Magnesium in PDB 6zxs: Cold Grown Pea Photosystem I

All present enzymatic activity of Cold Grown Pea Photosystem I:
1.97.1.12;

The structure of Cold Grown Pea Photosystem I, PDB code: 6zxs was solved by I.Caspy, A.Borovikova-Sheinker, R.Subramanyam, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.63 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	190.197, 201.786, 213.614, 90, 90, 90
R / Rfree (%)	23.9 / 27

The structure of Cold Grown Pea Photosystem I also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Iron	(Fe)	12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 156;

Binding sites:

The binding sites of Magnesium atom in the Cold Grown Pea Photosystem I (pdb code 6zxs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 156 binding sites of Magnesium where determined in the Cold Grown Pea Photosystem I, PDB code: 6zxs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:79.6 occ:1.00 MG A:CL0801 0.0 79.6 1.0 ND A:CL0801 2.0 86.4 1.0 NB A:CL0801 2.1 86.8 1.0 NC A:CL0801 2.1 82.5 1.0 NA A:CL0801 2.3 104.6 1.0 C4D A:CL0801 3.0 85.5 1.0 C4B A:CL0801 3.0 76.9 1.0 NE2 A:HIS683 3.0 66.4 1.0 C1B A:CL0801 3.1 84.3 1.0 C1C A:CL0801 3.1 79.4 1.0 C1D A:CL0801 3.2 90.6 1.0 C4A A:CL0801 3.2 86.9 1.0 C4C A:CL0801 3.2 84.4 1.0 C1A A:CL0801 3.2 88.3 1.0 CHC A:CL0801 3.4 84.2 1.0 CHB A:CL0801 3.4 73.4 1.0 CHA A:CL0801 3.5 88.1 1.0 CHD A:CL0801 3.6 89.5 1.0 C4B B:CLA803 3.9 98.3 1.0 CHC B:CLA803 3.9 98.1 1.0 C3B B:CLA803 3.9 81.8 1.0 CD2 A:HIS683 3.9 90.7 1.0 CAB B:CLA803 4.0 68.4 1.0 CE1 A:HIS683 4.0 66.5 1.0 C3D A:CL0801 4.2 90.3 1.0 C3B A:CL0801 4.3 66.9 1.0 C2B A:CL0801 4.4 85.5 1.0 C2D A:CL0801 4.4 86.5 1.0 C2C A:CL0801 4.4 85.0 1.0 C3C A:CL0801 4.5 98.5 1.0 NB B:CLA803 4.5 93.7 1.0 C3A A:CL0801 4.5 93.0 1.0 C2B B:CLA803 4.6 71.4 1.0 C2A A:CL0801 4.6 66.2 1.0 C1C B:CLA803 4.6 90.1 1.0 CBB B:CLA803 4.8 77.0 1.0 C1B B:CLA803 4.9 82.7 1.0

Magnesium binding site 2 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:89.8 occ:1.00 MG A:CLA802 0.0 89.8 1.0 ND A:CLA802 2.0 75.5 1.0 NB A:CLA802 2.0 96.7 1.0 NC A:CLA802 2.1 71.4 1.0 NA A:CLA802 2.2 85.0 1.0 C4D A:CLA802 2.9 74.3 1.0 C4B A:CLA802 3.0 98.5 1.0 C1C A:CLA802 3.0 75.5 1.0 C1B A:CLA802 3.1 78.4 1.0 C1D A:CLA802 3.1 70.2 1.0 C4A A:CLA802 3.2 67.5 1.0 C4C A:CLA802 3.2 67.8 1.0 C1A A:CLA802 3.2 81.4 1.0 SD A:MET691 3.2 78.3 1.0 CHC A:CLA802 3.3 83.2 1.0 NE1 B:TRP582 3.4 88.1 1.0 CHB A:CLA802 3.4 79.8 1.0 CHA A:CLA802 3.5 79.2 1.0 CHD A:CLA802 3.5 72.8 1.0 CG A:MET691 3.8 85.1 1.0 CB A:MET691 4.1 81.9 1.0 C3D A:CLA802 4.2 67.2 1.0 CE2 B:TRP582 4.2 79.5 1.0 C3B A:CLA802 4.3 85.8 1.0 CZ2 B:TRP582 4.3 75.2 1.0 C2B A:CLA802 4.3 67.5 1.0 C2D A:CLA802 4.3 72.8 1.0 CE A:MET691 4.3 71.3 1.0 C2C A:CLA802 4.4 70.3 1.0 C3C A:CLA802 4.4 66.5 1.0 C3A A:CLA802 4.5 77.4 1.0 CD1 B:TRP582 4.5 80.3 1.0 C2A A:CLA802 4.5 68.2 1.0 CBD A:CLA802 4.9 62.3 1.0

Magnesium binding site 3 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:92.1 occ:1.00 MG A:CLA803 0.0 92.1 1.0 ND A:CLA803 2.0 80.7 1.0 NB A:CLA803 2.0 99.2 1.0 NC A:CLA803 2.1 91.2 1.0 NA A:CLA803 2.2 87.9 1.0 C4D A:CLA803 2.9 76.9 1.0 C4B A:CLA803 3.0 92.2 1.0 NE2 A:HIS62 3.0 81.5 1.0 C1C A:CLA803 3.1 82.9 1.0 C1B A:CLA803 3.1 98.0 1.0 C1D A:CLA803 3.1 78.6 1.0 C4A A:CLA803 3.2 97.4 1.0 C4C A:CLA803 3.2 79.7 1.0 C1A A:CLA803 3.2 83.2 1.0 CHC A:CLA803 3.3 88.7 1.0 CHB A:CLA803 3.4 87.9 1.0 CHA A:CLA803 3.5 83.3 1.0 CHD A:CLA803 3.5 87.5 1.0 CD2 A:HIS62 3.9 86.2 1.0 C7 A:CLA810 4.0 95.3 1.0 CE1 A:HIS62 4.0 108.2 1.0 C3D A:CLA803 4.2 83.7 1.0 C3B A:CLA803 4.2 81.5 1.0 C2B A:CLA803 4.3 94.0 1.0 C2D A:CLA803 4.3 68.0 1.0 C2C A:CLA803 4.4 79.7 1.0 C3C A:CLA803 4.4 85.3 1.0 C3A A:CLA803 4.5 93.2 1.0 C2A A:CLA803 4.5 87.4 1.0 C10 A:CLA810 4.6 78.3 1.0 CAB J:CLA1101 4.7 76.5 1.0 C8 A:CLA810 4.9 82.5 1.0 CBD A:CLA803 4.9 81.1 1.0

Magnesium binding site 4 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:101.1 occ:1.00 MG A:CLA804 0.0 101.1 1.0 ND A:CLA804 2.0 81.8 1.0 NB A:CLA804 2.0 87.0 1.0 NC A:CLA804 2.1 86.3 1.0 NA A:CLA804 2.2 102.0 1.0 C4D A:CLA804 2.9 91.8 1.0 CE1 A:HIS82 3.0 89.8 1.0 C4B A:CLA804 3.0 85.4 1.0 C1C A:CLA804 3.0 99.7 1.0 C1B A:CLA804 3.1 86.8 1.0 C1D A:CLA804 3.1 87.5 1.0 CMB A:CLA828 3.2 74.3 1.0 C4A A:CLA804 3.2 89.7 1.0 C1A A:CLA804 3.2 95.6 1.0 C4C A:CLA804 3.2 85.8 1.0 CHC A:CLA804 3.3 88.1 1.0 CHB A:CLA804 3.5 80.4 1.0 CHA A:CLA804 3.5 89.4 1.0 CHD A:CLA804 3.5 90.4 1.0 NE2 A:HIS82 3.7 107.1 1.0 ND1 A:HIS82 3.8 93.0 1.0 C3D A:CLA804 4.2 90.2 1.0 C3B A:CLA804 4.2 90.8 1.0 C2B A:CLA804 4.3 88.1 1.0 C2D A:CLA804 4.3 89.8 1.0 C2C A:CLA804 4.4 88.3 1.0 C3C A:CLA804 4.4 78.7 1.0 CBB A:CLA828 4.4 83.2 1.0 C3A A:CLA804 4.5 93.2 1.0 C2A A:CLA804 4.5 98.2 1.0 C2B A:CLA828 4.6 68.7 1.0 CD2 A:HIS82 4.7 115.9 1.0 CG A:HIS82 4.8 110.7 1.0 CG1 A:VAL78 4.8 89.7 1.0 CBD A:CLA804 4.9 80.9 1.0

Magnesium binding site 5 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:86.6 occ:1.00 MG A:CLA805 0.0 86.6 1.0 ND A:CLA805 2.0 88.7 1.0 NB A:CLA805 2.0 86.7 1.0 NC A:CLA805 2.1 115.5 1.0 NA A:CLA805 2.2 76.8 1.0 C4D A:CLA805 2.9 86.7 1.0 NE2 A:GLN85 2.9 92.6 1.0 C4B A:CLA805 3.0 101.0 1.0 C1C A:CLA805 3.0 104.7 1.0 C1B A:CLA805 3.1 84.5 1.0 C1D A:CLA805 3.1 91.0 1.0 C4A A:CLA805 3.2 69.0 1.0 C1A A:CLA805 3.2 79.8 1.0 C4C A:CLA805 3.2 102.0 1.0 CHC A:CLA805 3.3 108.0 1.0 CHB A:CLA805 3.5 69.7 1.0 CHA A:CLA805 3.5 82.6 1.0 C17 A:CLA805 3.5 76.0 1.0 CHD A:CLA805 3.5 91.5 1.0 OE1 A:GLN85 3.6 88.8 1.0 CD A:GLN85 3.6 90.3 1.0 C15 A:CLA805 3.7 93.2 1.0 C18 A:CLA805 4.0 78.1 1.0 C3D A:CLA805 4.2 87.1 1.0 C16 A:CLA805 4.2 79.7 1.0 C3B A:CLA805 4.2 86.5 1.0 C2B A:CLA805 4.3 77.5 1.0 C2D A:CLA805 4.3 80.2 1.0 C2C A:CLA805 4.4 86.1 1.0 C3C A:CLA805 4.4 96.0 1.0 C3A A:CLA805 4.5 68.4 1.0 C2A A:CLA805 4.5 67.9 1.0 CG A:GLN85 4.9 97.2 1.0 CBD A:CLA805 4.9 76.8 1.0 C20 A:CLA805 4.9 94.4 1.0

Magnesium binding site 6 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:132.3 occ:1.00 MG A:CLA806 0.0 132.3 1.0 ND A:CLA806 2.0 113.7 1.0 NB A:CLA806 2.0 130.8 1.0 NC A:CLA806 2.1 109.6 1.0 NA A:CLA806 2.2 105.5 1.0 C4D A:CLA806 2.9 113.9 1.0 C4B A:CLA806 3.0 113.0 1.0 CE1 A:HIS99 3.0 88.7 1.0 C1C A:CLA806 3.0 109.6 1.0 C1B A:CLA806 3.1 118.5 1.0 C1D A:CLA806 3.1 118.5 1.0 C4A A:CLA806 3.2 121.8 1.0 C1A A:CLA806 3.2 93.9 1.0 C4C A:CLA806 3.2 105.7 1.0 CHC A:CLA806 3.3 113.4 1.0 CHA A:CLA806 3.5 107.7 1.0 CHB A:CLA806 3.5 129.5 1.0 CHD A:CLA806 3.5 124.3 1.0 C8 A:LMT850 3.8 109.8 1.0 NE2 A:HIS99 3.9 104.2 1.0 ND1 A:HIS99 4.0 103.2 1.0 C3D A:CLA806 4.2 113.1 1.0 C10 A:LMT850 4.2 106.8 1.0 C3B A:CLA806 4.2 106.5 1.0 C2B A:CLA806 4.3 101.8 1.0 C2D A:CLA806 4.3 101.4 1.0 C2C A:CLA806 4.4 118.3 1.0 C3C A:CLA806 4.4 84.7 1.0 C9 A:LMT850 4.4 115.0 1.0 C3A A:CLA806 4.5 99.9 1.0 C2A A:CLA806 4.5 94.8 1.0 C7 A:LMT850 4.7 115.2 1.0 C6 A:LMT850 4.7 125.3 1.0 CBD A:CLA806 4.9 102.9 1.0

Magnesium binding site 7 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:82.5 occ:1.00 MG A:CLA807 0.0 82.5 1.0 ND A:CLA807 2.0 84.5 1.0 NB A:CLA807 2.0 86.8 1.0 NC A:CLA807 2.1 70.2 1.0 NA A:CLA807 2.2 94.0 1.0 OE1 A:GLN121 2.9 93.5 1.0 C4D A:CLA807 2.9 80.2 1.0 C4B A:CLA807 3.0 77.0 1.0 C1C A:CLA807 3.0 75.5 1.0 C1B A:CLA807 3.1 81.9 1.0 C1D A:CLA807 3.1 79.3 1.0 C4A A:CLA807 3.2 90.0 1.0 C1A A:CLA807 3.2 84.5 1.0 C4C A:CLA807 3.2 82.8 1.0 CHC A:CLA807 3.3 69.4 1.0 CHB A:CLA807 3.5 70.9 1.0 CHA A:CLA807 3.5 72.6 1.0 CHD A:CLA807 3.5 71.1 1.0 CD A:GLN121 3.7 97.4 1.0 C2 A:CLA826 3.8 70.0 1.0 NE2 A:GLN121 3.9 86.5 1.0 C3D A:CLA807 4.2 85.4 1.0 C3B A:CLA807 4.3 74.0 1.0 C2B A:CLA807 4.3 79.8 1.0 C2D A:CLA807 4.3 81.4 1.0 C2C A:CLA807 4.4 81.6 1.0 C6 A:CLA826 4.4 73.7 1.0 C3C A:CLA807 4.4 82.2 1.0 C3A A:CLA807 4.5 115.9 1.0 C2A A:CLA807 4.5 103.0 1.0 C1 A:CLA826 4.7 91.5 1.0 C3 A:CLA826 4.7 78.6 1.0 C5 A:CLA826 4.7 84.5 1.0 O1A A:CLA807 4.8 119.1 1.0 C9 A:CLA826 4.9 78.4 1.0 CBD A:CLA807 4.9 75.5 1.0

Magnesium binding site 8 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:78.8 occ:1.00 MG A:CLA808 0.0 78.8 1.0 ND A:CLA808 2.0 86.9 1.0 NB A:CLA808 2.0 68.5 1.0 NC A:CLA808 2.1 75.6 1.0 NA A:CLA808 2.2 90.6 1.0 OE1 A:GLN129 2.9 115.5 1.0 C4D A:CLA808 2.9 75.0 1.0 C4B A:CLA808 3.0 68.1 1.0 C1C A:CLA808 3.0 68.0 1.0 C1B A:CLA808 3.1 68.7 1.0 C1D A:CLA808 3.1 85.4 1.0 C4A A:CLA808 3.2 85.1 1.0 C1A A:CLA808 3.2 75.2 1.0 C4C A:CLA808 3.2 75.2 1.0 CHC A:CLA808 3.3 67.9 1.0 CHB A:CLA808 3.4 75.2 1.0 CHA A:CLA808 3.5 70.3 1.0 CD A:GLN129 3.5 115.2 1.0 CHD A:CLA808 3.5 69.0 1.0 NE2 A:GLN129 3.6 119.2 1.0 C3D A:CLA808 4.2 77.0 1.0 C3B A:CLA808 4.2 68.0 1.0 C16 A:CLA826 4.3 67.3 1.0 C2B A:CLA808 4.3 68.4 1.0 C2D A:CLA808 4.3 76.2 1.0 C2C A:CLA808 4.4 79.6 1.0 C3C A:CLA808 4.4 79.0 1.0 C17 A:CLA826 4.5 67.1 1.0 C3A A:CLA808 4.5 87.3 1.0 C2A A:CLA808 4.5 95.4 1.0 CG A:GLN129 4.8 102.7 1.0 CB A:GLN129 4.9 99.6 1.0 CBD A:CLA808 4.9 76.6 1.0

Magnesium binding site 9 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:132.8 occ:1.00 MG A:CLA809 0.0 132.8 1.0 ND A:CLA809 2.0 128.2 1.0 NB A:CLA809 2.0 128.8 1.0 NC A:CLA809 2.1 129.9 1.0 NA A:CLA809 2.2 127.9 1.0 C4D A:CLA809 2.9 135.2 1.0 C4B A:CLA809 3.0 124.3 1.0 C1C A:CLA809 3.0 113.0 1.0 CE1 A:HIS185 3.1 109.7 1.0 C1B A:CLA809 3.1 119.9 1.0 C1D A:CLA809 3.1 130.7 1.0 C4A A:CLA809 3.2 117.4 1.0 C1A A:CLA809 3.2 129.7 1.0 C4C A:CLA809 3.2 119.9 1.0 NE2 A:HIS185 3.2 93.8 1.0 CHC A:CLA809 3.3 119.9 1.0 CHA A:CLA809 3.4 141.3 1.0 CHB A:CLA809 3.5 122.3 1.0 CHD A:CLA809 3.5 132.0 1.0 C17 A:CLA812 3.7 114.4 1.0 C19 A:CLA812 3.7 113.4 1.0 C18 A:CLA812 4.1 105.0 1.0 C3D A:CLA809 4.2 130.8 1.0 C3B A:CLA809 4.2 114.0 1.0 C16 A:CLA812 4.3 116.1 1.0 C2B A:CLA809 4.3 123.5 1.0 ND1 A:HIS185 4.3 108.4 1.0 C2D A:CLA809 4.3 118.1 1.0 C2C A:CLA809 4.4 104.7 1.0 C3C A:CLA809 4.4 104.4 1.0 C3A A:CLA809 4.5 115.0 1.0 C2A A:CLA809 4.5 127.1 1.0 CD2 A:HIS185 4.5 100.5 1.0 C20 A:CLA812 4.6 120.6 1.0 CBA A:CLA809 4.8 119.8 1.0 CBD A:CLA809 4.9 131.3 1.0

Magnesium binding site 10 out of 156 in the Cold Grown Pea Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cold Grown Pea Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:94.5 occ:1.00 MG A:CLA810 0.0 94.5 1.0 ND A:CLA810 2.0 106.0 1.0 NB A:CLA810 2.0 108.0 1.0 NC A:CLA810 2.1 117.1 1.0 NA A:CLA810 2.2 89.0 1.0 C4D A:CLA810 2.9 93.6 1.0 NE2 A:HIS187 3.0 98.7 1.0 C4B A:CLA810 3.0 104.6 1.0 C1C A:CLA810 3.1 106.6 1.0 C1B A:CLA810 3.1 106.1 1.0 C1D A:CLA810 3.1 100.6 1.0 O1A A:CLA803 3.1 81.9 1.0 C4A A:CLA810 3.2 91.3 1.0 C4C A:CLA810 3.2 115.1 1.0 C1A A:CLA810 3.2 90.1 1.0 CHC A:CLA810 3.3 103.7 1.0 CHB A:CLA810 3.5 92.8 1.0 CHA A:CLA810 3.5 89.7 1.0 CHD A:CLA810 3.5 113.0 1.0 CGA A:CLA803 3.7 92.1 1.0 CD2 A:HIS187 3.8 102.8 1.0 CBA A:CLA803 3.9 84.4 1.0 CE1 A:HIS187 4.0 121.5 1.0 O1A A:CLA810 4.1 105.8 1.0 C3D A:CLA810 4.2 92.8 1.0 C3B A:CLA810 4.3 97.8 1.0 C2B A:CLA810 4.3 103.5 1.0 C2D A:CLA810 4.3 77.5 1.0 C2C A:CLA810 4.4 102.3 1.0 C3C A:CLA810 4.4 106.3 1.0 C2A A:CLA810 4.5 106.1 1.0 C3A A:CLA810 4.5 93.4 1.0 O2A A:CLA803 4.8 124.7 1.0 CBD A:CLA810 4.9 92.4 1.0 CAA A:CLA803 4.9 89.4 1.0 CG A:HIS187 5.0 103.7 1.0

N.Nelson, I.Caspy, R.Subramanyam. Structure of Cold Grown Pea Photosystem I To Be Published.