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Magnesium in PDB 7a1g: Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex

Other elements in 7a1g:

The structure of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iron (Fe) 8 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 7a1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 80 binding sites of Magnesium where determined in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 7a1g:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 80 in 7a1g

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Magnesium binding site 1 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1801

b:2.0
occ:1.00
O6 2:G1295 3.5 5.0 1.0
MG 2:MG1867 3.5 5.0 1.0
O6 2:G1294 4.1 5.0 1.0
N7 2:G1295 4.1 5.0 1.0
N7 2:G1294 4.1 5.0 1.0
C6 2:G1295 4.4 5.0 1.0
O4 2:U1302 4.4 5.0 1.0
N6 2:A1296 4.5 5.0 1.0
C6 2:G1294 4.6 5.0 1.0
C5 2:G1295 4.6 5.0 1.0
C5 2:G1294 4.6 5.0 1.0

Magnesium binding site 2 out of 80 in 7a1g

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Magnesium binding site 2 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:

Magnesium binding site 3 out of 80 in 7a1g

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Magnesium binding site 3 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1803

b:3.8
occ:1.00
N7 2:G123 3.3 5.0 1.0
C5 2:U122 4.1 5.0 1.0
C8 2:G123 4.1 5.0 1.0
C4 2:U122 4.2 5.0 1.0
O6 2:G123 4.2 5.0 1.0
C5 2:G123 4.2 5.0 1.0
O4 2:U122 4.2 5.0 1.0
C6 2:G123 4.6 5.0 1.0
C6 2:U122 4.7 5.0 1.0
N7 2:A124 4.7 5.0 1.0
N3 2:U122 4.9 5.0 1.0
N6 2:A124 5.0 5.0 1.0

Magnesium binding site 4 out of 80 in 7a1g

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Magnesium binding site 4 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1804

b:1.3
occ:1.00
O6 2:G383 4.0 5.0 1.0
O6 2:G384 4.2 5.0 1.0
N4 2:C382 4.4 5.0 1.0
OP1 2:U380 4.5 5.0 1.0
N7 2:G383 4.6 5.0 1.0
O4 2:U98 4.6 5.0 1.0
C5 2:C382 4.7 5.0 1.0
N4 2:C99 4.8 5.0 1.0
C6 2:G383 4.9 5.0 1.0
C4 2:C382 4.9 5.0 1.0

Magnesium binding site 5 out of 80 in 7a1g

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Magnesium binding site 5 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1805

b:5.0
occ:1.00
OP2 2:U101 2.1 5.0 1.0
OP2 2:C361 2.1 5.0 1.0
OP2 2:A100 2.4 5.0 1.0
P 2:U101 3.5 5.0 1.0
P 2:C361 3.5 5.0 1.0
O4 2:U102 3.6 5.0 1.0
P 2:A100 3.9 5.0 1.0
C3' 2:A360 4.1 5.0 1.0
O3' 2:A360 4.2 5.0 1.0
OP1 2:C361 4.3 5.0 1.0
O5' 2:U101 4.3 5.0 1.0
OP1 2:U101 4.3 5.0 1.0
O3' 2:A100 4.4 5.0 1.0
C4 2:U102 4.5 5.0 1.0
C3' 2:A100 4.5 5.0 1.0
O3' 2:C99 4.5 5.0 1.0
OP2 2:A359 4.6 5.0 1.0
O5' 2:C361 4.6 5.0 1.0
C5 2:U102 4.7 5.0 1.0
O5' 2:A100 4.7 5.0 1.0
C5 2:U101 4.7 5.0 1.0
C5' 2:A100 4.7 5.0 1.0
OP1 2:A100 4.7 5.0 1.0
C5' 2:C361 4.9 5.0 1.0
C2' 2:A360 4.9 5.0 1.0
C8 2:A360 5.0 5.0 1.0

Magnesium binding site 6 out of 80 in 7a1g

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Magnesium binding site 6 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1806

b:5.0
occ:1.00
OP2 2:C424 2.2 5.0 1.0
P 2:C424 3.6 5.0 1.0
O4' 2:G403 3.9 5.0 1.0
OP2 2:G403 4.0 5.0 1.0
O5' 2:C424 4.1 5.0 1.0
N7 2:G426 4.3 5.0 1.0
OP1 2:C424 4.4 5.0 1.0
N1 2:A55 4.6 5.0 1.0
O3' 2:G423 4.6 5.0 1.0
C8 2:G426 4.7 5.0 1.0
O4' 2:C424 4.7 5.0 1.0
C5' 2:G403 4.8 5.0 1.0
C4' 2:G403 4.8 5.0 1.0
C1' 2:G403 4.9 5.0 1.0
C3' 2:G423 4.9 5.0 1.0
C8 2:G403 4.9 5.0 1.0

Magnesium binding site 7 out of 80 in 7a1g

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Magnesium binding site 7 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1807

b:2.1
occ:1.00
OP2 2:C49 2.5 5.0 1.0
P 2:C49 3.8 5.0 1.0
OP1 2:A425 3.9 5.0 1.0
C5' 2:G388 4.3 5.0 1.0
N7 2:A425 4.3 5.0 1.0
O5' 2:C49 4.4 5.0 1.0
C4' 2:G388 4.4 5.0 1.0
OP1 2:C49 4.6 5.0 1.0
O4' 2:G388 4.6 5.0 1.0
C8 2:A425 4.8 5.0 1.0
O3' 2:C424 4.9 5.0 1.0
O3' 2:G48 5.0 5.0 1.0

Magnesium binding site 8 out of 80 in 7a1g

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Magnesium binding site 8 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1808

b:2.3
occ:1.00
OP1 2:A100 2.2 5.0 1.0
P 2:A100 3.6 5.0 1.0
OP1 2:C361 4.0 5.0 1.0
C3' 2:C99 4.2 5.0 1.0
OP2 2:A100 4.3 5.0 1.0
O2' 2:A43 4.3 5.0 1.0
O3' 2:C99 4.3 5.0 1.0
C4' 2:U44 4.4 5.0 1.0
C5' 2:U44 4.6 5.0 1.0
O5' 2:A100 4.6 5.0 1.0
O4' 2:U44 4.9 5.0 1.0

Magnesium binding site 9 out of 80 in 7a1g

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Magnesium binding site 9 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1809

b:5.0
occ:1.00
OP1 2:C402 3.1 5.0 1.0
OP2 2:C402 3.4 5.0 1.0
P 2:C402 3.7 5.0 1.0
N7 2:G386 4.4 5.0 1.0
OP2 2:G386 4.4 5.0 1.0
OP1 2:A400 4.5 5.0 1.0
C8 2:G386 4.6 5.0 1.0
O3' 2:A401 4.7 5.0 1.0
NE S:ARG3 4.7 5.0 1.0
N7 2:A387 4.9 5.0 1.0
OP2 2:A387 4.9 5.0 1.0
C4' 2:A401 5.0 5.0 1.0
CD S:ARG3 5.0 5.0 1.0
O5' 2:A401 5.0 5.0 1.0

Magnesium binding site 10 out of 80 in 7a1g

Go back to Magnesium Binding Sites List in 7a1g
Magnesium binding site 10 out of 80 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Mg1810

b:5.0
occ:1.00
OP1 2:A401 2.6 5.0 1.0
P 2:A401 3.9 5.0 1.0
O2 2:C402 3.9 5.0 1.0
O4' 2:C402 4.2 5.0 1.0
O6 2:G392 4.2 5.0 1.0
O6 2:G404 4.3 5.0 1.0
C2 2:C402 4.3 5.0 1.0
N4 2:C405 4.4 5.0 1.0
OP2 2:A401 4.4 5.0 1.0
C1' 2:C402 4.7 5.0 1.0
N1 2:C402 4.7 5.0 1.0
OP1 2:A387 4.7 5.0 1.0
O5' 2:A401 4.7 5.0 1.0
N3 2:C402 4.9 5.0 1.0
O3' 2:A400 4.9 5.0 1.0
C3' 2:A401 5.0 5.0 1.0
N6 2:A391 5.0 5.0 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Wed Oct 2 07:40:08 2024

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