Magnesium in PDB 7a7e: Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain

The structure of Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain, PDB code: 7a7e was solved by G.Giardina, S.Rinaldo, F.Mantoni, P.Brunotti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.642, 85.104, 126.975, 90, 90, 90
R / Rfree (%)	21.9 / 22.4

The binding sites of Magnesium atom in the Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain (pdb code 7a7e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain, PDB code: 7a7e:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:55.7 occ:1.00 OD2 A:ASP330 2.3 51.2 1.0 O A:SER288 2.4 55.3 1.0 O A:HOH602 2.9 48.7 1.0 O A:HOH603 3.0 43.2 1.0 O A:HOH601 3.2 50.8 1.0 OD2 A:ASP287 3.2 63.2 1.0 CG A:ASP330 3.4 53.8 1.0 OD1 A:ASP287 3.5 67.5 1.0 NZ A:LYS401 3.5 67.0 1.0 C A:SER288 3.6 51.9 1.0 CG A:ASP287 3.7 64.0 1.0 CB A:PHE291 3.8 51.1 1.0 OD1 A:ASP330 3.9 59.2 1.0 OG A:SER288 4.0 67.8 1.0 CE A:LYS401 4.1 79.4 1.0 N A:PHE291 4.1 53.1 1.0 CA A:ASP289 4.4 61.6 1.0 N A:ASP289 4.4 52.3 1.0 NH1 B:ARG347 4.5 102.3 1.0 N A:SER288 4.5 56.6 1.0 N A:ARG290 4.5 64.5 1.0 CA A:SER288 4.5 57.2 1.0 CB A:ASP330 4.6 50.7 1.0 CA A:PHE291 4.6 53.3 1.0 C A:ASP289 4.6 65.7 1.0 CB A:SER288 4.9 63.5 1.0 CG A:PHE291 5.0 45.9 1.0

Magnesium binding site 2 out of 3 in the Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:71.0 occ:1.00 OD2 B:ASP330 1.9 61.1 1.0 O B:HOH602 2.7 44.4 1.0 O B:HOH601 2.7 41.0 1.0 O B:SER288 2.7 56.4 1.0 OD2 B:ASP287 2.9 84.1 1.0 CG B:ASP330 3.1 55.4 1.0 OD1 B:ASP287 3.2 72.2 1.0 CG B:ASP287 3.4 70.5 1.0 NZ B:LYS401 3.5 83.1 1.0 C B:SER288 3.9 58.8 1.0 OD1 B:ASP330 4.0 49.6 1.0 CB B:ASP330 4.0 49.5 1.0 CB B:PHE291 4.3 58.9 1.0 N B:SER288 4.5 53.5 1.0 N B:PHE291 4.6 74.4 1.0 CA B:SER288 4.7 55.6 1.0 CE B:LYS401 4.8 82.0 1.0 CB B:ASP287 4.8 63.0 1.0 N B:ASP289 4.8 63.1 1.0 N B:ARG290 4.9 82.6 1.0 CA B:ASP289 4.9 72.3 1.0 C B:ASP287 5.0 56.1 1.0 OE2 B:GLU331 5.0 67.5 1.0

Magnesium binding site 3 out of 3 in the Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Delta-N Mutant - E232START - of PA1120 (Tpbb or Yfin) From Pseudomonas Aeruginosa (PAO1) Comprising Only the Ggdef Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:67.9 occ:0.70 O C:HOH602 2.4 51.1 1.0 O C:HOH601 2.5 48.7 1.0 OD2 C:ASP330 2.6 73.0 1.0 O C:SER288 2.9 57.4 1.0 OD2 C:ASP287 3.2 86.8 1.0 OD1 C:ASP287 3.4 79.4 1.0 CG C:ASP287 3.6 72.3 1.0 CG C:ASP330 3.8 70.4 1.0 CB C:PHE291 4.1 68.0 1.0 C C:SER288 4.2 56.4 1.0 OD1 C:ASP330 4.4 65.4 1.0 N C:PHE291 4.6 71.5 1.0 CE C:LYS401 4.7 74.6 1.0 CA C:ASP289 4.7 73.0 1.0 NZ C:LYS401 4.8 73.6 1.0 CB C:ASP330 4.8 67.1 1.0 N C:ARG290 4.9 79.8 1.0 N C:ASP289 4.9 62.2 1.0 N C:SER288 5.0 51.0 1.0 CA C:PHE291 5.0 69.2 1.0

F.Mantoni, C.Scribani Rossi, A.Paiardini, A.Di Matteo, L.Cappellacci, R.Petrelli, M.Ricciutelli, A.Paone, F.Cutruzzola, G.Giardina, S.Rinaldo. Studying Ggdef Domain in the Act: Minimize Conformational Frustration to Prevent Artefacts. Life V. 11 2021.
ISSN: ESSN 2075-1729
PubMed: 33418960
DOI: 10.3390/LIFE11010031