Atomistry » Magnesium » PDB 7a1w-7ads » 7ade
Atomistry »
  Magnesium »
    PDB 7a1w-7ads »
      7ade »

Magnesium in PDB 7ade: Transcription Termination Complex Iva

Enzymatic activity of Transcription Termination Complex Iva

All present enzymatic activity of Transcription Termination Complex Iva:
2.7.7.6;

Other elements in 7ade:

The structure of Transcription Termination Complex Iva also contains other interesting chemical elements:

Fluorine (F) 15 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Transcription Termination Complex Iva (pdb code 7ade). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Transcription Termination Complex Iva, PDB code: 7ade:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 1 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg1001

b:0.1
occ:1.00
 O1B a:ADP1000 2.0 0.5 1.0
O a:HOH1101 2.0 1.0 1.0
OG1 a:THR185 2.0 0.5 1.0
O a:HOH1102 2.1 0.7 1.0
O a:HOH1103 2.1 0.4 1.0
F3 a:BEF1002 2.2 0.8 1.0
PB a:ADP1000 3.0 0.5 1.0
O2B a:ADP1000 3.1 0.5 1.0
BE a:BEF1002 3.3 0.8 1.0
F2 a:BEF1002 3.3 0.8 1.0
CB a:THR185 3.4 0.5 1.0
NZ a:LYS184 3.4 0.2 1.0
OE2 a:GLU215 3.6 0.3 1.0
NH2 a:ARG212 3.7 0.3 1.0
O2A a:ADP1000 3.8 0.5 1.0
O3A a:ADP1000 4.0 0.5 1.0
OE2 a:GLU211 4.0 0.6 1.0
N a:THR185 4.1 0.5 1.0
PA a:ADP1000 4.2 0.5 1.0
O3B a:ADP1000 4.2 0.5 1.0
CA a:THR185 4.2 0.5 1.0
O1A a:ADP1000 4.2 0.5 1.0
CG2 a:THR185 4.3 0.5 1.0
CG a:LYS184 4.3 0.2 1.0
F1 a:BEF1002 4.4 0.8 1.0
CE a:LYS184 4.5 0.2 1.0
CD a:GLU215 4.7 0.3 1.0
CZ a:ARG212 4.8 0.3 1.0
CD a:GLU211 4.9 0.6 1.0

Magnesium binding site 2 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 2 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg1001

b:88.4
occ:1.00
 O2B b:ADP1000 2.0 99.3 1.0
O b:HOH1101 2.0 83.9 1.0
O b:HOH1103 2.1 92.4 1.0
OG1 b:THR185 2.1 85.0 1.0
O b:HOH1102 2.1 68.3 1.0
F3 b:BEF1002 2.2 93.5 1.0
PB b:ADP1000 3.0 99.3 1.0
O3B b:ADP1000 3.0 99.3 1.0
NZ b:LYS184 3.3 80.4 1.0
BE b:BEF1002 3.5 93.5 1.0
CB b:THR185 3.5 85.0 1.0
OE2 b:GLU215 3.7 95.6 1.0
NH2 b:ARG212 3.7 96.8 1.0
O2A b:ADP1000 3.8 99.3 1.0
O3A b:ADP1000 4.0 99.3 1.0
F2 b:BEF1002 4.1 93.5 1.0
N b:THR185 4.1 85.0 1.0
PA b:ADP1000 4.1 99.3 1.0
OE2 b:GLU211 4.1 98.0 1.0
O1A b:ADP1000 4.2 99.3 1.0
O1B b:ADP1000 4.2 99.3 1.0
CG b:LYS184 4.2 80.4 1.0
CA b:THR185 4.3 85.0 1.0
CE b:LYS184 4.4 80.4 1.0
CG2 b:THR185 4.4 85.0 1.0
F1 b:BEF1002 4.7 93.5 1.0
CD b:GLU215 4.8 95.6 1.0
CZ b:ARG212 4.8 96.8 1.0
CD b:LYS184 5.0 80.4 1.0

Magnesium binding site 3 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 3 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Mg1001

b:0.9
occ:1.00
 O c:HOH1103 2.1 0.9 1.0
O c:HOH1102 2.1 97.6 1.0
OG1 c:THR185 2.2 1.0 1.0
F3 c:BEF1002 2.2 0.9 1.0
O c:HOH1101 2.2 0.5 1.0
O3B c:ADP1000 2.2 0.9 1.0
O2B c:ADP1000 2.4 0.9 1.0
PB c:ADP1000 2.7 0.9 1.0
BE c:BEF1002 3.3 0.9 1.0
F2 c:BEF1002 3.3 0.9 1.0
NZ c:LYS184 3.4 0.0 1.0
CB c:THR185 3.5 1.0 1.0
O1A c:ADP1000 3.7 0.9 1.0
O3A c:ADP1000 3.8 0.9 1.0
NH2 c:ARG212 3.8 92.6 1.0
OE2 c:GLU215 3.8 0.8 1.0
O2A c:ADP1000 3.9 0.9 1.0
PA c:ADP1000 3.9 0.9 1.0
O1B c:ADP1000 3.9 0.9 1.0
N c:THR185 4.1 1.0 1.0
CG c:LYS184 4.2 0.0 1.0
CA c:THR185 4.3 1.0 1.0
OE2 c:GLU211 4.3 0.6 1.0
CE c:LYS184 4.4 0.0 1.0
F1 c:BEF1002 4.5 0.9 1.0
CG2 c:THR185 4.5 1.0 1.0
CZ c:ARG212 4.9 92.6 1.0
CD c:LYS184 4.9 0.0 1.0
CD c:GLU215 4.9 0.8 1.0
N c:LYS184 5.0 0.0 1.0

Magnesium binding site 4 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 4 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Mg1001

b:0.0
occ:1.00
 O2B d:ADP1000 2.0 0.5 1.0
O d:HOH1101 2.0 1.0 1.0
OG1 d:THR185 2.1 0.3 1.0
O d:HOH1103 2.1 0.0 1.0
O d:HOH1102 2.1 0.8 1.0
F3 d:BEF1002 2.3 0.0 1.0
PB d:ADP1000 3.0 0.5 1.0
O1B d:ADP1000 3.1 0.5 1.0
BE d:BEF1002 3.2 0.0 1.0
NZ d:LYS184 3.3 0.1 1.0
CB d:THR185 3.5 0.3 1.0
OE2 d:GLU215 3.7 0.9 1.0
F2 d:BEF1002 3.7 0.0 1.0
O1A d:ADP1000 3.7 0.5 1.0
NH2 d:ARG212 3.8 0.2 1.0
O3A d:ADP1000 4.0 0.5 1.0
OE2 d:GLU211 4.0 0.0 1.0
N d:THR185 4.1 0.3 1.0
PA d:ADP1000 4.1 0.5 1.0
O2A d:ADP1000 4.2 0.5 1.0
CA d:THR185 4.2 0.3 1.0
CG d:LYS184 4.2 0.1 1.0
O3B d:ADP1000 4.2 0.5 1.0
CG2 d:THR185 4.3 0.3 1.0
CE d:LYS184 4.4 0.1 1.0
F1 d:BEF1002 4.5 0.0 1.0
CD d:GLU215 4.8 0.9 1.0
CZ d:ARG212 4.8 0.2 1.0
CD d:LYS184 4.9 0.1 1.0
CD d:GLU211 4.9 0.0 1.0

Magnesium binding site 5 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 5 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Mg1001

b:0.3
occ:1.00
 O2B e:ADP1000 2.0 0.7 1.0
O e:HOH1101 2.0 0.3 1.0
OG1 e:THR185 2.1 0.8 1.0
O e:HOH1102 2.1 0.5 1.0
O e:HOH1103 2.1 0.3 1.0
F3 e:BEF1002 2.2 0.6 1.0
PB e:ADP1000 3.0 0.7 1.0
O1B e:ADP1000 3.0 0.7 1.0
F2 e:BEF1002 3.3 0.6 1.0
NZ e:LYS184 3.3 0.2 1.0
BE e:BEF1002 3.3 0.6 1.0
CB e:THR185 3.5 0.8 1.0
OE2 e:GLU215 3.7 0.8 1.0
NH2 e:ARG212 3.8 0.3 1.0
O1A e:ADP1000 3.9 0.7 1.0
O3A e:ADP1000 4.0 0.7 1.0
N e:THR185 4.1 0.8 1.0
OE2 e:GLU211 4.1 0.9 1.0
O3B e:ADP1000 4.1 0.7 1.0
O2A e:ADP1000 4.2 0.7 1.0
PA e:ADP1000 4.2 0.7 1.0
CG e:LYS184 4.2 0.2 1.0
CA e:THR185 4.2 0.8 1.0
F1 e:BEF1002 4.4 0.6 1.0
CG2 e:THR185 4.4 0.8 1.0
CE e:LYS184 4.4 0.2 1.0
CD e:GLU215 4.8 0.8 1.0
CZ e:ARG212 4.9 0.3 1.0
CD e:LYS184 4.9 0.2 1.0

Magnesium binding site 6 out of 6 in 7ade

Go back to Magnesium Binding Sites List in 7ade
Magnesium binding site 6 out of 6 in the Transcription Termination Complex Iva


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Transcription Termination Complex Iva within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mg1501

b:61.4
occ:1.00
 OD1 Y:ASP464 2.1 65.9 1.0
OD1 Y:ASP462 2.1 71.4 1.0
OD1 Y:ASP460 2.2 70.1 1.0
CG Y:ASP462 2.9 71.4 1.0
CG Y:ASP460 2.9 70.1 1.0
OD2 Y:ASP462 2.9 71.4 1.0
OD2 Y:ASP460 2.9 70.1 1.0
CG Y:ASP464 3.1 65.9 1.0
OD2 Y:ASP464 3.5 65.9 1.0
CB Y:ASP460 4.3 70.1 1.0
CB Y:ASP462 4.3 71.4 1.0
O Y:ASP460 4.4 70.1 1.0
NH1 Y:ARG425 4.4 69.0 1.0
CB Y:ASP464 4.5 65.9 1.0
N Y:ASP464 4.6 65.9 1.0
N Y:ASP462 4.7 71.4 1.0
N Y:ASP460 4.7 70.1 1.0
CA Y:ASP464 4.7 65.9 1.0
C Y:ASP460 4.7 70.1 1.0
CA Y:ASP460 4.8 70.1 1.0
C Y:ASP462 4.9 71.4 1.0
CA Y:ASP462 4.9 71.4 1.0
N Y:GLY463 4.9 67.8 1.0

Reference:

N.Said, T.Hilal, N.D.Sunday, A.Khatri, J.Buerger, T.Mielke, B.Loll, R.Sen, I.Artsimovitch, M.C.Wahl. Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Wed Oct 2 09:13:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy