Magnesium in PDB 7ad9: Structure of the Lifeact-F-Actin Complex

The binding sites of Magnesium atom in the Structure of the Lifeact-F-Actin Complex (pdb code 7ad9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of the Lifeact-F-Actin Complex, PDB code: 7ad9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Structure of the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Lifeact-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:60.7 occ:1.00 O4 B:PO4403 2.0 61.8 1.0 O1B B:ADP401 2.0 55.7 1.0 P B:PO4403 3.4 61.8 1.0 PB B:ADP401 3.5 55.7 1.0 O1 B:PO4403 3.9 61.8 1.0 O2 B:PO4403 4.0 61.8 1.0 O3B B:ADP401 4.0 55.7 1.0 O1A B:ADP401 4.1 55.7 1.0 OD2 B:ASP154 4.2 52.6 1.0 OD2 B:ASP11 4.2 59.1 1.0 OD1 B:ASP154 4.3 52.6 1.0 OD1 B:ASP11 4.4 59.1 1.0 O3A B:ADP401 4.4 55.7 1.0 O2B B:ADP401 4.4 55.7 1.0 NE2 B:GLN137 4.5 60.8 1.0 O3 B:PO4403 4.6 61.8 1.0 CG B:ASP154 4.7 52.6 1.0 CG B:GLN137 4.7 60.8 1.0 CG B:ASP11 4.7 59.1 1.0 CD B:GLN137 4.8 60.8 1.0 PA B:ADP401 5.0 55.7 1.0 CA B:GLY13 5.0 56.6 1.0

Magnesium binding site 2 out of 5 in the Structure of the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Lifeact-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:58.9 occ:1.00 O4 D:PO4403 2.0 58.7 1.0 O1B D:ADP401 2.0 53.5 1.0 P D:PO4403 3.4 58.7 1.0 PB D:ADP401 3.5 53.5 1.0 O1 D:PO4403 3.9 58.7 1.0 O2 D:PO4403 4.0 58.7 1.0 O3B D:ADP401 4.0 53.5 1.0 O1A D:ADP401 4.1 53.5 1.0 OD2 D:ASP154 4.2 51.8 1.0 OD2 D:ASP11 4.2 61.9 1.0 OD1 D:ASP154 4.3 51.8 1.0 OD1 D:ASP11 4.4 61.9 1.0 O3A D:ADP401 4.4 53.5 1.0 O2B D:ADP401 4.4 53.5 1.0 NE2 D:GLN137 4.5 58.6 1.0 O3 D:PO4403 4.6 58.7 1.0 CG D:ASP154 4.7 51.8 1.0 CG D:GLN137 4.7 58.6 1.0 CG D:ASP11 4.7 61.9 1.0 CD D:GLN137 4.8 58.6 1.0 PA D:ADP401 5.0 53.5 1.0 CA D:GLY13 5.0 56.8 1.0

Magnesium binding site 3 out of 5 in the Structure of the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Lifeact-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:56.4 occ:1.00 O4 H:PO4403 2.0 58.5 1.0 O1B H:ADP401 2.0 49.3 1.0 P H:PO4403 3.4 58.5 1.0 PB H:ADP401 3.5 49.3 1.0 O1 H:PO4403 3.9 58.5 1.0 O2 H:PO4403 4.0 58.5 1.0 O3B H:ADP401 4.0 49.3 1.0 O1A H:ADP401 4.1 49.3 1.0 OD2 H:ASP154 4.2 48.5 1.0 OD2 H:ASP11 4.2 53.9 1.0 OD1 H:ASP154 4.3 48.5 1.0 OD1 H:ASP11 4.4 53.9 1.0 O3A H:ADP401 4.4 49.3 1.0 O2B H:ADP401 4.4 49.3 1.0 NE2 H:GLN137 4.5 54.3 1.0 O3 H:PO4403 4.6 58.5 1.0 CG H:ASP154 4.7 48.5 1.0 CG H:GLN137 4.7 54.3 1.0 CG H:ASP11 4.7 53.9 1.0 CD H:GLN137 4.8 54.3 1.0 PA H:ADP401 5.0 49.3 1.0 CA H:GLY13 5.0 52.1 1.0

Magnesium binding site 4 out of 5 in the Structure of the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Lifeact-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:57.7 occ:1.00 O4 F:PO4403 2.0 58.8 1.0 O1B F:ADP401 2.0 52.3 1.0 P F:PO4403 3.4 58.8 1.0 PB F:ADP401 3.5 52.3 1.0 O1 F:PO4403 3.9 58.8 1.0 O2 F:PO4403 4.0 58.8 1.0 O3B F:ADP401 4.0 52.3 1.0 O1A F:ADP401 4.1 52.3 1.0 OD2 F:ASP154 4.2 51.2 1.0 OD2 F:ASP11 4.2 59.9 1.0 OD1 F:ASP154 4.3 51.2 1.0 OD1 F:ASP11 4.4 59.9 1.0 O3A F:ADP401 4.4 52.3 1.0 O2B F:ADP401 4.4 52.3 1.0 NE2 F:GLN137 4.5 59.2 1.0 O3 F:PO4403 4.6 58.8 1.0 CG F:ASP154 4.7 51.2 1.0 CG F:GLN137 4.7 59.2 1.0 CG F:ASP11 4.7 59.9 1.0 CD F:GLN137 4.8 59.2 1.0 PA F:ADP401 5.0 52.3 1.0 CA F:GLY13 5.0 55.0 1.0

Magnesium binding site 5 out of 5 in the Structure of the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Lifeact-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg402 b:61.1 occ:1.00 O4 I:PO4403 2.0 59.8 1.0 O1B I:ADP401 2.0 57.7 1.0 P I:PO4403 3.4 59.8 1.0 PB I:ADP401 3.5 57.7 1.0 O1 I:PO4403 3.9 59.8 1.0 O2 I:PO4403 4.0 59.8 1.0 O3B I:ADP401 4.0 57.7 1.0 O1A I:ADP401 4.1 57.7 1.0 OD2 I:ASP154 4.2 54.2 1.0 OD2 I:ASP11 4.2 64.4 1.0 OD1 I:ASP154 4.3 54.2 1.0 OD1 I:ASP11 4.4 64.4 1.0 O3A I:ADP401 4.4 57.7 1.0 O2B I:ADP401 4.4 57.7 1.0 NE2 I:GLN137 4.5 60.2 1.0 O3 I:PO4403 4.6 59.8 1.0 CG I:ASP154 4.7 54.2 1.0 CG I:GLN137 4.7 60.2 1.0 CG I:ASP11 4.7 64.4 1.0 CD I:GLN137 4.8 60.2 1.0 PA I:ADP401 5.0 57.7 1.0 CA I:GLY13 5.0 59.1 1.0

A.Belyy, F.Merino, O.Sitsel, S.Raunser. Structure of the Lifeact-F-Actin Complex. Plos Biol. V. 18 00925 2020.
ISSN: ESSN 1545-7885
PubMed: 33216759
DOI: 10.1371/JOURNAL.PBIO.3000925