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Magnesium in PDB 6zz6: Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex (pdb code 6zz6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex, PDB code: 6zz6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6zz6

Go back to Magnesium Binding Sites List in 6zz6
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:34.6
occ:1.00
O2G A:ATP2000 2.0 46.0 1.0
OG A:SER40 2.0 35.6 1.0
O2B A:ATP2000 2.1 46.0 1.0
OE1 A:GLN151 2.1 31.0 1.0
PB A:ATP2000 2.7 46.0 1.0
O1B A:ATP2000 2.8 46.0 1.0
CD A:GLN151 3.2 31.0 1.0
PG A:ATP2000 3.3 46.0 1.0
O3B A:ATP2000 3.4 46.0 1.0
CB A:SER40 3.4 35.6 1.0
OD1 A:ASP1157 3.7 31.1 1.0
NE2 A:GLN151 3.9 31.0 1.0
O3G A:ATP2000 4.1 46.0 1.0
O3A A:ATP2000 4.2 46.0 1.0
N A:SER40 4.2 35.6 1.0
CA A:SER40 4.2 35.6 1.0
CG A:GLN151 4.3 31.0 1.0
CB A:GLN151 4.3 31.0 1.0
OD2 A:ASP1157 4.4 31.1 1.0
O1G A:ATP2000 4.4 46.0 1.0
CG A:ASP1157 4.4 31.1 1.0
O1A A:ATP2000 4.7 46.0 1.0
PA A:ATP2000 4.8 46.0 1.0
N B:GLY1128 4.9 23.8 1.0
O2A A:ATP2000 5.0 46.0 1.0

Magnesium binding site 2 out of 2 in 6zz6

Go back to Magnesium Binding Sites List in 6zz6
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of S.Cerevisiae Cohesin-SCC2-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2001

b:19.6
occ:1.00
OE1 B:GLN148 2.2 14.9 1.0
CB B:SER39 2.5 15.2 1.0
OG B:SER39 2.6 15.2 1.0
O1G B:ATP2000 3.2 20.1 1.0
O3B B:ATP2000 3.2 20.1 1.0
O2A B:ATP2000 3.3 20.1 1.0
CD B:GLN148 3.4 14.9 1.0
PG B:ATP2000 3.6 20.1 1.0
O2G B:ATP2000 3.6 20.1 1.0
O3A B:ATP2000 3.9 20.1 1.0
OD2 B:ASP1154 3.9 16.4 1.0
CA B:SER39 4.0 15.2 1.0
PB B:ATP2000 4.1 20.1 1.0
NE2 B:GLN148 4.2 14.9 1.0
PA B:ATP2000 4.3 20.1 1.0
CB B:GLN148 4.3 14.9 1.0
O1B B:ATP2000 4.5 20.1 1.0
CG B:GLN148 4.5 14.9 1.0
N B:SER39 4.5 15.2 1.0
N A:GLY1131 4.6 17.4 1.0
OG A:SER1130 4.7 19.9 1.0
CG B:ASP1154 4.7 16.4 1.0
OD1 B:ASP1154 4.9 16.4 1.0
C B:SER39 5.0 15.2 1.0

Reference:

J.E.Collier, B.G.Lee, M.B.Roig, S.Yatskevich, N.J.Petela, J.Metson, M.Voulgaris, A.Gonzalez Llamazares, J.Lowe, K.A.Nasmyth. Transport of Dna Within Cohesin Involves Clamping on Top of Engaged Heads By SCC2 and Entrapment Within the Ring By SCC3. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32930661
DOI: 10.7554/ELIFE.59560
Page generated: Wed Oct 2 03:19:10 2024

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