1
|
D:GLU12
|
4.7
|
82.1
|
1.0
|
N
|
D:GLU58
|
5.0
|
85.3
|
1.0
|
|
Reference:
R.D.Teixeira,
T.Schirmer.
Dgcr Structure in Activated State To Be Published.
Page generated: Wed Oct 2 03:14:12 2024
|