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Magnesium in PDB 7aav: Human Pre-Bact-2 Spliceosome Core Structure

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Pre-Bact-2 Spliceosome Core Structure (pdb code 7aav). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Pre-Bact-2 Spliceosome Core Structure, PDB code: 7aav:

Magnesium binding site 1 out of 1 in 7aav

Go back to Magnesium Binding Sites List in 7aav
Magnesium binding site 1 out of 1 in the Human Pre-Bact-2 Spliceosome Core Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Pre-Bact-2 Spliceosome Core Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
r:Mg1501

b:31.7
occ:1.00
O1G r:GTP1500 2.1 31.6 1.0
O3A r:GTP1500 2.1 31.6 1.0
O2B r:GTP1500 2.2 31.6 1.0
PB r:GTP1500 2.5 31.6 1.0
CB r:THR143 2.7 24.2 1.0
PG r:GTP1500 2.9 31.6 1.0
O3B r:GTP1500 3.0 31.6 1.0
N r:THR143 3.1 24.2 1.0
O3G r:GTP1500 3.2 31.6 1.0
PA r:GTP1500 3.4 31.6 1.0
CA r:THR143 3.4 24.2 1.0
O2A r:GTP1500 3.7 31.6 1.0
O1A r:GTP1500 3.9 31.6 1.0
O1B r:GTP1500 3.9 31.6 1.0
C r:LYS142 4.2 24.4 1.0
O2G r:GTP1500 4.3 31.6 1.0
CB r:LYS142 4.5 24.4 1.0
N r:LYS142 4.5 24.4 1.0
CA r:LYS142 4.6 24.4 1.0
C r:THR143 4.6 24.2 1.0
O5' r:GTP1500 4.6 31.6 1.0
N r:CYS144 4.9 23.5 1.0

Reference:

C.Townsend, M.N.Leelaram, D.E.Agafonov, O.Dybkov, C.L.Will, K.Bertram, H.Urlaub, B.Kastner, H.Stark, R.Luhrmann. Mechanism of Protein-Guided Folding of the Active Site U2/U6 Rna During Spliceosome Activation. Science 2020.
ISSN: ESSN 1095-9203
PubMed: 33243851
DOI: 10.1126/SCIENCE.ABC3753
Page generated: Wed Oct 2 09:08:16 2024

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