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Magnesium in PDB 6zzx: Structure of Low-Light Grown Chlorella Ohadii Photosystem I

Enzymatic activity of Structure of Low-Light Grown Chlorella Ohadii Photosystem I

All present enzymatic activity of Structure of Low-Light Grown Chlorella Ohadii Photosystem I:
1.97.1.12;

Other elements in 6zzx:

The structure of Structure of Low-Light Grown Chlorella Ohadii Photosystem I also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 255 in 6zzx

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Magnesium binding site 1 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1011

b:26.9
occ:1.00
MG A:CL01011 0.0 26.9 1.0
ND A:CL01011 2.0 26.9 1.0
NB A:CL01011 2.1 26.9 1.0
NC A:CL01011 2.1 26.9 1.0
NA A:CL01011 2.3 26.9 1.0
NE2 A:HIS676 3.0 14.3 1.0
C4D A:CL01011 3.0 26.9 1.0
C4B A:CL01011 3.0 26.9 1.0
C1B A:CL01011 3.1 26.9 1.0
C1C A:CL01011 3.1 26.9 1.0
C1D A:CL01011 3.1 26.9 1.0
C4A A:CL01011 3.2 26.9 1.0
C4C A:CL01011 3.2 26.9 1.0
C1A A:CL01011 3.2 26.9 1.0
CHC A:CL01011 3.4 26.9 1.0
CHB A:CL01011 3.4 26.9 1.0
CHA A:CL01011 3.5 26.9 1.0
CHD A:CL01011 3.6 26.9 1.0
CBB B:CLA1021 3.6 26.9 1.0
CHC B:CLA1021 3.8 26.9 1.0
CE1 A:HIS676 3.8 14.3 1.0
C4B B:CLA1021 3.9 26.9 1.0
CD2 A:HIS676 3.9 14.3 1.0
C3B B:CLA1021 4.0 26.9 1.0
CAB B:CLA1021 4.1 26.9 1.0
C3D A:CL01011 4.2 26.9 1.0
C3B A:CL01011 4.3 26.9 1.0
C2B A:CL01011 4.4 26.9 1.0
C2D A:CL01011 4.4 26.9 1.0
C2C A:CL01011 4.4 26.9 1.0
C1C B:CLA1021 4.4 26.9 1.0
C3C A:CL01011 4.4 26.9 1.0
C3A A:CL01011 4.5 26.9 1.0
NB B:CLA1021 4.5 26.9 1.0
C2A A:CL01011 4.6 26.9 1.0
C2B B:CLA1021 4.7 26.9 1.0

Magnesium binding site 2 out of 255 in 6zzx

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Magnesium binding site 2 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1012

b:12.3
occ:1.00
MG A:CLA1012 0.0 12.3 1.0
ND A:CLA1012 2.0 12.3 1.0
NB A:CLA1012 2.0 12.3 1.0
NC A:CLA1012 2.1 12.3 1.0
NA A:CLA1012 2.2 12.3 1.0
C4D A:CLA1012 2.9 12.3 1.0
C4B A:CLA1012 3.0 12.3 1.0
C1C A:CLA1012 3.0 12.3 1.0
C1B A:CLA1012 3.1 12.3 1.0
C1D A:CLA1012 3.1 12.3 1.0
C4A A:CLA1012 3.1 12.3 1.0
C4C A:CLA1012 3.2 12.3 1.0
C1A A:CLA1012 3.2 12.3 1.0
CBB A:CLA1013 3.2 12.9 1.0
CHC A:CLA1012 3.3 12.3 1.0
CHB A:CLA1012 3.4 12.3 1.0
CHA A:CLA1012 3.5 12.3 1.0
CHD A:CLA1012 3.5 12.3 1.0
CAB A:CLA1013 4.1 12.9 1.0
C3D A:CLA1012 4.1 12.3 1.0
C3B A:CLA1012 4.2 12.3 1.0
C2D A:CLA1012 4.3 12.3 1.0
C2B A:CLA1012 4.3 12.3 1.0
OD1 B:ASN586 4.3 13.5 1.0
C2C A:CLA1012 4.4 12.3 1.0
C3C A:CLA1012 4.4 12.3 1.0
CB A:ALA680 4.4 10.8 1.0
C3A A:CLA1012 4.5 12.3 1.0
C2A A:CLA1012 4.5 12.3 1.0
CZ2 B:TRP590 4.9 14.4 1.0
C3B A:CLA1013 4.9 12.9 1.0
CBD A:CLA1012 4.9 12.3 1.0
C2 B:CLA1021 5.0 26.9 1.0

Magnesium binding site 3 out of 255 in 6zzx

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Magnesium binding site 3 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1013

b:12.9
occ:1.00
MG A:CLA1013 0.0 12.9 1.0
ND A:CLA1013 2.0 12.9 1.0
NB A:CLA1013 2.0 12.9 1.0
NC A:CLA1013 2.1 12.9 1.0
NA A:CLA1013 2.2 12.9 1.0
C4D A:CLA1013 2.9 12.9 1.0
C4B A:CLA1013 3.0 12.9 1.0
C1C A:CLA1013 3.0 12.9 1.0
C1B A:CLA1013 3.1 12.9 1.0
C1D A:CLA1013 3.1 12.9 1.0
C4A A:CLA1013 3.1 12.9 1.0
C4C A:CLA1013 3.2 12.9 1.0
C1A A:CLA1013 3.2 12.9 1.0
SD A:MET684 3.2 10.9 1.0
CHC A:CLA1013 3.3 12.9 1.0
NE1 B:TRP583 3.3 12.1 1.0
CHB A:CLA1013 3.4 12.9 1.0
CHA A:CLA1013 3.5 12.9 1.0
CHD A:CLA1013 3.5 12.9 1.0
CZ2 B:TRP583 3.9 12.1 1.0
CG A:MET684 3.9 10.9 1.0
CE2 B:TRP583 4.0 12.1 1.0
CE A:MET684 4.0 10.9 1.0
C3D A:CLA1013 4.2 12.9 1.0
CB A:MET684 4.2 10.9 1.0
C3B A:CLA1013 4.2 12.9 1.0
C2B A:CLA1013 4.3 12.9 1.0
C2D A:CLA1013 4.3 12.9 1.0
C2C A:CLA1013 4.4 12.9 1.0
C3C A:CLA1013 4.4 12.9 1.0
C3A A:CLA1013 4.5 12.9 1.0
CD1 B:TRP583 4.5 12.1 1.0
C2A A:CLA1013 4.5 12.9 1.0
CMC A:CLA1012 4.8 12.3 1.0
CBD A:CLA1013 4.9 12.9 1.0

Magnesium binding site 4 out of 255 in 6zzx

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Magnesium binding site 4 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1102

b:17.1
occ:1.00
MG A:CLA1102 0.0 17.1 1.0
ND A:CLA1102 2.0 17.1 1.0
NB A:CLA1102 2.0 17.1 1.0
NC A:CLA1102 2.1 17.1 1.0
NA A:CLA1102 2.2 17.1 1.0
C4D A:CLA1102 2.9 17.1 1.0
NE2 A:HIS57 2.9 17.1 1.0
C4B A:CLA1102 3.0 17.1 1.0
C1C A:CLA1102 3.0 17.1 1.0
C1B A:CLA1102 3.1 17.1 1.0
C1D A:CLA1102 3.1 17.1 1.0
C4A A:CLA1102 3.1 17.1 1.0
C4C A:CLA1102 3.2 17.1 1.0
C1A A:CLA1102 3.2 17.1 1.0
CHC A:CLA1102 3.3 17.1 1.0
CHB A:CLA1102 3.4 17.1 1.0
CHA A:CLA1102 3.5 17.1 1.0
C7 A:CLA1109 3.5 17.8 1.0
CHD A:CLA1102 3.5 17.1 1.0
CD2 A:HIS57 3.9 17.1 1.0
CE1 A:HIS57 3.9 17.1 1.0
C6 A:CLA1109 4.1 17.8 1.0
C3D A:CLA1102 4.2 17.1 1.0
C10 A:CLA1109 4.2 17.8 1.0
C8 A:CLA1109 4.2 17.8 1.0
C3B A:CLA1102 4.3 17.1 1.0
C2B A:CLA1102 4.3 17.1 1.0
C2D A:CLA1102 4.3 17.1 1.0
C2C A:CLA1102 4.4 17.1 1.0
C3C A:CLA1102 4.4 17.1 1.0
C9 A:CLA1109 4.4 17.8 1.0
C3A A:CLA1102 4.5 17.1 1.0
C2A A:CLA1102 4.5 17.1 1.0
CBB A:CLA1101 4.7 20.2 1.0
CBD A:CLA1102 4.9 17.1 1.0

Magnesium binding site 5 out of 255 in 6zzx

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Magnesium binding site 5 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1103

b:14.5
occ:1.00
MG A:CLA1103 0.0 14.5 1.0
ND A:CLA1103 2.0 14.5 1.0
NB A:CLA1103 2.0 14.5 1.0
NC A:CLA1103 2.1 14.5 1.0
NA A:CLA1103 2.2 14.5 1.0
NE2 A:HIS77 2.9 13.4 1.0
C4D A:CLA1103 2.9 14.5 1.0
C4B A:CLA1103 3.0 14.5 1.0
C1C A:CLA1103 3.0 14.5 1.0
C1B A:CLA1103 3.1 14.5 1.0
C1D A:CLA1103 3.1 14.5 1.0
CMB A:CLA1128 3.1 14.9 1.0
C4A A:CLA1103 3.2 14.5 1.0
C1A A:CLA1103 3.2 14.5 1.0
C4C A:CLA1103 3.2 14.5 1.0
CHC A:CLA1103 3.3 14.5 1.0
CHB A:CLA1103 3.4 14.5 1.0
CD2 A:HIS77 3.4 13.4 1.0
CHA A:CLA1103 3.4 14.5 1.0
CHD A:CLA1103 3.5 14.5 1.0
CE1 A:HIS77 4.0 13.4 1.0
C3D A:CLA1103 4.2 14.5 1.0
C3B A:CLA1103 4.3 14.5 1.0
C2B A:CLA1103 4.3 14.5 1.0
C2D A:CLA1103 4.3 14.5 1.0
CBB A:CLA1128 4.3 14.9 1.0
C2C A:CLA1103 4.4 14.5 1.0
C3C A:CLA1103 4.4 14.5 1.0
C3A A:CLA1103 4.5 14.5 1.0
C2A A:CLA1103 4.5 14.5 1.0
C2B A:CLA1128 4.5 14.9 1.0
CG1 A:VAL73 4.7 14.5 1.0
CG A:HIS77 4.7 13.4 1.0
CBD A:CLA1103 4.9 14.5 1.0
ND1 A:HIS77 4.9 13.4 1.0

Magnesium binding site 6 out of 255 in 6zzx

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Magnesium binding site 6 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1104

b:13.9
occ:1.00
MG A:CLA1104 0.0 13.9 1.0
ND A:CLA1104 2.0 13.9 1.0
NB A:CLA1104 2.0 13.9 1.0
NC A:CLA1104 2.1 13.9 1.0
NA A:CLA1104 2.2 13.9 1.0
OE1 A:GLN80 2.9 13.0 1.0
C4D A:CLA1104 2.9 13.9 1.0
C4B A:CLA1104 3.0 13.9 1.0
C1C A:CLA1104 3.0 13.9 1.0
C1B A:CLA1104 3.1 13.9 1.0
C1D A:CLA1104 3.1 13.9 1.0
C4A A:CLA1104 3.2 13.9 1.0
C4C A:CLA1104 3.2 13.9 1.0
C1A A:CLA1104 3.2 13.9 1.0
CHC A:CLA1104 3.3 13.9 1.0
C16 A:CLA1104 3.3 13.9 1.0
CHB A:CLA1104 3.4 13.9 1.0
CHA A:CLA1104 3.5 13.9 1.0
CHD A:CLA1104 3.5 13.9 1.0
C17 A:CLA1104 3.7 13.9 1.0
C18 A:CLA1104 3.7 13.9 1.0
CD A:GLN80 3.8 13.0 1.0
NE2 A:GLN80 4.0 13.0 1.0
C3D A:CLA1104 4.2 13.9 1.0
C3B A:CLA1104 4.2 13.9 1.0
C2B A:CLA1104 4.3 13.9 1.0
C2D A:CLA1104 4.3 13.9 1.0
C2C A:CLA1104 4.4 13.9 1.0
C19 A:CLA1104 4.4 13.9 1.0
C3C A:CLA1104 4.4 13.9 1.0
C3A A:CLA1104 4.5 13.9 1.0
C15 A:CLA1104 4.5 13.9 1.0
C2A A:CLA1104 4.5 13.9 1.0
CMA A:CLA1103 4.8 14.5 1.0
C20 A:CLA1104 4.9 13.9 1.0
CBD A:CLA1104 4.9 13.9 1.0

Magnesium binding site 7 out of 255 in 6zzx

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Magnesium binding site 7 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1105

b:20.1
occ:1.00
MG A:CLA1105 0.0 20.1 1.0
ND A:CLA1105 2.0 20.1 1.0
NB A:CLA1105 2.0 20.1 1.0
NC A:CLA1105 2.1 20.1 1.0
NA A:CLA1105 2.2 20.1 1.0
C4D A:CLA1105 2.9 20.1 1.0
NE2 A:HIS94 2.9 17.7 1.0
C4B A:CLA1105 3.0 20.1 1.0
C1C A:CLA1105 3.0 20.1 1.0
C1B A:CLA1105 3.1 20.1 1.0
C1D A:CLA1105 3.1 20.1 1.0
C4A A:CLA1105 3.2 20.1 1.0
C1A A:CLA1105 3.2 20.1 1.0
C4C A:CLA1105 3.2 20.1 1.0
CHC A:CLA1105 3.3 20.1 1.0
CHB A:CLA1105 3.4 20.1 1.0
CHA A:CLA1105 3.5 20.1 1.0
CHD A:CLA1105 3.5 20.1 1.0
C14 A:SQD5005 3.6 27.7 1.0
C15 A:SQD5005 3.6 27.7 1.0
CD2 A:HIS94 3.7 17.7 1.0
CE1 A:HIS94 4.0 17.7 1.0
C3D A:CLA1105 4.2 20.1 1.0
C3B A:CLA1105 4.3 20.1 1.0
C2B A:CLA1105 4.3 20.1 1.0
C2D A:CLA1105 4.3 20.1 1.0
C16 A:SQD5005 4.3 27.7 1.0
C2C A:CLA1105 4.4 20.1 1.0
C3C A:CLA1105 4.4 20.1 1.0
C3A A:CLA1105 4.5 20.1 1.0
C2A A:CLA1105 4.5 20.1 1.0
C17 A:SQD5005 4.8 27.7 1.0
CBD A:CLA1105 4.9 20.1 1.0
CG A:HIS94 4.9 17.7 1.0
CBA A:CLA1105 5.0 20.1 1.0
C13 A:SQD5005 5.0 27.7 1.0

Magnesium binding site 8 out of 255 in 6zzx

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Magnesium binding site 8 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1106

b:12.5
occ:1.00
MG A:CLA1106 0.0 12.5 1.0
ND A:CLA1106 2.0 12.5 1.0
NB A:CLA1106 2.0 12.5 1.0
NC A:CLA1106 2.1 12.5 1.0
NA A:CLA1106 2.2 12.5 1.0
OE1 A:GLN116 2.9 18.3 1.0
C4D A:CLA1106 2.9 12.5 1.0
C4B A:CLA1106 3.0 12.5 1.0
C1C A:CLA1106 3.0 12.5 1.0
C1B A:CLA1106 3.1 12.5 1.0
C1D A:CLA1106 3.1 12.5 1.0
C4A A:CLA1106 3.2 12.5 1.0
C1A A:CLA1106 3.2 12.5 1.0
C4C A:CLA1106 3.2 12.5 1.0
CHC A:CLA1106 3.3 12.5 1.0
CHB A:CLA1106 3.4 12.5 1.0
CHA A:CLA1106 3.5 12.5 1.0
CHD A:CLA1106 3.5 12.5 1.0
CD A:GLN116 3.8 18.3 1.0
C2 A:CLA1126 3.8 14.4 1.0
NE2 A:GLN116 4.0 18.3 1.0
C6 A:CLA1126 4.0 14.4 1.0
C3D A:CLA1106 4.2 12.5 1.0
C3B A:CLA1106 4.3 12.5 1.0
C2B A:CLA1106 4.3 12.5 1.0
C2D A:CLA1106 4.3 12.5 1.0
C2C A:CLA1106 4.4 12.5 1.0
C3C A:CLA1106 4.4 12.5 1.0
C1 A:CLA1126 4.4 14.4 1.0
C7 A:CLA1126 4.4 14.4 1.0
C3A A:CLA1106 4.5 12.5 1.0
C2A A:CLA1106 4.5 12.5 1.0
C3 A:CLA1126 4.7 14.4 1.0
O1A A:CLA1106 4.8 12.5 1.0
C5 A:CLA1126 4.9 14.4 1.0
CD2 A:LEU138 4.9 17.9 1.0
CBD A:CLA1106 4.9 12.5 1.0

Magnesium binding site 9 out of 255 in 6zzx

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Magnesium binding site 9 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1107

b:17.1
occ:1.00
MG A:CLA1107 0.0 17.1 1.0
ND A:CLA1107 2.0 17.1 1.0
NB A:CLA1107 2.0 17.1 1.0
NC A:CLA1107 2.1 17.1 1.0
NA A:CLA1107 2.2 17.1 1.0
OE1 A:GLN124 2.7 17.4 1.0
C4D A:CLA1107 2.9 17.1 1.0
C4B A:CLA1107 3.0 17.1 1.0
C1C A:CLA1107 3.0 17.1 1.0
C1B A:CLA1107 3.1 17.1 1.0
C1D A:CLA1107 3.1 17.1 1.0
C4A A:CLA1107 3.2 17.1 1.0
C4C A:CLA1107 3.2 17.1 1.0
C1A A:CLA1107 3.2 17.1 1.0
CHC A:CLA1107 3.3 17.1 1.0
CHB A:CLA1107 3.4 17.1 1.0
C20 A:CLA1126 3.5 14.4 1.0
CHA A:CLA1107 3.5 17.1 1.0
CHD A:CLA1107 3.5 17.1 1.0
CD A:GLN124 3.9 17.4 1.0
C3D A:CLA1107 4.1 17.1 1.0
C3B A:CLA1107 4.2 17.1 1.0
C2B A:CLA1107 4.3 17.1 1.0
C2D A:CLA1107 4.3 17.1 1.0
C2C A:CLA1107 4.4 17.1 1.0
C3C A:CLA1107 4.4 17.1 1.0
NE2 A:GLN124 4.5 17.4 1.0
C3A A:CLA1107 4.5 17.1 1.0
C2A A:CLA1107 4.5 17.1 1.0
C18 A:CLA1126 4.6 14.4 1.0
C19 A:CLA1126 4.9 14.4 1.0
CBD A:CLA1107 4.9 17.1 1.0
C17 A:CLA1126 5.0 14.4 1.0

Magnesium binding site 10 out of 255 in 6zzx

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Magnesium binding site 10 out of 255 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1108

b:16.9
occ:1.00
MG A:CLA1108 0.0 16.9 1.0
ND A:CLA1108 2.0 16.9 1.0
NB A:CLA1108 2.0 16.9 1.0
NC A:CLA1108 2.1 16.9 1.0
NA A:CLA1108 2.2 16.9 1.0
C4D A:CLA1108 2.9 16.9 1.0
C4B A:CLA1108 3.0 16.9 1.0
CE1 A:HIS180 3.0 15.6 1.0
C1C A:CLA1108 3.0 16.9 1.0
C1B A:CLA1108 3.1 16.9 1.0
C1D A:CLA1108 3.1 16.9 1.0
C4A A:CLA1108 3.2 16.9 1.0
C1A A:CLA1108 3.2 16.9 1.0
C4C A:CLA1108 3.2 16.9 1.0
CHC A:CLA1108 3.3 16.9 1.0
NE2 A:HIS180 3.3 15.6 1.0
C19 A:CLA1111 3.4 15.9 1.0
CHB A:CLA1108 3.5 16.9 1.0
CHA A:CLA1108 3.5 16.9 1.0
CHD A:CLA1108 3.5 16.9 1.0
C17 A:CLA1111 3.8 15.9 1.0
C18 A:CLA1111 4.0 15.9 1.0
C3D A:CLA1108 4.2 16.9 1.0
C3B A:CLA1108 4.3 16.9 1.0
ND1 A:HIS180 4.3 15.6 1.0
C2B A:CLA1108 4.3 16.9 1.0
C20 A:CLA1111 4.3 15.9 1.0
C2D A:CLA1108 4.3 16.9 1.0
C2C A:CLA1108 4.4 16.9 1.0
C3C A:CLA1108 4.4 16.9 1.0
C3A A:CLA1108 4.5 16.9 1.0
C2A A:CLA1108 4.5 16.9 1.0
CD2 A:HIS180 4.7 15.6 1.0
CBA A:CLA1108 4.9 16.9 1.0
CBD A:CLA1108 4.9 16.9 1.0

Reference:

I.Caspy, N.Nelson, R.Nechushtai, E.Neumann, Y.Shkolnisky. Structural and Functional Alterations in Photosystem I of Chlorella Ohadii Grown at High and Low Light Conditions To Be Published.
Page generated: Wed Oct 2 03:20:19 2024

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