Magnesium in PDB 7a1g: Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex

Other elements in 7a1g:

The structure of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iron (Fe) 8 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 7a1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 80 binding sites of Magnesium where determined in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 7a1g:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 80 in 7a1g

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Magnesium binding site 1 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1801

b:2.0
occ:1.00
O6 2:G1295 3.5 5.0 1.0
MG 2:MG1867 3.5 5.0 1.0
O6 2:G1294 4.1 5.0 1.0
N7 2:G1295 4.1 5.0 1.0
N7 2:G1294 4.1 5.0 1.0
C6 2:G1295 4.4 5.0 1.0
O4 2:U1302 4.4 5.0 1.0
N6 2:A1296 4.5 5.0 1.0
C6 2:G1294 4.6 5.0 1.0
C5 2:G1295 4.6 5.0 1.0
C5 2:G1294 4.6 5.0 1.0

Magnesium binding site 2 out of 80 in 7a1g

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Magnesium binding site 2 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:

Magnesium binding site 3 out of 80 in 7a1g

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Magnesium binding site 3 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1803

b:3.8
occ:1.00
N7 2:G123 3.3 5.0 1.0
C5 2:U122 4.1 5.0 1.0
C8 2:G123 4.1 5.0 1.0
C4 2:U122 4.2 5.0 1.0
O6 2:G123 4.2 5.0 1.0
C5 2:G123 4.2 5.0 1.0
O4 2:U122 4.2 5.0 1.0
C6 2:G123 4.6 5.0 1.0
C6 2:U122 4.7 5.0 1.0
N7 2:A124 4.7 5.0 1.0
N3 2:U122 4.9 5.0 1.0
N6 2:A124 5.0 5.0 1.0

Magnesium binding site 4 out of 80 in 7a1g

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Magnesium binding site 4 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1804

b:1.3
occ:1.00
O6 2:G383 4.0 5.0 1.0
O6 2:G384 4.2 5.0 1.0
N4 2:C382 4.4 5.0 1.0
OP1 2:U380 4.5 5.0 1.0
N7 2:G383 4.6 5.0 1.0
O4 2:U98 4.6 5.0 1.0
C5 2:C382 4.7 5.0 1.0
N4 2:C99 4.8 5.0 1.0
C6 2:G383 4.9 5.0 1.0
C4 2:C382 4.9 5.0 1.0

Magnesium binding site 5 out of 80 in 7a1g

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Magnesium binding site 5 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1805

b:5.0
occ:1.00
OP2 2:U101 2.1 5.0 1.0
OP2 2:C361 2.1 5.0 1.0
OP2 2:A100 2.4 5.0 1.0
P 2:U101 3.5 5.0 1.0
P 2:C361 3.5 5.0 1.0
O4 2:U102 3.6 5.0 1.0
P 2:A100 3.9 5.0 1.0
C3' 2:A360 4.1 5.0 1.0
O3' 2:A360 4.2 5.0 1.0
OP1 2:C361 4.3 5.0 1.0
O5' 2:U101 4.3 5.0 1.0
OP1 2:U101 4.3 5.0 1.0
O3' 2:A100 4.4 5.0 1.0
C4 2:U102 4.5 5.0 1.0
C3' 2:A100 4.5 5.0 1.0
O3' 2:C99 4.5 5.0 1.0
OP2 2:A359 4.6 5.0 1.0
O5' 2:C361 4.6 5.0 1.0
C5 2:U102 4.7 5.0 1.0
O5' 2:A100 4.7 5.0 1.0
C5 2:U101 4.7 5.0 1.0
C5' 2:A100 4.7 5.0 1.0
OP1 2:A100 4.7 5.0 1.0
C5' 2:C361 4.9 5.0 1.0
C2' 2:A360 4.9 5.0 1.0
C8 2:A360 5.0 5.0 1.0

Magnesium binding site 6 out of 80 in 7a1g

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Magnesium binding site 6 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1806

b:5.0
occ:1.00
OP2 2:C424 2.2 5.0 1.0
P 2:C424 3.6 5.0 1.0
O4' 2:G403 3.9 5.0 1.0
OP2 2:G403 4.0 5.0 1.0
O5' 2:C424 4.1 5.0 1.0
N7 2:G426 4.3 5.0 1.0
OP1 2:C424 4.4 5.0 1.0
N1 2:A55 4.6 5.0 1.0
O3' 2:G423 4.6 5.0 1.0
C8 2:G426 4.7 5.0 1.0
O4' 2:C424 4.7 5.0 1.0
C5' 2:G403 4.8 5.0 1.0
C4' 2:G403 4.8 5.0 1.0
C1' 2:G403 4.9 5.0 1.0
C3' 2:G423 4.9 5.0 1.0
C8 2:G403 4.9 5.0 1.0

Magnesium binding site 7 out of 80 in 7a1g

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Magnesium binding site 7 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1807

b:2.1
occ:1.00
OP2 2:C49 2.5 5.0 1.0
P 2:C49 3.8 5.0 1.0
OP1 2:A425 3.9 5.0 1.0
C5' 2:G388 4.3 5.0 1.0
N7 2:A425 4.3 5.0 1.0
O5' 2:C49 4.4 5.0 1.0
C4' 2:G388 4.4 5.0 1.0
OP1 2:C49 4.6 5.0 1.0
O4' 2:G388 4.6 5.0 1.0
C8 2:A425 4.8 5.0 1.0
O3' 2:C424 4.9 5.0 1.0
O3' 2:G48 5.0 5.0 1.0

Magnesium binding site 8 out of 80 in 7a1g

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Magnesium binding site 8 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1808

b:2.3
occ:1.00
OP1 2:A100 2.2 5.0 1.0
P 2:A100 3.6 5.0 1.0
OP1 2:C361 4.0 5.0 1.0
C3' 2:C99 4.2 5.0 1.0
OP2 2:A100 4.3 5.0 1.0
O2' 2:A43 4.3 5.0 1.0
O3' 2:C99 4.3 5.0 1.0
C4' 2:U44 4.4 5.0 1.0
C5' 2:U44 4.6 5.0 1.0
O5' 2:A100 4.6 5.0 1.0
O4' 2:U44 4.9 5.0 1.0

Magnesium binding site 9 out of 80 in 7a1g

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Magnesium binding site 9 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1809

b:5.0
occ:1.00
OP1 2:C402 3.1 5.0 1.0
OP2 2:C402 3.4 5.0 1.0
P 2:C402 3.7 5.0 1.0
N7 2:G386 4.4 5.0 1.0
OP2 2:G386 4.4 5.0 1.0
OP1 2:A400 4.5 5.0 1.0
C8 2:G386 4.6 5.0 1.0
O3' 2:A401 4.7 5.0 1.0
NE S:ARG3 4.7 5.0 1.0
N7 2:A387 4.9 5.0 1.0
OP2 2:A387 4.9 5.0 1.0
C4' 2:A401 5.0 5.0 1.0
CD S:ARG3 5.0 5.0 1.0
O5' 2:A401 5.0 5.0 1.0

Magnesium binding site 10 out of 80 in 7a1g

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Magnesium binding site 10 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1810

b:5.0
occ:1.00
OP1 2:A401 2.6 5.0 1.0
P 2:A401 3.9 5.0 1.0
O2 2:C402 3.9 5.0 1.0
O4' 2:C402 4.2 5.0 1.0
O6 2:G392 4.2 5.0 1.0
O6 2:G404 4.3 5.0 1.0
C2 2:C402 4.3 5.0 1.0
N4 2:C405 4.4 5.0 1.0
OP2 2:A401 4.4 5.0 1.0
C1' 2:C402 4.7 5.0 1.0
N1 2:C402 4.7 5.0 1.0
OP1 2:A387 4.7 5.0 1.0
O5' 2:A401 4.7 5.0 1.0
N3 2:C402 4.9 5.0 1.0
O3' 2:A400 4.9 5.0 1.0
C3' 2:A401 5.0 5.0 1.0
N6 2:A391 5.0 5.0 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Tue Dec 15 03:19:51 2020

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