Magnesium in PDB 6zz6: Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex (pdb code 6zz6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex, PDB code: 6zz6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:34.6 occ:1.00 O2G A:ATP2000 2.0 46.0 1.0 OG A:SER40 2.0 35.6 1.0 O2B A:ATP2000 2.1 46.0 1.0 OE1 A:GLN151 2.1 31.0 1.0 PB A:ATP2000 2.7 46.0 1.0 O1B A:ATP2000 2.8 46.0 1.0 CD A:GLN151 3.2 31.0 1.0 PG A:ATP2000 3.3 46.0 1.0 O3B A:ATP2000 3.4 46.0 1.0 CB A:SER40 3.4 35.6 1.0 OD1 A:ASP1157 3.7 31.1 1.0 NE2 A:GLN151 3.9 31.0 1.0 O3G A:ATP2000 4.1 46.0 1.0 O3A A:ATP2000 4.2 46.0 1.0 N A:SER40 4.2 35.6 1.0 CA A:SER40 4.2 35.6 1.0 CG A:GLN151 4.3 31.0 1.0 CB A:GLN151 4.3 31.0 1.0 OD2 A:ASP1157 4.4 31.1 1.0 O1G A:ATP2000 4.4 46.0 1.0 CG A:ASP1157 4.4 31.1 1.0 O1A A:ATP2000 4.7 46.0 1.0 PA A:ATP2000 4.8 46.0 1.0 N B:GLY1128 4.9 23.8 1.0 O2A A:ATP2000 5.0 46.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2001 b:19.6 occ:1.00 OE1 B:GLN148 2.2 14.9 1.0 CB B:SER39 2.5 15.2 1.0 OG B:SER39 2.6 15.2 1.0 O1G B:ATP2000 3.2 20.1 1.0 O3B B:ATP2000 3.2 20.1 1.0 O2A B:ATP2000 3.3 20.1 1.0 CD B:GLN148 3.4 14.9 1.0 PG B:ATP2000 3.6 20.1 1.0 O2G B:ATP2000 3.6 20.1 1.0 O3A B:ATP2000 3.9 20.1 1.0 OD2 B:ASP1154 3.9 16.4 1.0 CA B:SER39 4.0 15.2 1.0 PB B:ATP2000 4.1 20.1 1.0 NE2 B:GLN148 4.2 14.9 1.0 PA B:ATP2000 4.3 20.1 1.0 CB B:GLN148 4.3 14.9 1.0 O1B B:ATP2000 4.5 20.1 1.0 CG B:GLN148 4.5 14.9 1.0 N B:SER39 4.5 15.2 1.0 N A:GLY1131 4.6 17.4 1.0 OG A:SER1130 4.7 19.9 1.0 CG B:ASP1154 4.7 16.4 1.0 OD1 B:ASP1154 4.9 16.4 1.0 C B:SER39 5.0 15.2 1.0

J.E.Collier, B.G.Lee, M.B.Roig, S.Yatskevich, N.J.Petela, J.Metson, M.Voulgaris, A.Gonzalez Llamazares, J.Lowe, K.A.Nasmyth. Transport of Dna Within Cohesin Involves Clamping on Top of Engaged Heads By SCC2 and Entrapment Within the Ring By SCC3. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32930661
DOI: 10.7554/ELIFE.59560